Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR19878
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.025s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0046679.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr0 15476410 15479674 +
1 domain prediction
 –
Lj0g3v0046689.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr0 15479667 15485788 +
1 domain prediction
 –
Lj0g3v0046739.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr0 15517753 15520075 +
1 domain prediction
 –
Lj0g3v0124429.1
n.a. n.a. chr0 55908604 55914623 -
1 domain prediction
 –
Lj0g3v0124439.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr0 55914618 55920743 -
1 domain prediction
 –
Lj0g3v0189459.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr0 92648324 92650646 +
1 domain prediction
 –
Lj1g3v3702650.1
n.a. PREDICTED: protein tipD-like [Cicer arietinum] gi|502133650|ref|XP_004501842.1| chr1 42629684 42632986 +
1 domain prediction
 –
Lj3g3v2721420.1
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr3 33406023 33414197 +
1 domain prediction
 –
Lj3g3v2721420.2
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr3 33406978 33414197 +
1 domain prediction
 –
Lj3g3v2721420.3
n.a. Vascular protein [Medicago truncatula] gi|358345857|ref|XP_003636991.1| chr3 33410216 33414197 +
1 domain prediction
 –
Lj4g3v1399990.1
n.a. PREDICTED: protein tipD-like [Glycine max] gi|356513836|ref|XP_003525614.1| chr4 22068248 22071076 -
1 domain prediction
 –
LotjaGi1g1v0230400.1
n.a. WD40 repeat-like protein; TAIR: AT5G50230.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q6NNP0|ATG16_ARATH Autophagy-related protein 16; TrEMBL-Plants: tr|V7CBB8|V7CBB8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0230400 LjG1.1_chr1 53946822 53950510 +
1 domain prediction
 –
LotjaGi2g1v0399300.1
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|A0A0R0LLH2|A0A0R0LLH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89622845 89641364 +
1 domain prediction
 –
LotjaGi2g1v0399300.2
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|A0A1J7G317|A0A1J7G317_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89622984 89626556 +
1 domain prediction
 –
LotjaGi2g1v0399300.3
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89622984 89634941 +
1 domain prediction
 –
LotjaGi2g1v0399300.4
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89622984 89635050 +
1 domain prediction
 –
LotjaGi2g1v0399300.5
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q035U1|RTPR_LACC3 Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase; TrEMBL-Plants: tr|A0A0R0LJY8|A0A0R0LJY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89626446 89634944 +
1 domain prediction
 –
LotjaGi2g1v0399300.6
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha; TrEMBL-Plants: tr|A0A0R0LJY8|A0A0R0LJY8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89635011 89640725 +
1 domain prediction
 –
LotjaGi2g1v0399300.7
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q2VYH4|AROE_MAGSA Shikimate dehydrogenase (NADP(+)); TrEMBL-Plants: tr|A0A151TI49|A0A151TI49_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0399300 LjG1.1_chr2 89635282 89636167 +
1 domain prediction
 –
LotjaGi4g1v0107000.1
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15002830 15008515 -
1 domain prediction
 –
LotjaGi4g1v0107000.2
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15002830 15015910 -
1 domain prediction
 –
LotjaGi4g1v0107000.3
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15002830 15018567 -
1 domain prediction
 –
LotjaGi4g1v0107000.4
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|I1K1T0|I1K1T0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15002830 15018567 -
1 domain prediction
 –
LotjaGi4g1v0107000.5
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q4AEG6|BMP10_RAT Bone morphogenetic protein 10; TrEMBL-Plants: tr|G7LGE3|G7LGE3_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15006181 15008515 -
1 domain prediction
 –
LotjaGi4g1v0107000.6
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q41058|GLGB1_PEA 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr|G7LGE3|G7LGE3_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15008616 15010871 -
1 domain prediction
 –
LotjaGi4g1v0107000.7
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|G7LGE3|G7LGE3_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15008616 15018567 -
1 domain prediction
 –
LotjaGi4g1v0107000.8
n.a. Transducin/WD40 repeat-like superfamily protein; TAIR: AT3G50590.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|P39706|SWD1_YEAST COMPASS component SWD1; TrEMBL-Plants: tr|A0A0S3R514|A0A0S3R514_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107000 LjG1.1_chr4 15014049 15018567 -
1 domain prediction
 –
LotjaGi4g1v0226200.1
n.a. WD40 repeat-like protein; TAIR: AT5G50230.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q6NNP0|ATG16_ARATH Autophagy-related protein 16; TrEMBL-Plants: tr|A0A1J7HIL9|A0A1J7HIL9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0226200 LjG1.1_chr4 53556292 53559460 -
1 domain prediction
 –
LotjaGi4g1v0226200.2
n.a. WD40 repeat-like protein; TAIR: AT5G50230.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q6NNP0|ATG16_ARATH Autophagy-related protein 16; TrEMBL-Plants: tr|A0A1J7HIL9|A0A1J7HIL9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0226200 LjG1.1_chr4 53556755 53559215 -
1 domain prediction
 –