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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0127200 |
| Transcript ID | LotjaGi4g1v0127200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | polyamine-modulated factor 1-binding protein; TAIR: AT2G17990.1 polyamine-modulated factor 1-binding protein; Swiss-Prot: sp|P07942|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr|I3TAA6|I3TAA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0127200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18556058..18562542) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCACCTTGTGCTTATGTCAGATATTGGTTCTCTTGTTGTGTCTTCCTTTTTCTTTAACTTGACAATAAAGGGAAAGG GAAAGGAGGACGCGTGCTGCAACACCACGATCCAACTCACACCCATCGTCGTCTTCTTCTTCTTCTTCCTTGCCTTACCC CTCGTCTCGCTTTTCATCCAACCAGGTTCTATATTCTCTTTTCATAGATTCTTCTTTCTTTTGCTTTTGTGGATATTCAC TAGTATTCAGTTCTGGGTCTGGGTTCAATTTCGATTCCCCCAGTTGATACTTTTCCTGACTATGAAATTATCTAGAGCTG TTTTAGTTTCTGGGTATCCATTTCATGCATTGAACTGGTAAATGCAGTAGCTTGAAGTATGAGCTTTCTTTCTGATTCTT AGCATCTAAATGATTTGATGTTGATAATGTTGTCAACTCTATAGTTTCTGTGTAATTCTTGGGTGTATTTATTTTAAGCT CTCGAGTTCGAAATGGGTGAAATATGTATATAAGATTGAAGTGTAGAACTCTTTATTTTTAGTATATGGCATTCAGATTA TAGGCTACATCCTCTTCTAGTTTTAGTTCTGGATTTGGTGATAACAATTTAAGCCCACTTTTATCTTTTGGTGTTCGCCT GTTCGGTAGACAATAATAGACATATAACAGAACAAAGCAAAACGTGAGTACAGGACACAAAGTAGGAAAAGTGGTAGATT TTGGTTCCAGTCCTTTTGAATGGAATAATAGAGAACAAAACAAAACAGACTGATCCGTTCCTGTCTGTGTGCCAAACTCT ACCTATGTCTTTTTTCTTGCTCTTCAACTGAGATTTACCATGCATTTCTAGTTGCAATGGGATTGTTAAGGTTTTTTGCA TTTTGAAAACTTAAGGTCTGATTGATTTTAACTTTTTATTATAAAAATTTCATCTTGTTTTCACTTTGTTTCGTATTACC AAATATTTGTATCTAATGTGACGTTTTTATAATTAAAAATGAAAACCAGAAATTAAAATGAAAATAGGAAAGGCCCTAAG CCTTATATCTTTATTTTGATGCATATATTTGGTGATTACATTATTTTAAGTTGAACGTGTTATTATTTTCTCATATTTTT ACCCAACATTTGACAGGAAATGGCGACAGATGAGGATATTGGCATGTCAGCTATGAAGTCTAAGTTGAGTCAATCACATG AAACATGGAAGCAGGGGATGGAAAGAAACCAATCTCAAGTTGATGCATTGCAAGCAAAACTTATGGAGGTGAAGGCTTGT ATACAGGGCTCAAAGGAAGATACAAAAAAGGAATTAGAGGTTCTATGGCGAAGAGTCAAGACTACAGCTACCTTGTTGAC CTACTTAAAATCCAAAGCTAGAATTATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATCAAAAAATTAGACGGGA TAGGGCTTGTTGACAAAGATGGTATTCCTTTATCAGGTTGGTCTAAGAATGTTGATCTTACTTCATTTGATGGACCAGAC GATGAATCTTGGATAGGGATCAGCTGTCAGCGTGGCTTCTTAGACGAACAAGATGCAGTTTATATAGGTGAGATACTTAA ATCTGTCCAGATGGTATCGGATGTGATGGAAGCCCTTGTCAAAAGGGTTTTATTAGCAGAATCAGAAACTACGATTGAGA AGGAGAAAGCAAGCTTAGGTCAGGAAGAAATTATGCGAAAGTCTGCTCAGTTGGAGAATATGTCTATGAAATTAGAGGAG ATGGAACGATTTGCTTTGGGTACAAATAGTATTTTGAATGACATGAGGCAAAGAGTTGCAGACTTGGTGGAAGAAACAAC TAGACAGAGACAACGGGCTGCTGAAAATGAAGAAGAGCTTTGTCGAGTGAAACAGGAATTTGAGTCTCTGAAGTCATATG TTAGTAGTCTAATCACAGTGAGAGAAACCTTACTTTCGTCTGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAACGG TAACTATATTTCATTTAACATACTATATGCAATATGCTTCTGTTAATTAAACCTGGATTTTGACCTGCATCAAATTGTTT GACTTAGATGCAGTATGCTTCCATGATGGCAATATGCTGATGTTTAATTTTCCCAAATTTATGTTTCTTGATGGCATGCC CTTGTTTGATTATTCTTAGATGAGTATTTTACAGTTTACCTTTGTCAAATAATTTTATCTTTTTTTGTTTTTTTTTTCTT TGGGTACACAGGGCGAGTTGCTTCTGCTCATGCATACAATGTTTATATTCAAATCTTATATTGAGAAAAAATCTTCATCT TATGCTGAAATGAAGTTGTGGACCTTAGTGGCAATTTGATAAAAGAAAACACTAGAATAAATGGTGTTATTGACATATAT ATCATGTATGATAGAAATCTTTAGGGTCATTTATTTGCGAAATTAGTTCTCAGTTTTTGTTTTATTATTCTTATTTGGTT AACCATAATACTTCGAGTTGAATAAAATTTCTTCCTTTCATGAGTTATAACTTGCCCCTCCCCCCTCTTTATTGAAGAGG ATGTCTTCCCTTAATTATTAGCTTTTAATTGAGAAGTTAGCTTTTGGAATTATGGGAAAATCATTCTGTTGAAGAGAGAA CTAGCCTCTCATTCTCAAGAATCTGAAACAGAAAAACTGACTAAGAAGATGTTGGATGCTGGAATGATTCAATCAAGTAT TAGTCTTTATGCTAGCCCAGAACCCTAAAAACGATTTAGGGGTCGAAGACTCAAAGCTTCCTCATTGCGCCTCCTTCTCT TTCTCTGTCGACTTGAGCCCCCCTTCTCCCCGCCAAAGCTCCCTCCTGTGCTTCCGTTTGAGCTCCCCTCCGACGATGTC ACCTTCATCTATCACAAGTGGTTCCCATTTCATTAGCATAACAAGAATTTCAAGAGCAGACTGCAGACCAACTTCAGGAA TGTCATAACTGGCTCCCATTTTAATAGTGGAATCAGAATTGTGAGAAATATTAGTGGAAGTGTGGTGGATATTTAAGAAT TTTTCTTACCCCACCTTGAAGACAAGGTGGATCTTATTGGGGAAGGTATTGATAGAATTAGACTTGATCACCTATTACTA AGGCGTATCATAGGAAGAATAGAGATTAGTGGGCTTAAATTGGGTTGTTAGTAGAAGTTCATTAGGCTTAGTCTAAAAGA CCATTGTGTTAGTCAGTTAATTGCTTTTATAGTTTAGTTAGATAGAATTAATAACAGAAGTTTGTTAGTTAGTTTCCTAT AAGAGGAATATAAGGGTAGTTAGGAGATCATTCGGGATATTGAGTTATTGTGGAGAGTTCTAGCCTCTCGAATGCTAGAG AATTGTATACATTTTCTTTCTTTTCAATAAGGATTTCTTTCCTTCTATCCCATCTCTGCTCCAGCTCTATCAAAATACTT CACCCTAACCTCCTGATAGGATGGTGGGTTGTATCCTACTCCTACATCTTGTCTAGTGATTAACTGATTATTTCACCCAT TCTATGGAACTCTTCACTCTTGACCACATTAAAAGATATTGCATTGTTGTATAAAAACGAAGCAAACTCTAGATTTGAAT CCTCCCTCAGGCTTTTCTTGAAAGTGCTATTGATTGTAACTTGAGCAATTACATCCCTTTTCTTGAAAAGAGCCACTTAA CTCTCCAGTTTTTCTTGCATTTTCCTTTATCAATCCTTATCTAGAAATTCACCACCACAAATGTGATAGGAACCTTGTCA TTAGTAAGAGCAAGGATTACTCTAAGGTTTACAAGCGTAGGGGTAAAGTGGGGATAAACAATAGTCTCACTACCTTAGGA GAGTAAGGTAACTAATTGTGAGCTGGCAGATTCCCTTTGCAGAGAATCAGGCCAGGTGGTGTGTATAAACACCAAAGGAA GAGAGAGAGAAAGTAGGCTAGAATTGGATTAGTCTTGGACTAGGAGAGAATTGAAGCACTCTCGAATTTGCTTCTGCTAT CACTGTTATTTCCTTTCTTTCTGTACTGTTTCTAAACTGATTCTTGGTGATTTCACCAGAATCCTAGTAAATAATACAAG TTCCTTCTGTTAATTCTTTATCTTTCTCTGAATACCTATCAAAATGCTACTAGCTCTATTAGCCTTTTATAGTTGTTTAT CTTGCAGTCCAATCTCTTATCCTGCATAATAGTCCTCCTCTTTCTCGTAGTATTTACATCTGATTTTTATGGCATCTCAT CAACTGAGACTCCATATTCCAGGCCATATAGTCCTTGCTATAGGAGAATTTTGAGTTCTTGATCTGCCTCGACTCGCAGA GACAAGAGGATTTCCTCTTGAACAGCCCTCAATTTCTTTCCTAGTACCACTGTCACCACCTGACGCCATTGCAAAAGAAA GTCATTTAGTCAAAAAAACAGAAAAAATTGTTTTTAGAGAATCGAAGCTTCTCTTCTCTGCTGCAAAGTTGTGAAAGAAT GGAAGCTTGGTGGTTACCTAGTTGTGAAATCGTTCCCTTCTACAATGAAAATCACGGTTCTGTGAACATTGCTCTAAATG CCTTTTTGATGGATGCTTCTCTCATTGTTCAGGCTACCTTTTAGTCTGTTACCTTTACAGTATTTTTGGTTTGGATGAAG TATTTTTAGAGGGAGTGATGTAGATTTTTAGGGAATTTGAAATGCTCTATTTTAAAAGTGTTTGGATATTTATTAAAGAT TTTAAATTTCAAGGTAATTAATTGATCTGGGCAATTTCATTATCTGAAAGTGAGGAAACCAAAATGACACCACAATAGGC CGAAGCAATACTACCAGTGGCTTGGCCGGGTCTGGAACAGCAGCTTATCCCTCTGACACCAGAAAATCGAGCTTTATGGC AGCCATGGTGAATGCTCTGCCACGACGCATAGGATGGAAACTTTCAGATCTAAAACTCTGCCTCCTCAAAATGATGACGA AGCTGGTCATCGTTATGGAGGAGATTGGTCAGCTGAATCAATAGCCGTGATGGGGTTGGGGATCTGTTGGCGGTGTTAAC ATTGGTGTTGTAATGAGGGAAAGGTGAAGTACAATGATGGGCACAACAGAACGTGCCGAGGAACACCACCAGCGAAACGA CACCGTACACACCCTGGGGGCTCCAGAGCACCATGAGACCTAGTGCCACAACCTGTTTCATCAGGCCCACAATCACCACA ATGGCTAGACAAACAAGAAATCTACTATTGTAGGAATTCAAACATTAACCCAAACAAGAGATTTTAGCAATTTAGGGAAT TCAATTGAAATTCCTTTTATTTTAAATTCTCTGAAATTTGAAACTTCTGTATCCAAACACATTAATGATGCTCTTCAAAT GTGAATATAACTTGTGTGGGGGTGTGATGGTGAGTGTATTGCGAGCCAGTTCATACATGCTTGTATAGCGTACCATGTAA GTATTAGTATCCACACGTTTTCATACATGCTTGTATACATGCTTGTATAGCGTACCATGTAAGTATTAGTATCCACACGT TTTCCTGCTAATGGTGTTTATTTTAGTTTTAGTGCTTTCATAGAATGTTCAGGTCTATCTGGATTGAAGATCTGTTTGTC TTACTGCTTGATTTTTTCTCTGGAGCAGGTTAGTTGGAAAGACTACCCAGCTGGAGGGTGAGAAAATGCAGAAAGAGGCT GAAGTTCAGAAACTCATGGAAGAGAATGTGAGGTTGAGTGCTCTGCTGGACAAGAAAGAGGCTCAAATTCTGGCATTGAA TGAACAATGTAAGATGATGGCCTTGAGCTCTTCACACATGTAAATGACATTGTAATGTACTCTACAGATCGCTTGCTTGT TCTCTCTTCCTAGGTCCTCTAACCCAGAAGAAGCATCAATGGAGGGCTCCATAAACATCATGAATGCCTTTGTTTTATTT TCTGACGCCATTTCTATGCCTTTTTTTCTAAATTGAACTCAGAAAATAATGTTCCTTAGAATGTAAACATGGTGTGCTCT CAGTCATGAGAAAAACAAAATATAAGTTGTCTCTTCGGTAGGCCGAACCATCAACCTTACACGGTGTATACCAATCAAAT GTTAGAGGCCAGCAAAAGATATCTGCTATATACTGAGAAATCCTTAGGTGCTCTCATAACAAAAGAAGTATTTTGCTAGG TATCATTGTCTCACTTCAGTCATAGCATTAAAATGTAGTTAAAGAAGTATTAACGGCTCACAGATTTTTTATGATATAAA TTCAATGGTCATAAGATAAGAGATTTTTCTTCTGGGAGCATCTAAGATTTTATCAACCTATTGGATTTGTTAAATCTTAA CTCTTGAATTTTTTTTCTTCTCGTTATTGTTATTGCAATAATTGATGTGTGACATATTCCAGGGTAACAAGGTAAATTTC ATGTCGTAGGAGCACCTGAAATTTCTCTTACTAGCTTGAGAGGAATGTTCGGTTGTCGTCTTTTACTTTGAACAATATAG TAAAC
CDS sequence (LotjaGi4g1v0127200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACAGATGAGGATATTGGCATGTCAGCTATGAAGTCTAAGTTGAGTCAATCACATGAAACATGGAAGCAGGGGAT GGAAAGAAACCAATCTCAAGTTGATGCATTGCAAGCAAAACTTATGGAGGTGAAGGCTTGTATACAGGGCTCAAAGGAAG ATACAAAAAAGGAATTAGAGGTTCTATGGCGAAGAGTCAAGACTACAGCTACCTTGTTGACCTACTTAAAATCCAAAGCT AGAATTATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATCAAAAAATTAGACGGGATAGGGCTTGTTGACAAAGA TGGTATTCCTTTATCAGGTTGGTCTAAGAATGTTGATCTTACTTCATTTGATGGACCAGACGATGAATCTTGGATAGGGA TCAGCTGTCAGCGTGGCTTCTTAGACGAACAAGATGCAGTTTATATAGGTGAGATACTTAAATCTGTCCAGATGGTATCG GATGTGATGGAAGCCCTTGTCAAAAGGGTTTTATTAGCAGAATCAGAAACTACGATTGAGAAGGAGAAAGCAAGCTTAGG TCAGGAAGAAATTATGCGAAAGTCTGCTCAGTTGGAGAATATGTCTATGAAATTAGAGGAGATGGAACGATTTGCTTTGG GTACAAATAGTATTTTGAATGACATGAGGCAAAGAGTTGCAGACTTGGTGGAAGAAACAACTAGACAGAGACAACGGGCT GCTGAAAATGAAGAAGAGCTTTGTCGAGTGAAACAGGAATTTGAGTCTCTGAAGTCATATGTTAGTAGTCTAATCACAGT GAGAGAAACCTTACTTTCGTCTGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAACGGTTAGTTGGAAAGACTACCC AGCTGGAGGGTGAGAAAATGCAGAAAGAGGCTGAAGTTCAGAAACTCATGGAAGAGAATGTGAGGTTGAGTGCTCTGCTG GACAAGAAAGAGGCTCAAATTCTGGCATTGAATGAACAATGTAAGATGATGGCCTTGAGCTCTTCACACATGTAA
Protein sequence (LotjaGi4g1v0127200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATDEDIGMSAMKSKLSQSHETWKQGMERNQSQVDALQAKLMEVKACIQGSKEDTKKELEVLWRRVKTTATLLTYLKSKA RIMAVPHLAHTSCGIKKLDGIGLVDKDGIPLSGWSKNVDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVS DVMEALVKRVLLAESETTIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTRQRQRA AENEEELCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKMQKEAEVQKLMEENVRLSALL DKKEAQILALNEQCKMMALSSSHM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 343 | 338 | 1.4E-167 | – | |
| PANTHER | 6 | 343 | 338 | 1.4E-167 | ||
| Coils | 219 | 239 | 21 | - | – | |
| Coils | 292 | 333 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to red or far red light | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. | ||
| Biological process | Negative gravitropism | The orientation of plant parts away from gravity. |
Expression pattern of LotjaGi4g1v0127200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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