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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0144800 |
| Transcript ID | LotjaGi4g1v0144800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 7A; TAIR: AT2G43040.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q8GZN1|NPG1_ARATH Protein NPG1; TrEMBL-Plants: tr|A0A1J7GH42|A0A1J7GH42_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0144800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23241981..23245726) extracted from Lotus japonicus Gifu genome v1.2.
AACGAGCGCGTGAGGACGATACGGGAGGTGTGCGCGAATGGGAGCTCCATGGCGACAGCTGAAGTTGAAGCTAAACTCGA TGAAGGGAACATTCAAGAAGCTGAATCAGCATTGCGAGATGGCTTGTCTCTCAATTTTGAGGTCAGTTTTTGTGTATTGT ATGTTTCATAATTGTGATCGAATCTATATCATGATGTTATGGCCCCATGAATTTAAAACCTTGATCGTAACAAATTTTGT CTGAATTACATTATTGGCATGTTTGGATATGCTTTTATGATTGATTCTATTACTAAAATCAATTTTGGGGGAAACTTCGG TGAGTGAGTTTTGTGTGTTAGAATTGATTAGGAGGAAAATCAAGCGAATCAAAACATGCTATATGTTGTGTTAAAATTCC CATTGTTAATAGGTAGAGCTTTGGAGGTACGTGATAGACTGGTTTTATACCTTCATTGTAGAATATGACTGGATTTAATT ACAATTTTCAGTCCAATATTAAGGTCTTTGACTCTTTGGGGAGGGGGGGTTTTCATTTTCCTTAACTTTTGTTTGAGGCA TAGAATAGTCTTGGTCCCAACTCTCAATCTATGTTGTTAATCCCGGCTAGATCCGGCACGATCCCGGTGCGAAAAGGAAG TTTCTGACATTTCCAAAAATGTACTCCAATTTTAAACGCTGGGCCTGGGGGTGTTTTTTAGGGGTATTTCCGGGCTTTCG TGACGAATAAAACCCTAGATGAGAGGAAGAGTTCGACCCTCTCCTCACTTGCCCTGCTCTCTGCGCCGTTGCTCTCTCAA GCGTGACAAATGGCTGCTACTATGGAGGAGGTATGAATATGTTATGGATTTCAAGTAATATTTATCATAGATTTAGTGTA TATGGCATAATTATGCAAAATATAGACAAAAATTCACTATTCCGGCTATCGCGCTATCCCATTTTTTGGGCCCGCCACTA CGCGCTGAGATCTAGGATTGACAACATAGCTCCCAGCCTTTTATTGCAATATGTTAATACTTGCCAATCATCATTTGTGG AAAAGTTCTCCCTTGGGGCCAGGCTTCCACTCTCAGATTTATGATTACCCTTTTTACAAAAGAAAAGTTTGTGTATTGCT AGGAATTTGTTGTTTTATGGTACAACGTTTGCATAGTGTGTGAAGAATAAGATATGAGCACAACAGTAATGAAGTTCCAC GAAGCAAAATTTGCAGTATCTTATCTATTTAATTTGAACTTTTTTTTTTCATTTTTAACAAATGTGCAACAGCCGGGGGG GGGGGGGGGAGTTCATTTCTTGTAAACATGAGTCAAATCTCTATTTTACCAGTATTGAGAATATACTTTGATATGAAGTT ATGAACAGGAACTTCATCACATGTAATTGGATTTGAAACCAGAGAAACTGGTACAATCTGTAAATTTAAATACAAATAAC TCATTGAGTGTAATATGAAGATCTGTCATACCTTTGTTTTATCTTGGAATTGAATTGCATAATACCATTTTTGGTGAAAA ATCAAATTGTATGTTTGAGTTATGTTCCATGGTCATTGTTAAACTGTAACAGGAAGCAAGAGCTCTTCTCGGAAAATTAG AGTATCAGAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTTCAAGCAGCAATACAGCGACTGCAA CCTTCCCTTTCTGAAAAGCCAACCATCAAGAGAGGTCCCACCCGTACTGAGTCACCTTCCTCGGTCTCACAGCATGGTGC TAGTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAGAAGCTTGGGAAGTTTACTGGTATTGAATATTGTA TTAGCTTCTGAAAGTTATTCTCAACATGTTATTAACTTTTTGTCTTTATTGTCTTTTAGAATGGGAATGAATCTTCAATT CCCGCTGCACATATATCATTATATCTTTGAATCAGTTTGAATACATTGAAATGCTTATTTCATGGATTTATGCAGAAGCT GCTAACGAGTGCAAGCATGTTGTTGATGCTGTTGAGAAGATATTTTATCAGGGTATATCTGATACTCAAGTGGACAGTAA ATTGCAGGAGATAGTCAGCCGTGCGGTAGAGCTCCTTCCCGAGCTTTGGAAACAGGCTGGTTGCCATCCTGAGGCAATTG CTGCTTACCGGCATGCCCTTCTTAGTCAATGGAACCTTGACAATGAATGTTTCGCGAGAATTCAGAAAGAATTTGCTGTA TTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGACTGACGGGTCTTACGTACCTAAAAATAA CCTGGAAGAGGCAATGCTTCTTCTTATGATTCTCTTAAGAAAGTTTAGCCTAGGTAAGATAACTTGGGATCCTTCAATTA TGGACCACCTAACATTTGCACTTTCAGTATGTGACCAAACTACTACATTAGCTAAGCAACTTGAAGAGTTGATGCCTGGT GTATATCACCGTATCGACCGTTGGAATTCTTTAGCTCTTTGTCATAGTGGAGCTGGACAAAACAAAAGTGCATTGGATTT GCTAAGGAAATCATTGCACAAGCATGAACGACCAGATGACCTGACATCGTTATTATCAGCTGCCAGGATTTGCAGTGAGG ATCCCCATCTTGCTGCCGAGGGAGCAGGATATGCGCAGAGGGCAATCGATAATGCCGAAGGCTTAGATGAGCATTTGAAA GGTGTCACTCTTCGGATGCAGGGACTTTGCCTTGGCAAGCAAGCTAAGGTTGCTTCATCTGACTTTGAGAGGTCTATGCT TCAGTCAAAATCTCTGCAATCATTGGAGGATGCAGTTAGACTAGAGCCAAACAACTCTGATCTAATTTTTGAATTGGCTA TTCAATATGCCGAGCACCGAAATCTGACTGCTGCTTTACGCTATGCCAAGCAGTACTTTGACAAAACTGGTGGCTCCAAG TTGGAGGGATGGAGATTACTTGCACTGGTTTTGTCTGCCCAAAAAAGATTTTTGGAGGCTGAAGTGGTGACTGATGCTGC TTTAGATGAGACTTCAAAATGGGAGCAAGGGCCACTGTTCAGGCTGAAAGCCAAGCTGAAGACCTCCCAGTTACGACCAA TGGATGCTATTGATCTTTATCGTCACCTTCTTGCATTGGTCCAGGCCCAGAAGAAATCATTTGGGCATCTTAGACCTAGT TCACAGGTAAAATTCTGCCATTTTCTCTTCTTGCAGTAATTCTTATGTTTAAATTTAATAATAATGAGATATGTGTTATC AACTTATTCTTGTGTTTTGTCATTGTTATTGAAATGGAAAGGCTTGCATCCTCTTTCTGGTGGTTTTACAGAAAGAAACT TTTTACTTAATGGGGATGAAGGAAAAAAGATAACAGCGGCATTTCCTCAAGAGATGCTCATTGCATCATGGACTCCATTT ATAAATTGTTGATTACAAAACTAATCTTACTCTTATTTTATTAACTTTTTGCAGGTTGAGAATGATAAAATACATGAATT TGATGTATGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAAGATGCTGAAATCTGTTTGCAAAAGGCCA GAGAGTTAAAGGAATACTCAGCAGAAACAGTACACACTGAAGGTAATCCCGGATCCTTTATGCTGTTAAAAGTTTTCTAC TTTAGCATGTAGCTTGTTTATTTTTATTTTTTGGGTTGTGCGAGCTCCGGCTACCTCTGGGGAGAG
CDS sequence (LotjaGi4g1v0144800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACAGCTGAAGTTGAAGCTAAACTCGATGAAGGGAACATTCAAGAAGCTGAATCAGCATTGCGAGATGGCTTGTC TCTCAATTTTGAGGAAGCAAGAGCTCTTCTCGGAAAATTAGAGTATCAGAGAGGTAATGTCGAAGGTGCTCTTCGTGTGT TTGATGGGATTGATCTTCAAGCAGCAATACAGCGACTGCAACCTTCCCTTTCTGAAAAGCCAACCATCAAGAGAGGTCCC ACCCGTACTGAGTCACCTTCCTCGGTCTCACAGCATGGTGCTAGTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTC TCTACAGAAGCTTGGGAAGTTTACTGAAGCTGCTAACGAGTGCAAGCATGTTGTTGATGCTGTTGAGAAGATATTTTATC AGGGTATATCTGATACTCAAGTGGACAGTAAATTGCAGGAGATAGTCAGCCGTGCGGTAGAGCTCCTTCCCGAGCTTTGG AAACAGGCTGGTTGCCATCCTGAGGCAATTGCTGCTTACCGGCATGCCCTTCTTAGTCAATGGAACCTTGACAATGAATG TTTCGCGAGAATTCAGAAAGAATTTGCTGTATTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTC AGACTGACGGGTCTTACGTACCTAAAAATAACCTGGAAGAGGCAATGCTTCTTCTTATGATTCTCTTAAGAAAGTTTAGC CTAGGTAAGATAACTTGGGATCCTTCAATTATGGACCACCTAACATTTGCACTTTCAGTATGTGACCAAACTACTACATT AGCTAAGCAACTTGAAGAGTTGATGCCTGGTGTATATCACCGTATCGACCGTTGGAATTCTTTAGCTCTTTGTCATAGTG GAGCTGGACAAAACAAAAGTGCATTGGATTTGCTAAGGAAATCATTGCACAAGCATGAACGACCAGATGACCTGACATCG TTATTATCAGCTGCCAGGATTTGCAGTGAGGATCCCCATCTTGCTGCCGAGGGAGCAGGATATGCGCAGAGGGCAATCGA TAATGCCGAAGGCTTAGATGAGCATTTGAAAGGTGTCACTCTTCGGATGCAGGGACTTTGCCTTGGCAAGCAAGCTAAGG TTGCTTCATCTGACTTTGAGAGGTCTATGCTTCAGTCAAAATCTCTGCAATCATTGGAGGATGCAGTTAGACTAGAGCCA AACAACTCTGATCTAATTTTTGAATTGGCTATTCAATATGCCGAGCACCGAAATCTGACTGCTGCTTTACGCTATGCCAA GCAGTACTTTGACAAAACTGGTGGCTCCAAGTTGGAGGGATGGAGATTACTTGCACTGGTTTTGTCTGCCCAAAAAAGAT TTTTGGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTTCAAAATGGGAGCAAGGGCCACTGTTCAGGCTGAAA GCCAAGCTGAAGACCTCCCAGTTACGACCAATGGATGCTATTGATCTTTATCGTCACCTTCTTGCATTGGTCCAGGCCCA GAAGAAATCATTTGGGCATCTTAGACCTAGTTCACAGGTTGAGAATGATAAAATACATGAATTTGATGTATGGCATGGTC TGGCAAATTTATATGCAAGCCTTTCTCATTGGAAAGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAGTTAAAGGAATAC TCAGCAGAAACAGTACACACTGAAGGTAATCCCGGATCCTTTATGCTGTTAAAAGTTTTCTACTTTAGCATGTAG
Protein sequence (LotjaGi4g1v0144800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAEVEAKLDEGNIQEAESALRDGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKPTIKRGP TRTESPSSVSQHGASLVLEAIYLKAKSLQKLGKFTEAANECKHVVDAVEKIFYQGISDTQVDSKLQEIVSRAVELLPELW KQAGCHPEAIAAYRHALLSQWNLDNECFARIQKEFAVFLLYSGVEASPPSLAVQTDGSYVPKNNLEEAMLLLMILLRKFS LGKITWDPSIMDHLTFALSVCDQTTTLAKQLEELMPGVYHRIDRWNSLALCHSGAGQNKSALDLLRKSLHKHERPDDLTS LLSAARICSEDPHLAAEGAGYAQRAIDNAEGLDEHLKGVTLRMQGLCLGKQAKVASSDFERSMLQSKSLQSLEDAVRLEP NNSDLIFELAIQYAEHRNLTAALRYAKQYFDKTGGSKLEGWRLLALVLSAQKRFLEAEVVTDAALDETSKWEQGPLFRLK AKLKTSQLRPMDAIDLYRHLLALVQAQKKSFGHLRPSSQVENDKIHEFDVWHGLANLYASLSHWKDAEICLQKARELKEY SAETVHTEGNPGSFMLLKVFYFSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 569 | 569 | 0.0 | ||
| PANTHER | 1 | 569 | 569 | 0.0 | – | |
| MobiDBLite | 70 | 89 | 20 | - | – | |
| SMART | 98 | 131 | 34 | 63.0 | ||
| Gene3D | 257 | 434 | 178 | 4.2E-9 | ||
| SMART | 282 | 315 | 34 | 16.0 | ||
| SUPERFAMILY | 284 | 558 | 275 | 1.4E-9 | ||
| Gene3D | 436 | 570 | 135 | 9.7E-7 | ||
| SMART | 438 | 471 | 34 | 250.0 | ||
| SMART | 528 | 561 | 34 | 0.28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0144800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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