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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0153300 |
| Transcript ID | LotjaGi4g1v0153300.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LAG1 longevity assurance-like protein; TAIR: AT1G13580.2 LAG1 longevity assurance-like protein; Swiss-Prot: sp|Q8W4Y5|ASCL_SOLLC ASC1-like protein; TrEMBL-Plants: tr|I3T6V0|I3T6V0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0153300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:25492829..25497177) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTGGATTCATCGACTCAACACCATTGACTGGCACCATGAATCTTACCCTGACTACCAGGATTTCTACCTTCTCCC CTGCTTCGCGCTCTTCTTCCCCTCGCTTCGATTCTTCCTCGATAGGTTCCTTTTTGAGGTACCTTCTTCGATTTTCTCAA CTCTTCTGACTTTTTCTCCTGATTGTTATGAACCTGTAATTGGATGTAAAACCTTGATTGACTTTTTCAGAATGTTGAGA TTGCTTTAGCTTGAAAAGTATAAACTTCAAATTTGATGTGCTTTAATGTTGCTTTGACTTTATATTTATACATGATAGTT CTGGTTCTTTTTTCCCCACCTGTTACTGGCTCTGCTTGTGAATTTGTTGAGAAAAGTTGTATACCAATTTGTAGATGAAG CTATTGAGAAAGTTTTGCTTTGGACAACTAATTATGATTATGATTTTTTTTATAGGATACCTTTATGGTTTAACTAATGT CCATACTCCTTAAGCATACTGATTAAGGAAAACATTTATTAAAAGGTTACCACTATATTAATAGATACTTTCTATTTCTT GATTTCTTAGTCACTTGCTAATGACACTAGGTATCCTTGATGTATAGGTAAGCTTGTAATTTTTTTTTTAATTCACTGTG TTTAATATTTCTGGGTATTGGGTAAATAATTCTCTTGGTGTTCCTCTCCTACAGCATTGCCTGACCTGCTTGTTGTCATG GATTTTTTTCAAAGTTATGTGTAGTTTGGACTTTTAAAAAACAAGGCATTATCTGGATGCTCCATTCCTTTTTTCAATGG GTAGCTGCCAAAATTACATTAAGTCTCGCTTTAGTTCTTAACTTCAGCCCTTTTTCTCTCTATATTTTCCTTTAGACTCT TCATTACTTACTATGTTACTGCCAGAAATTAAAAAAATGCATCTCATTTTCAATTTTTGAAGTCTTAGTTTGCAATCAAG TTTGCAATCAAGCTTTTGTGATGACAAAGTTCACCCTTTGCAGGGCTATGGTTGTTCTCTACTTTTTAAAATTCTTTTAG AATTTTTTTCTGGTTATATTTAGTCAATCTTAAGTGAATGGAATTTACAGAGAATGGCTAGAAGATTGATTTTTGGAAAG GGGAATGAGAAGCTGGACTACCAGACAGATGAGAGAAGTAAGAAGATTAGGAAATTTAAAGAATCAGCCTGGAAATGTAT TTATTATCTATCAGCTGAGATTCTTGCTCTGTCTGTAACCTATGATGAACCGTGGTTTACTGATACGAAAAATTTCTGGG TGGGGCCAGGGAGTCAGGTCTGGCCAGATCAAAAGATTAAGTAAGATTTCTTCTTAACATACCCAATTATTGTGGCAATT CAGTTGCAATTTTTAATCTATCTTCTGTAATAATTTTTCCTTTGGGAAACTTAAGTTTCCTTATAGAGTTGTGACTTACT AACATTTCAGGTTGAAATTGAAGACAGTCTATATGTATGCTGCTGGATTTTATTCATACTCCATTTTTGCTTTAATATTT TGGGAAACAAGACGCTCAGACTTTGGGGTTTCCATGAGTCATCATGTCGCTACTGTCATTCTCATTGTGTTGTCATACAT TTTTAGGTATGTTTTTATTGACTTCAATTTGTCTTGTCATCCAAGATTTTTATGAAATTCTGAAGTCACTTTGTTCCAAG CTCCTTGTCAAAATGGTTAAAGGGGGCAATCTTGTCTTTTATTTAATTTTATCTATGTGCTTTTTCCCAAGTTAAGCCAT GTAATGAATTTTACTGACTTGGTCTTAATGGAAAATAGAATGTAAAATACTATTTTAAAATTTTAAGCAACATTTTTAAA TTATGAAGGATAACAGAATATCACCAGACTTGCCAAAACTAGAAAGAAAAGCAAAATATTTGAAATGTGTGAGATGTATT AAGGATGATGAGGGAAAAGTATTGGTCATTGAACAACATAGAAAGATGGAGTTAATTCCATACCTTTTTTAACGAATGAC ACGAGTTCTCTGTGAGATGAAGTACTGAAGATTCCCCTATAACTATAGGTGTGCATCAAATCTTTAAGGCCCCTAATCCT TTTATTTTATTCTTGATGTGTTTCCTGAACATATCCAAGAGATGATGCCTCGTTGCGTGCTTTTTTTATGGATGATATAG TTTTAGTTGGAGAATTAAAAATCAAGAGAATAAATGTAAAGTTAGAGACATGGAGACAAGCATTGGAAACACATGATTCT CGCCTACTTTGAAGTAAAATAAAGTAAATGAAATGTAAATTTAGCATGATACACATAAGTCATCACAGCCTAGAAAAATT GGTGATCATCCAATACCACAAGCATCACGACACGGCTCAAGTTTCTTTTTCCCATCATACAAAATGATGAGGGAGATAGA GGGAGATGTCAATCATAGGATCCAAGTAGGGTGGATAAAATAGAGGAATAATTTGGGTGTGATTTGTGATAAAAAAAAAG TAACCCTTGAACTTAAATGTAAAATTTGCCGCACAATTATAAGACTTAATGTTGTGTAGAACTGAATCTTGGGCAATATA AAGCCAGCAAGAAACTAAACTTGGTTCCGTAGAGATAGAATACGATAGATGAGTGAGTACACTAGAAGAGATAGGATGGG GAATACAACTATTAGATAAAAATTGGAGTAACTCCCATTGAAGAAATGATGGTAGAGTCTCGCTTTAGGTGGTTTGTTCA TGTAATAAGAAGGCCAATAGACAGAAGGATTGATCAGATGAAAGATATTTCTATAGCTAAAGGTAGACAGAGACCAAGAA AAACTATAAGCCAAATCATTTAGATATTTAGAGGTAAACAATTTATCCTTAAATTTAATACACTACAGAGTTTTATGATG TCACATTATCCATATAGCAGACACCACCTGGTGGGAAAAAGCTTCCTTATTGTGTGTTTTAACTACTGCTGCACACACGT GAGACAGGGAGAGGGAACAAAGTATCTATGGCCCACACTAATTCTATTTTATTTGATTATGCTTCTCTTAGAAAATTCTC TGTTACAGTTTTGTGTTTCTCTTCTATGTTCAATACATTCAGGTTTGCTCGTGTTGGATCAATTGTTTTAGCAATACATG ATGCTAGTGATGTGCTTCTGGAGATAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAATGGCTAGCATTGCATTTATT TTATTTGTTTTCTCATGGGTCATATTGCGCCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGGTTTGTAACAGT TCATTTCCCAGTTTACATCATTTTTGCTTCTGCTCTCTCTGGCCACATTTATTATGTGGCTTCTTATCTAGGTGAATAAC AATTTGGTGTCTCTACATAAGTCCATATATTTATTGAAACTAAAATATATTTACCCTAACACTGGAAGGATGATGGTCCT GTTGCATTTTCAGGTTCAGTTGTCATCTTTTGCAAATGTTTGCATATTTTTTTGATACATACTTAACAAAATAGAAGCTG TACTAGTTAGTATTTAATCCCTTTAATTTTTTTTATAAATTATTTTTTTTTTTCTTCTTTTTCCTGATAACTGTTAAATT TTCATGTATACTGGTGCCTTTATCACAAATTAAGTGTGTGCGGAAGCGTTTTAGTGGTTTAGATTCTGTGCTGGGGTACA ACAATGTTTCCACTCCTGGTACTTTTTGAGAGCTGTTTCAGTATCCATCATATTGTAAAACATGCATGTTCTGCTATTTC ACAAAATTACTCAGCTGAAAACTGGAATCGATTGCAACAAGTGCCACTGTGCCAGAAGAAAAAAGAAGATATATGTACTG CTGTAGGAAAAAGCTGAAGCCATTTTCTTGGTTATGGCTAGTTTCCCTAGAGGCTTTAAGATTATGTTTAGTTGTCTTGT CTGGAAGAAATGTAAAAGAAAATTTGTCAACAAGGGGAAGTTTCCAAGTGAATCTTTCTGCAGTCTTATTATAAGCACAA TAAAAGAAATCTTATTTCCGTCTGAGAAATTTTAACAATTCAATATAAGGATCAATAGTAGATCTATCCTTTTTTTTTAT AAATCATTACATTTCTCGATTTAATTGTTTAACTTTCTTCACTTTTTTTGCCAGCTATGAAGTTCTGCTCAACTTGGATA AGGAAAAGCACCGAGTGGATGGCCCAATATATTATTATGTGTTCAATAGTCTTCTATACTGTTTGCTAGTTCTCCATATT TATTGGTGGGTGTTGATATATCGGATGCTTGTTAAACAAATCCAAGCAAGAGGAAAACTTAGTGAAGATGTTCGATCAGG TAAGTTGAATCTATGCATGGCCTCCTGAT
CDS sequence (LotjaGi4g1v0153300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGATTCATCGACTCAACACCATTGACTGGCACCATGAATCTTACCCTGACTACCAGGATTTCTACCTTCTCCC CTGCTTCGCGCTCTTCTTCCCCTCGCTTCGATTCTTCCTCGATAGGTTCCTTTTTGAGAGAATGGCTAGAAGATTGATTT TTGGAAAGGGGAATGAGAAGCTGGACTACCAGACAGATGAGAGAAGTAAGAAGATTAGGAAATTTAAAGAATCAGCCTGG AAATGTATTTATTATCTATCAGCTGAGATTCTTGCTCTGTCTGTAACCTATGATGAACCGTGGTTTACTGATACGAAAAA TTTCTGGGTGGGGCCAGGGAGTCAGGTCTGGCCAGATCAAAAGATTAAGTTTGCTCGTGTTGGATCAATTGTTTTAGCAA TACATGATGCTAGTGATGTGCTTCTGGAGATAGGGAAAATGTCCAAATACAGTGGTGCTGAAACAATGGCTAGCATTGCA TTTATTTTATTTGTTTTCTCATGGGTCATATTGCGCCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGCTATGA AGTTCTGCTCAACTTGGATAAGGAAAAGCACCGAGTGGATGGCCCAATATATTATTATGTGTTCAATAGTCTTCTATACT GTTTGCTAGTTCTCCATATTTATTGGTGGGTGTTGATATATCGGATGCTTGTTAAACAAATCCAAGCAAGAGGAAAACTT AGTGAAGATGTTCGATCAGGTAAGTTGAATCTATGCATGGCCTCCTGA
Protein sequence (LotjaGi4g1v0153300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWIHRLNTIDWHHESYPDYQDFYLLPCFALFFPSLRFFLDRFLFERMARRLIFGKGNEKLDYQTDERSKKIRKFKESAW KCIYYLSAEILALSVTYDEPWFTDTKNFWVGPGSQVWPDQKIKFARVGSIVLAIHDASDVLLEIGKMSKYSGAETMASIA FILFVFSWVILRLIYYPFWILWSTSYEVLLNLDKEKHRVDGPIYYYVFNSLLYCLLVLHIYWWVLIYRMLVKQIQARGKL SEDVRSGKLNLCMAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 235 | 235 | 10.298 | ||
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 7 | 123 | 117 | 6.1E-126 | – | |
| PANTHER | 7 | 123 | 117 | 6.1E-126 | ||
| Phobius | 23 | 40 | 18 | - | – | |
| TMHMM | 23 | 40 | 18 | - | – | |
| Phobius | 41 | 155 | 115 | - | – | |
| SMART | 73 | 235 | 163 | 1.1E-35 | ||
| PANTHER | 122 | 247 | 126 | 6.1E-126 | – | |
| PANTHER | 122 | 247 | 126 | 6.1E-126 | ||
| Pfam | 123 | 228 | 106 | 1.9E-20 | ||
| Phobius | 156 | 183 | 28 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 184 | 202 | 19 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 203 | 227 | 25 | - | – | |
| Phobius | 228 | 255 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0153300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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