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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0164100 |
| Transcript ID | LotjaGi4g1v0164100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NHL repeat protein; TAIR: AT1G23880.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|A0A0B2QR98|A0A0B2QR98_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0164100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30870617..30876296) extracted from Lotus japonicus Gifu genome v1.2.
CGTTAACAGTTTTGGTCCCTCACCAGATTTCCGTCCAAAATTTAACGTTTTTGTTTGAGTTGGCTTTTTTTTAATTGATG TGGCATGAGAGTAGGAGAGAGAAAGGTTAATGGGATGTAAAAACAACACGTGCCCCTCACTTGACACAATCTGAACCCAG AATATTCATATTCTTCATCTCCTTCCTCTATCATTTTCTTCATCTTCCCTATCATAACCGAGAAAAAAACCTAAGGATAC ATCAACATCCCTCACCATCAACATCAAAACCTCCAGCAATAGATTCATTTCCACCATTGAATCAGAAAACAAAACACTTC AAAAAGAACCCCAACCACAAAACACAGGGCTAAGATTAGCAAAGAAAACCTCCATTTCTTAATGTCCTCACCCTCTCCCA TAACCAACACCACCACCAAATCTTCTCTCGTCGTCCACCACCTCCTCCCTTCCTAATCTCATTCAAAACCCCTTCTTTCC TATTCAATGTTAAGACTGAAGTGGAAGATTAGGTATTAGGAGGAAACCCCAATCTTCCCCAATTTTTTCTGAAGAGAGAG AAATATCTGAAAGGAGAGAAACCGAGCACATGTGGGAGAGAATCGATCATAAAGAGAGAGAGAGAGAGAGACAGAGAGAG AGAAAGAGAGAGAGAGAGAGAGAGAGAGATTTGAAAGAAGAGAAATTGAGCACCTAGGCTACGGAAGATACCCCAAAATC CACCATCACTGACGACCAAATCACCACCAACCCTAAGGCTCCTGACAACGCCAACAACGACGACGCCGGGCTCGAGGAAG GAGAGATCATCGACGTCGATGACTCCTCCGCCCCTTCCAAACCCTTCTCCACTGCCCTCGTCCGCCAACCCCAACATCCT CTCGAGAATTCTTTGACCTCTTGGTTCGACAACCCTTACAACAAGAGCAAGCAAGCTGCTTAGGGTAGTAACATCCGCCC CATCTACACCTTCGCCACCGTTGAGGAGTTTTGGAGGTCATGCTTCAATCTTTTCCCTTTTCTCTCTTCTTTCCCCCTTC TGGGTCCTTTCAATTTTGATTCTTTGATGTTCATTTTTCAAAATGCTTTCTTGGTGATTCAACTTACTGCAATTTTTTTA CTCTTCATTATTGTTCAGTCTTTACAATAACGTTCATCATCCTAGAAAGTTGGCTATTGGAGCACTTTTGATTTTTAGGT TTTTTATTTTATGGGTTTTTGGGTTGAATGATAGATAAAATGATGAAGAAGATGGAAGAAGATGATGAATATGATGAATC TTCTAGGTTATTACTTTTTATTTTATGGTTTAATTACATATACATATTTGTCCTTAAAACCGTTAGTTTTTAACGCAAAA CTGTTCGGAGACCAAAACTGTTAACAGAGACTATCGTTGGGGTAGCGGAATGCTACTTTAAACTTTAGGGACCCGGTTTG CACATTATTAAAACCTGGGGACCAAAAGTGCTAATAAACCAATAATAAATAAGCAAAATAATATGCCCATAAAAATAAAT TTTATTTATAACAAATTCAGGTTTAAGAATGCTGCCCCACCAGTAACTCTTGTCAACTTTTTTCCCTTCTTTTTAATATT GTCTGTTGCCTTTTTCATTCACCCTTCTCTCTCACACACTCACTCACTCAGTGGCTCTCCTCTTCTTCCTGCTAATAACT CAAATCCCCATAACATTAAACAGAAAAAACAAAAAAAATACCTTTTCCTTTTCTTTCTCTTCAGCTTCATGCTCTTTTCA TGAATTAGGGTTTCACCACCATTTTTGAAACCTTACATTTCCCACCTCCAAAGCTTGTTAAGACCTCTGGGATCAACATG GGTAAGCATCTTTTGCTACTGGGTTTCACTCTTCAGCTCCTGGTTGGCACCCTCTCAGTCTCAGCTGCACCCTCCACCAC TTCCCCTGCAAGTAAGTTCCATGCATTCTCTTCTGCTTCTAATTTGATCCAAGCTCTGATCTTTCACTCATTTTTGTTCC TGCTTGCTTCTTCAGAAATTGTTAGTGGGTTCGTCTCTAATGCTGTGCCTGCTTTCACCAAATGGGTATGGTCACTCAAG GCCACCACCAGAACGGGTATGGATCTTCCTGATGCTGAGCCTTTAATTTTTTTCCATTTTCTTCTTCTGGTGTGGATTTT GAATGTGGGTTTTCGGTTGCAGCGGTTTCCAGCAGGTCGATGATGAAGTTCGAGAGTGGGTACAGTGTGGAGACTGTGTT TGATGGAAGCAAGCTCGGAGTTGAGCCTTATGCTGTTGAGGTGTTGCCTAATGGGGAGCTTCTGATTCTGGATTCTGCTA ATAGTAACCTTTACAGAATCTCCTCCTCACTTTCTCTGTGTAAGTTTTTCAATGTGATTCATACAAGGCTTATGATTCTA TTCTGAGTGGTTGGCCAAATTTACTCTTTTGTCTGTGGCGATCGTCATGCTTTGAAAAAAAATCTTCATAACGTCTTCAA GATTAGATGTCTGATATGGTAGTTTTTTATTTTCGTTGCATCACATGGACTAGTGTTCAGATTGTACTGTACCTTGTATT TGGTACTTGTGTGCTGCATAACTTTGTTCTTTCAAGGAAGGAGAATCCTGCATCTCTTACAATGCGAAGTTGTAATGCTT TGTTTTTCCCTATATCACCTGCAGCATTCCCTCTTGTATTTTTTTCTCTTCAAATATAATCAGGAGTCTAACTACAATAA TTTAGACCATTGGTATCATGTCAGGTCCAGTGTTATCAAATATCTGCCATGGTGGAATCTCATGGCGGATTTTTGGCTCT CTGCCATAGCCGACAACCCGCCATAGTCCGCAATAACCCACCATAATCCGCTATCTGCCGTCATTATTTGTCAAATATAG CTGGGTTTTGGCTCTCTACCATAGTCCGCCATCCGCCTTTAACAACATTGGTCAGGTCACAGTCCTATTTTGTGGTTTGT TATAGATCTTCAAGTGTCAATCACAATCTCAACCATTGTTGTGCGGTACTTTACCTTCTAAAGTGATTTTGTGTGATTCT CTCACTTTAGAGGTTTCAAGGAGCAAGATCCTTTTTGGTGTATTGGCAGTGTACGATTACCATATAATTCCTATGGCTGA TTTCTCTATTCTTCACTCTGTCAGGTTTGAACAGCATAAAATGCCCTACTCAACTCCTCTTTTCATTGAAGACATCAGAA CAGTTAATTGATACAATGTGCATCTGTATATCTAATTAGTTAGATCATATCACATGATTTAATGTCACTGTAGTTCATGG TTATGAGCTTAATGCAATTTGAAGTTGGCCGATTCCTTAATTGTAATGCAATTTGAACTCTTTGTCTGTCTGTGCGCTTC TCTTTGCAACATAATTATTGTGCTAGATGAACTCTTAGCATGGGTTTATTTTGTTCAGCTGAGATATATCATGTTCATTG CAATTCTGCAGATAGCAGACCAAAGCTGGTGGCTGGATCAGCTGAAGGATATTCTGGACATGTTGATGGGAAGCTTAGAG AGGCTAGAATGAACCAGCCAAAGGGAATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTATGAATATGGCA ATTAGGAAAATTAGTGATTCAGGTAGATCAATCTCTCATCCTCCTCTGCCTTTGAGAAATTATTCTTTCAATTGTCTATG GATAACCTGCCCAAATGGTTACTTATTGCTAGATATTCTAGACTACTTACAAATCCTGTGTGTGCATACTCTTGTAATGT TATCGTAGGCCCGGTAATATTTGATTATAAAAATGTTACACTTGTCACATTAGTGTCAGAAGTGAGAACTTTTCATTGAA TGACTTCTATTTTCAGGGATCACAACGATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCATGTTGATGGACCAAGTGA AGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGCAGTTGTTCTCTACTCATTGTAGATAGAGGAAACC GAGCTATCAGAGAGGTCCAACTCCACTTTGATGACTGTGCTTATCATTATGGAAGTGGATTCCCACTTGGTAAACTAAAT CATCCATACTTTTCTGTTTAATTTTGTTATGTTATTGTTAATCACAAGTTTAGACTTATTGTCTTCAACATTACAGGTAT TGCCATGCTTGTTGCGGCTGGGTTCTTTGGGTATATGCTGGCATTGCTGCAGCGTCGGCTTGGTACAATTGTGGCATCCC AGGATGTGAGTTCTAAGCCATGTCTTCTTCTTTCTGATGCATTATACTGAATGAGACTGCTATAGAACTTGATTGTTCAA AGATGATTATGATTCTCCATTGATAGATCTTAATGAATTAACACAGTAGATATCCCGAATTATTTTGAGAACTACTGTAA TTTTAAACTTATACTTTTTAGCTGCGCCTTGTTAAGTGATAGTTAATTTGTAATAGTTGGTTACATGTATATAGTGATGG ATTTCACAATCAGTAATTTATCACTTCCTTTTTGTAGGCCCCGGTTCCGGTAACAGTGAGGTCTTCTGTTTCCCCAAGTC CATATCAGAAGCCCTTGAAATCTGTCAGGCCTCCTTTAATTTCATCTGAATATGAACATGATAAGCAGGAAGAAGGTTTC TTTGGATCACTTGCGAAGCTTCTTGCGAATGCTGGTGCATCAATGGTGGAGATAATGGGAGGATTATTTCCAGCTTTCAG AAGAAAACCACAGAGCTACCAATTTCAAAGGCAACAGCTGCTCCAACAACCTCCAAAGCAAGTAAATGATTGGCCTGCAC AGGAAAGTTTCGCGATTCCCCGTGAAGATGAGCCCCCTTCTATCGACCCAAGAACCCCAACCCCTCGAAAAACTTACCCT TTCATGTCTAAGGATGCTGAGAAAATGCAGCAGTTACGGCAAAGTAGAGCGTTCTATAGCAGTGGATGGGATGGAGATCT TCAGCAACAACAGAGACATCATCATCGCCATCAGTATAGTTCATCAGTCCCTCATACTTACTATGAACAGAGCCATGAAA CCACTAATGAGATAGTTTTTGGGGCAGTGCAGGAACAGGACAGGAATCAGGAGTCTGTTATCAAGCATGTGGAATATGGG GGCTCATTGTTTGAACATAACAATATTCGGCCTCGAATGAGTTCTTTGGGTTATGCCCACAAGTACTAAGTGTATACATT TAGGAAGTTTAGAACTAATGAAAACTCAATCCAGCTTTGGTTGGATAGAGGATGAAATCAAGTATAGTTAGGATAATGAT TTCTTTCGGTGGGATTTTAGCAAGGTGAAGTTGATGATCATAATATAAATTGTTTATTCAGTTTTGCCAAGCGTAGGTTG CTCTAATAGTATAAGCAACTCTGGCCATGAGGTTGGGGATGGGATCAGGCAAATTTTTATTGCTCTTTTTTCTGATGATC TTATCAAGGTTAAGTGTCCAATAGTTCTCTGAAAAAAATTATATAAGGCCACGGTGCATTTTAATTTAGCTGGTTACTGT ATACCTCCCGTTCAATTTATATGTTGCTGATACGGATGCCATGAGTCCATGACATAGTGAGCCGCACGTATCATAGGAGT AAAAAAAGGGCCGCACGTATCATAGGAATAAATAATATGAATTTAATTCTGCCGGAGAAGATATTTTTTCTTCTATTGTT
CDS sequence (LotjaGi4g1v0164100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGCATCTTTTGCTACTGGGTTTCACTCTTCAGCTCCTGGTTGGCACCCTCTCAGTCTCAGCTGCACCCTCCAC CACTTCCCCTGCAAAAATTGTTAGTGGGTTCGTCTCTAATGCTGTGCCTGCTTTCACCAAATGGGTATGGTCACTCAAGG CCACCACCAGAACGGCGGTTTCCAGCAGGTCGATGATGAAGTTCGAGAGTGGGTACAGTGTGGAGACTGTGTTTGATGGA AGCAAGCTCGGAGTTGAGCCTTATGCTGTTGAGGTGTTGCCTAATGGGGAGCTTCTGATTCTGGATTCTGCTAATAGTAA CCTTTACAGAATCTCCTCCTCACTTTCTCTGTATAGCAGACCAAAGCTGGTGGCTGGATCAGCTGAAGGATATTCTGGAC ATGTTGATGGGAAGCTTAGAGAGGCTAGAATGAACCAGCCAAAGGGAATAACTGTTGATGACCGAGGAAATATTTATGTT GCAGATACTATGAATATGGCAATTAGGAAAATTAGTGATTCAGGGATCACAACGATTGCTGGAGGAAAATGGAGCCGTGG AGGGGGCCATGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGCAGTTGTT CTCTACTCATTGTAGATAGAGGAAACCGAGCTATCAGAGAGGTCCAACTCCACTTTGATGACTGTGCTTATCATTATGGA AGTGGATTCCCACTTGGTATTGCCATGCTTGTTGCGGCTGGGTTCTTTGGGTATATGCTGGCATTGCTGCAGCGTCGGCT TGGTACAATTGTGGCATCCCAGGATGCCCCGGTTCCGGTAACAGTGAGGTCTTCTGTTTCCCCAAGTCCATATCAGAAGC CCTTGAAATCTGTCAGGCCTCCTTTAATTTCATCTGAATATGAACATGATAAGCAGGAAGAAGGTTTCTTTGGATCACTT GCGAAGCTTCTTGCGAATGCTGGTGCATCAATGGTGGAGATAATGGGAGGATTATTTCCAGCTTTCAGAAGAAAACCACA GAGCTACCAATTTCAAAGGCAACAGCTGCTCCAACAACCTCCAAAGCAAGTAAATGATTGGCCTGCACAGGAAAGTTTCG CGATTCCCCGTGAAGATGAGCCCCCTTCTATCGACCCAAGAACCCCAACCCCTCGAAAAACTTACCCTTTCATGTCTAAG GATGCTGAGAAAATGCAGCAGTTACGGCAAAGTAGAGCGTTCTATAGCAGTGGATGGGATGGAGATCTTCAGCAACAACA GAGACATCATCATCGCCATCAGTATAGTTCATCAGTCCCTCATACTTACTATGAACAGAGCCATGAAACCACTAATGAGA TAGTTTTTGGGGCAGTGCAGGAACAGGACAGGAATCAGGAGTCTGTTATCAAGCATGTGGAATATGGGGGCTCATTGTTT GAACATAACAATATTCGGCCTCGAATGAGTTCTTTGGGTTATGCCCACAAGTACTAA
Protein sequence (LotjaGi4g1v0164100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKHLLLLGFTLQLLVGTLSVSAAPSTTSPAKIVSGFVSNAVPAFTKWVWSLKATTRTAVSSRSMMKFESGYSVETVFDG SKLGVEPYAVEVLPNGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARMNQPKGITVDDRGNIYV ADTMNMAIRKISDSGITTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLIVDRGNRAIREVQLHFDDCAYHYG SGFPLGIAMLVAAGFFGYMLALLQRRLGTIVASQDAPVPVTVRSSVSPSPYQKPLKSVRPPLISSEYEHDKQEEGFFGSL AKLLANAGASMVEIMGGLFPAFRRKPQSYQFQRQQLLQQPPKQVNDWPAQESFAIPREDEPPSIDPRTPTPRKTYPFMSK DAEKMQQLRQSRAFYSSGWDGDLQQQQRHHHRHQYSSSVPHTYYEQSHETTNEIVFGAVQEQDRNQESVIKHVEYGGSLF EHNNIRPRMSSLGYAHKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 498 | 498 | 1.5E-274 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 498 | 498 | 1.5E-274 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 23 | 7 | - | – | |
| Phobius | 24 | 242 | 219 | - | – | |
| Gene3D | 30 | 229 | 200 | 4.3E-33 | ||
| SUPERFAMILY | 73 | 230 | 158 | 7.32E-10 | – | |
| Pfam | 145 | 170 | 26 | 9.6E-5 | ||
| TMHMM | 240 | 262 | 23 | - | – | |
| Phobius | 243 | 263 | 21 | - | – | |
| Phobius | 264 | 498 | 235 | - | – | |
| MobiDBLite | 376 | 396 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0164100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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