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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001258
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.891s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0104399.1
n.a. NHL domain-containing protein isoform 2 [Theobroma cacao] gi|508708508|gb|EOY00405.1| chr0 44656360 44661351 +
2 domain predictions
1 GO term
Lj0g3v0104399.3
n.a. NHL domain-containing protein isoform 2 [Theobroma cacao] gi|508708508|gb|EOY00405.1| chr0 44657248 44659865 +
2 domain predictions
1 GO term
Lj1g3v4790660.2
n.a. PREDICTED: NHL repeat-containing protein 2-like [Glycine max] gi|356571070|ref|XP_003553704.1| chr1 57675826 57695962 +
2 domain predictions
1 GO term
Lj1g3v4790660.3
n.a. PREDICTED: NHL repeat-containing protein 2-like [Glycine max] gi|356571070|ref|XP_003553704.1| chr1 57675826 57695962 +
2 domain predictions
1 GO term
Lj2g3v1378940.1
n.a. NHL domain-containing protein isoform 3 [Theobroma cacao] gi|508708509|gb|EOY00406.1| chr2 21816841 21819932 -
2 domain predictions
1 GO term
Lj2g3v1378940.2
n.a. NHL domain-containing protein isoform 2 [Theobroma cacao] gi|508708508|gb|EOY00405.1| chr2 21816841 21818058 -
2 domain predictions
1 GO term
Lj3g3v1064840.1
n.a. NHL domain-containing protein isoform 1 [Theobroma cacao] gi|508721539|gb|EOY13436.1| chr3 14375682 14379020 +
2 domain predictions
1 GO term
LotjaGi1g1v0748400.1
n.a. NHL repeat-containing protein 2; TAIR: AT1G56500.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2; TrEMBL-Plants: tr|I1NBR0|I1NBR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0748400 LjG1.1_chr1 132085084 132104635 +
2 domain predictions
1 GO term
LotjaGi1g1v0748400.2
n.a. NHL repeat-containing protein 2; TAIR: AT1G56500.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2; TrEMBL-Plants: tr|I1NBR0|I1NBR0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0748400 LjG1.1_chr1 132085392 132102731 +
2 domain predictions
1 GO term
LotjaGi1g1v0748400.3
n.a. NHL repeat-containing protein 2; TAIR: AT1G56500.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2; TrEMBL-Plants: tr|A0A072U549|A0A072U549_MEDTR Haloacid dehalogenase-like hydrolase family protein; Found in the gene: LotjaGi1g1v0748400 LjG1.1_chr1 132085419 132102731 +
2 domain predictions
1 GO term
LotjaGi3g1v0040600.1
n.a. NHL repeat protein; TAIR: AT3G14860.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|K7M265|K7M265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0040600 LjG1.1_chr3 4388573 4393491 -
2 domain predictions
1 GO term
LotjaGi4g1v0164100.1
n.a. NHL repeat protein; TAIR: AT1G23880.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|A0A0B2QR98|A0A0B2QR98_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0164100 LjG1.1_chr4 30870617 30876296 -
2 domain predictions
1 GO term
LotjaGi4g1v0164100.2
n.a. NHL repeat protein; TAIR: AT1G70280.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|A0A0B2QR98|A0A0B2QR98_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0164100 LjG1.1_chr4 30871108 30874097 -
2 domain predictions
1 GO term