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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0181600 |
Transcript ID | LotjaGi4g1v0181600.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AMP deaminase; TAIR: AT2G38280.1 AMP deaminase, putative / myoadenylate deaminase; Swiss-Prot: sp|Q84NP7|AMPD_ORYSJ Probable AMP deaminase; TrEMBL-Plants: tr|A0A1D6M2L3|A0A1D6M2L3_MAIZE Uncharacterized protein; Found in the gene: LotjaGi4g1v0181600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:38259806..38260337) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATCAGAAGCATCTCGTCCGCTTCATCAAATCAAAATTAAGAAAAGAACCGGATGAGGTGAAAATCTACTTTGGGGT TCTACTTAACTATTTTGTGAGACCATGATGTTGTAATGCTGTTTCCCTTCCGTTTTTCCCATATATTTATCCGATTAGTA GTTCTTTTTAATTTTTCTATTGGTATTAACCTATGTTTACAGGTTGTAATATTTAGAGATGGAAAGTATATGACACTTAA GGAGGTGTTTGAGAGTTTGGATTTGACCGGGTATGCATTTTTGTTTCTGACCTATTCATAAGTATGAATATATTTATATG CAAGCATGTCTCTAGGTTTTCTGATTGGTTGCAATTATCATGCAGATATGATCTGAATGTTGATTTGTTGGACGTCCATG CAGATAAGAGCACATTTCATAGATTTGATAAATTCAACCTAAAGTACAATCCTTGTGGGCAGAGCAGACTCAGAGAGATA TTTTTAAAGCAAGATAATCTTATCCAGGGTTAGTTTGAAAATGAGAATCTGA
CDS sequence (LotjaGi4g1v0181600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAGAAGCATCTCGTCCGCTTCATCAAATCAAAATTAAGAAAAGAACCGGATGAGGTTGTAATATTTAGAGATGG AAAGTATATGACACTTAAGGAGGTGTTTGAGAGTTTGGATTTGACCGGATATGATCTGAATGTTGATTTGTTGGACGTCC ATGCAGATAAGAGCACATTTCATAGATTTGATAAATTCAACCTAAAGTACAATCCTTGTGGGCAGAGCAGACTCAGAGAG ATATTTTTAAAGCAAGATAATCTTATCCAGGGTTAG
Protein sequence (LotjaGi4g1v0181600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQKHLVRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE IFLKQDNLIQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 91 | 91 | 7.1E-66 | – | |
Gene3D | 1 | 91 | 91 | 4.1E-45 | – | |
Pfam | 1 | 64 | 64 | 3.9E-13 | ||
PANTHER | 1 | 91 | 91 | 7.1E-66 | ||
SUPERFAMILY | 1 | 90 | 90 | 6.05E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | AMP deaminase activity | Catalysis of the reaction: AMP + H2O = IMP + NH3. | ||
Molecular function | Deaminase activity | Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3). | ||
Biological process | IMP salvage | Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis. |
Expression pattern of LotjaGi4g1v0181600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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