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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0181600 |
Transcript ID | LotjaGi4g1v0181600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AMP deaminase; TAIR: AT2G38280.1 AMP deaminase, putative / myoadenylate deaminase; Swiss-Prot: sp|O80452|AMPD_ARATH AMP deaminase; TrEMBL-Plants: tr|A0A072U298|A0A072U298_MEDTR AMP deaminase; Found in the gene: LotjaGi4g1v0181600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:38250721..38252506) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCACCCCTTAGCAATAATTCCCTTTTCTTGGATTATCATCGCAACCCACTGCCCATGTTTTTCCAGCGAGGTCTTAA CGTCTCTCTCTCTACGGATGATCCTTTGCAAATTCATTTGACAAAAGAGCCACTGCTGGAAGAATATAGTGTTGCAGCAA AGGTTGCTTTCTACCAAACCCCTACCGTCCTTTGAAAGTTGGTGGAATATTCTGTTGTCTTTCGTAGGGCTCACATATTT TACTCAAACACATGCTCTGCAGGTATGGAAACTTTCTTCTTGTGATCTATGTGAGATAGCCAGAAATTCTGTATACCAAT CTGGATTCTCACATCCAGCCAAGGTAATTGAGAAGACAACTTTAGAGTATTTTGCTTCTGCTCATCAGTACTTCACGCAA AATGTTGATTGTCAATTGATATATTGAATTTGATTGTATATGACAGGAACCTTATCTATTTACTATATTAAAATATATCC ACTTCTAATAACTGTGTAGTGTGTAGTGATTCTTTTATAATTACTATTAATGATAGGGTTAATCCTCATATTGGTCCCTG TGGTTGTGTTGCCGTCTGAAATTAGTCCCTCCCCGGAAAATTTACAAAAGTGGGTCCTCGCATTTGGAAAGTGTGTGGAG CAGGTCCTCGCCGGAGCCCGGAGCTCCGGCGAGTGATGATTTGGAACGCTGACCGGGTTTACTTATGTGACGTGGCAAGG GAAAAAAATAAAAAAAAATAAAAACCCTAAATTAATCTGCTCCACACACTTTCCAAATGCGAGGACCCACTTTTGCAAAT TTTTCGGGGAGGGACTAATTTCAGACGGCGACACAACCACAGGGACCAATATGATGATTAACCCTTAATGATATTTACCT ATGATAATTCTGTTCTAGACCGGTTCTACCCTAATTAATATATTTAAGACTATCTTTAATTTTTCTTTTGCTAATTATTT TTTACAATATCTTACCTCACAGTAGATATTCATATGTTTAGAATTTTGGAATTCTTTATCTATTTATTATTTCTTTGGGA GGGGGTTATAGAATTGTAGTTTGAAAGTTTTGAATCTTATATGCTCATTTTTTTAATAACATTATCTTACACCAAAGTTG TGAAGGCTATACACGAGCTTAAACTTGTACGCTTCTACACAGCGAGAGAACTTTATGTACGTTTGTTGGTGTCAAATTGT TGGTGTTGACAAGCCTAAAATAACATTATATGTGTATTTGGATACATAAATACATTTTTTTCGAATCCATAAAGAGTTAT GTTTACTATTTATCTTGAAGTGCGGGCTAATGTCTATTTGTACTAATGCAAATGTATATCCAAATATTCGAACATGATTT ATATTGTTTAGGTCTTCTATTTGTATATCAGTTAAGTGATCACTCTATTTTTACGTAGGCTTCCCTAGAATCTTGGTTTG CTTGTTTATTCCCTGACTCGTGAATTTCTTCATTTTCTGTTATCATAATTTTTCTTCTTTCACAGTTACACTGGCTTGGC GATAAATATTTCTTGAGTGGTTCTGAAGGAAATGATATTCATAAGACAAATGTACCCGATTTGAGGGTCTCTTTCCGATA CGAGGTGGAAAATTTGAAACAAACATTTAATGCTTGCAGTTTGAAATTTTTCTTTATTATTTTGGTTGTCTTCCTTATAT TCTTTCTTGCTTACTATGATTTTTGGAGTTTATGCAGACATGGAAGGAGGAAATGCAATATATTTACGCTGGTCAAGCCA ACTTTCCTGAAGATGTAGATCCATGA
CDS sequence (LotjaGi4g1v0181600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCCCTTAGCAATAATTCCCTTTTCTTGGATTATCATCGCAACCCACTGCCCATGTTTTTCCAGCGAGGTCTTAA CGTCTCTCTCTCTACGGATGATCCTTTGCAAATTCATTTGACAAAAGAGCCACTGCTGGAAGAATATAGTGTTGCAGCAA AGGTATGGAAACTTTCTTCTTGTGATCTATGTGAGATAGCCAGAAATTCTGTATACCAATCTGGATTCTCACATCCAGCC AAGTTACACTGGCTTGGCGATAAATATTTCTTGAGTGGTTCTGAAGGAAATGATATTCATAAGACAAATGTACCCGATTT GAGGGTCTCTTTCCGATACGAGACATGGAAGGAGGAAATGCAATATATTTACGCTGGTCAAGCCAACTTTCCTGAAGATG TAGATCCATGA
Protein sequence (LotjaGi4g1v0181600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPLSNNSLFLDYHRNPLPMFFQRGLNVSLSTDDPLQIHLTKEPLLEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHPA KLHWLGDKYFLSGSEGNDIHKTNVPDLRVSFRYETWKEEMQYIYAGQANFPEDVDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 136 | 136 | 1.4E-83 | – | |
Gene3D | 1 | 136 | 136 | 2.9E-67 | – | |
Pfam | 1 | 86 | 86 | 8.5E-37 | ||
PANTHER | 1 | 136 | 136 | 1.4E-83 | ||
SUPERFAMILY | 1 | 124 | 124 | 1.1E-46 | ||
ProSitePatterns | 29 | 35 | 7 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | AMP deaminase activity | Catalysis of the reaction: AMP + H2O = IMP + NH3. | ||
Biological process | Purine ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar. | ||
Molecular function | Deaminase activity | Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3). | ||
Biological process | IMP salvage | Any process which produces inosine monophosphate from derivatives of it, without de novo synthesis. |
Expression pattern of LotjaGi4g1v0181600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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