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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0197000 |
| Transcript ID | LotjaGi4g1v0197000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycerol-3-phosphate transporter; TAIR: AT4G17550.1 Major facilitator superfamily protein; Swiss-Prot: sp|O23596|GLPT4_ARATH Putative glycerol-3-phosphate transporter 4; TrEMBL-Plants: tr|I1K0V0|I1K0V0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0197000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:45293553..45295962) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAACAACAATGCGATTCACGGCGGGGGAAAATCCCGCCGGGAATTCTTCTAATCCGCGGCAAGGATTGGAACCTCCA CACCTACCGCTACATGGTTCTGTTCATCACATTCATCGCCTACGTTTGCTACCACGCTTCACGAAAAGGCACCGGCATAG TCAAAAGCGTGCTCTGCCCTGTCCCAAACAGAACCAAAATCCACGGTTGGAGCCCCTTCAATGGCCCAGAAGGAACTTCC AAGTTGGGAGAAATCGATGTGGCGTTCTTGGCTTGTTACTCTCTAGGGATGTATGTTGCTGGGCACTTAGGGGATACCCT GGATTTGCGATTGTTCCTCACGGTGGGGATGATGGGGAGTGGAGTTTTTGTGGGGCTTTTTGGGATGGGGTATTTCTGGA ATGTTCATGAGTTTTGGTTTTTTCTGGTGATGCAGATGGTGGCGGGGTTGTTTCAGGCGACGGGGTGGCCGTCGGTGGTG GCGGTGATTGGGAACTGGTTTGGGAAGAGGAAGAGGGGGCTGATAATGGGGGTTTGGAATGCGCATACTTCGGTTGGGAA TATTAGTGGGTCGCTTCTTGCGGCGAGTGTTTTGGATTATGGGTGGGGGTGGTGTTTTGTTGTGCTTGGTGGGGTGATGG TGTTTGGAGGGGTTGTTGTTTATTTGTTTCTGGCTGCGTATCCGGAGGATGTCGGGTTTTCGTCGATTAATCAGGGGGAT GAAGAGGCTCAAGGAGGTAAAGATGGTGGTGGTGGGGGTGAAGGGGAGAGTGGTGGTGTTTCCAGGAAGAGCATAGGGCT TGTTGAAGCTTGCATGATACCAGGAGTGATCACTTTTGCTTTGTGCCTGTTCTTTGCCAAGCTTGTTGCCTACACTTTTC TCTATTGGTTGCCATTTTACTTGACTCAGACAGGTCAGCTGATAGGAATTCTAAATTGTTATGTCATAAGTCATAACTCA TAAGTAATATATAAACCATATATAAAATGATTTGTAGACATCCGCATAGTGCAGACAAACGCTCGAAAAAGAGGAAGAAA TGAGAGAAATAATAAAAGTGATATACAATAGAAAAAAGAGATACGGAGATAAACAAATTGTCTATTGAATGTTTGCACTA TTTGTATGTTGGGGGTGAATGAATCAAAATCCCGTCTACAATAATTCTTTTCAACAAAACTATTTGTCAGTAGATGTGAT TCATGTAGGTTCTACCTAATAAGTATCAGGACCCAGATATTTTAGTGAGACAAAAAGTGTACTTGCATTCCTCTTCACAA TATGTGATTTATCCCTTTTAGAGACCTTATCATGTAGGACTTAAGAGCTTTTCATGTGTGGTTGCTTTTGCAAGATGGCT CTAAAGTGAATTCTTGGTCTTTTACAAATCTCAATCTAAGTTATGGATAATCTACATATGTAGTTTGTTAAAAAAAGTGC TTGCTGTGCATGTGGTTTTGAATTACTAATACATGTGGTGTTGAATTACTAATACATGTGGTTTTGAATTACTTGTTTCC TCTGCTTTCTGACAGATGAAAATATAACAGCAGAATTGACTAGCATGAGACCCTTAAAACATGTGTAGTTTGGTTTATTT CATTGGTTAAAAAACCTATCAAATTCACTCTTCTGGTTTTTTTCCGTATAAACTGCACAAACGTTGCATTTGATAATGAG GCCAATCCCTTGAAATCCAAATTGCATTGTATCTTTATCTGTCTTATAAATTGTCATTTTCCTCTTGCAGAAATTGGTGG GAAGTACATCTCTGTTAAATCTGCTGGAAACCTTTCAACCATGTTCGATGTGGGGGGCATTGTTGGGGGCATTCTTGCAG GCCACATATCTGATAGGCTCAATGCTCGCGCTATAACCGCAGCCAGCTTCTTGTTTGCAGCGATTCCTTCCATGTTTTTA TACAGATCATATGGAAGTGTTTCCATGAATGCCAATATTGCACTCATGATGGTGACTGGATTATTAGTAAATGGACCCTA TGCACTCATCACTACAGCTGTCTCTGCGGATTTGGGTACGCACAGTTCTCTTAAAGGGAATTCTCGTGCTCTGGCTACAG TTACTGCTATTATAGATGGTACCGGATCAGTTGGTGCAGCTCTTGGCCCTCTTCTTACTGGGTTTATCTCAACAAAGGGG TGGAATGGAGTTTTCACTATGCTAATCGTTGGGGCTTTTATTGCTGGGCTTCTTTTGACGCCTTTGATCATAGCTGAAAT CACAGAAAGAACGGGCAAACCTAGCGAACAGCAAAATCTTGAAGGTAAAACATTCAAAGTATTAAACCAATGGGGACGAG TCATATAATTAATTTCAATCTGCTGCTTCTCCTTTCTTTTGTGAATCTAGCACCTTGCTCATGACAATATCTATTTTATG GATAAAGTAG
CDS sequence (LotjaGi4g1v0197000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGTTCATCACATTCATCGCCTACGTTTGCTACCACGCTTCACGAAAAGGCACCGGCATAGTCAAAAGCGTGCT CTGCCCTGTCCCAAACAGAACCAAAATCCACGGTTGGAGCCCCTTCAATGGCCCAGAAGGAACTTCCAAGTTGGGAGAAA TCGATGTGGCGTTCTTGGCTTGTTACTCTCTAGGGATGTATGTTGCTGGGCACTTAGGGGATACCCTGGATTTGCGATTG TTCCTCACGGTGGGGATGATGGGGAGTGGAGTTTTTGTGGGGCTTTTTGGGATGGGGTATTTCTGGAATGTTCATGAGTT TTGGTTTTTTCTGGTGATGCAGATGGTGGCGGGGTTGTTTCAGGCGACGGGGTGGCCGTCGGTGGTGGCGGTGATTGGGA ACTGGTTTGGGAAGAGGAAGAGGGGGCTGATAATGGGGGTTTGGAATGCGCATACTTCGGTTGGGAATATTAGTGGGTCG CTTCTTGCGGCGAGTGTTTTGGATTATGGGTGGGGGTGGTGTTTTGTTGTGCTTGGTGGGGTGATGGTGTTTGGAGGGGT TGTTGTTTATTTGTTTCTGGCTGCGTATCCGGAGGATGTCGGGTTTTCGTCGATTAATCAGGGGGATGAAGAGGCTCAAG GAGGTAAAGATGGTGGTGGTGGGGGTGAAGGGGAGAGTGGTGGTGTTTCCAGGAAGAGCATAGGGCTTGTTGAAGCTTGC ATGATACCAGGAGTGATCACTTTTGCTTTGTGCCTGTTCTTTGCCAAGCTTGTTGCCTACACTTTTCTCTATTGGTTGCC ATTTTACTTGACTCAGACAGAAATTGGTGGGAAGTACATCTCTGTTAAATCTGCTGGAAACCTTTCAACCATGTTCGATG TGGGGGGCATTGTTGGGGGCATTCTTGCAGGCCACATATCTGATAGGCTCAATGCTCGCGCTATAACCGCAGCCAGCTTC TTGTTTGCAGCGATTCCTTCCATGTTTTTATACAGATCATATGGAAGTGTTTCCATGAATGCCAATATTGCACTCATGAT GGTGACTGGATTATTAGTAAATGGACCCTATGCACTCATCACTACAGCTGTCTCTGCGGATTTGGGTACGCACAGTTCTC TTAAAGGGAATTCTCGTGCTCTGGCTACAGTTACTGCTATTATAGATGGTACCGGATCAGTTGGTGCAGCTCTTGGCCCT CTTCTTACTGGGTTTATCTCAACAAAGGGGTGGAATGGAGTTTTCACTATGCTAATCGTTGGGGCTTTTATTGCTGGGCT TCTTTTGACGCCTTTGATCATAGCTGAAATCACAGAAAGAACGGGCAAACCTAGCGAACAGCAAAATCTTGAAGCACCTT GCTCATGA
Protein sequence (LotjaGi4g1v0197000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLFITFIAYVCYHASRKGTGIVKSVLCPVPNRTKIHGWSPFNGPEGTSKLGEIDVAFLACYSLGMYVAGHLGDTLDLRL FLTVGMMGSGVFVGLFGMGYFWNVHEFWFFLVMQMVAGLFQATGWPSVVAVIGNWFGKRKRGLIMGVWNAHTSVGNISGS LLAASVLDYGWGWCFVVLGGVMVFGGVVVYLFLAAYPEDVGFSSINQGDEEAQGGKDGGGGGEGESGGVSRKSIGLVEAC MIPGVITFALCLFFAKLVAYTFLYWLPFYLTQTEIGGKYISVKSAGNLSTMFDVGGIVGGILAGHISDRLNARAITAASF LFAAIPSMFLYRSYGSVSMNANIALMMVTGLLVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAALGP LLTGFISTKGWNGVFTMLIVGAFIAGLLLTPLIIAEITERTGKPSEQQNLEAPCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 436 | 436 | 0.0 | – | |
| Phobius | 1 | 55 | 55 | - | – | |
| PANTHER | 1 | 446 | 446 | 6.5E-210 | – | |
| PANTHER | 1 | 446 | 446 | 6.5E-210 | – | |
| Gene3D | 1 | 210 | 210 | 6.2E-38 | – | |
| PIRSF | 1 | 450 | 450 | 2.4E-124 | ||
| SUPERFAMILY | 3 | 433 | 431 | 9.16E-55 | ||
| ProSiteProfiles | 5 | 438 | 434 | 22.012 | ||
| Pfam | 8 | 366 | 359 | 6.8E-34 | ||
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 56 | 73 | 18 | - | – | |
| Phobius | 74 | 79 | 6 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 80 | 102 | 23 | - | – | |
| Phobius | 103 | 107 | 5 | - | – | |
| Phobius | 108 | 136 | 29 | - | – | |
| TMHMM | 117 | 136 | 20 | - | – | |
| Phobius | 137 | 142 | 6 | - | – | |
| Phobius | 143 | 164 | 22 | - | – | |
| Phobius | 165 | 169 | 5 | - | – | |
| Phobius | 170 | 193 | 24 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 194 | 239 | 46 | - | – | |
| Gene3D | 238 | 442 | 205 | 5.6E-35 | – | |
| Phobius | 240 | 265 | 26 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 266 | 284 | 19 | - | – | |
| TMHMM | 284 | 306 | 23 | - | – | |
| Phobius | 285 | 303 | 19 | - | – | |
| Phobius | 304 | 309 | 6 | - | – | |
| Phobius | 310 | 331 | 22 | - | – | |
| TMHMM | 316 | 335 | 20 | - | – | |
| Phobius | 332 | 342 | 11 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 343 | 368 | 26 | - | – | |
| Phobius | 369 | 379 | 11 | - | – | |
| Phobius | 380 | 402 | 23 | - | – | |
| TMHMM | 384 | 406 | 23 | - | – | |
| Phobius | 403 | 413 | 11 | - | – | |
| TMHMM | 413 | 435 | 23 | - | – | |
| Phobius | 414 | 435 | 22 | - | – | |
| Phobius | 436 | 455 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0197000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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