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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011701
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 124 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 7.875s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064419.1
n.a. PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 1 [Glycine max] gi|356532044|ref|XP_003534584.1| chr0 22212625 22218080 -
2 domain predictions
2 GO terms
Lj0g3v0071849.1
n.a. PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cicer arietinum] gi|502180691|ref|XP_004516695.1| chr0 26454285 26459744 -
2 domain predictions
2 GO terms
Lj0g3v0071849.2
n.a. PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cicer arietinum] gi|502180691|ref|XP_004516695.1| chr0 26454285 26462715 -
2 domain predictions
2 GO terms
Lj0g3v0071849.3
n.a. PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cicer arietinum] gi|502180691|ref|XP_004516695.1| chr0 26454285 26462715 -
2 domain predictions
2 GO terms
Lj0g3v0080199.1
n.a. nodule-specific protein Nlj70 [Lotus japonicus] gi|3329366|gb|AAC39500.1| chr0 31095989 31098233 -
2 domain predictions
2 GO terms
Lj0g3v0100509.1
n.a. PREDICTED: probable anion transporter 3, chloroplastic-like [Glycine max] gi|356520987|ref|XP_003529140.1| chr0 42481774 42485758 -
2 domain predictions
2 GO terms
Lj0g3v0102219.1
n.a. Sodium-dependent phosphate transport protein [Medicago truncatula] gi|358346124|ref|XP_003637121.1| chr0 43436317 43444903 +
2 domain predictions
2 GO terms
Lj0g3v0114899.1
n.a. PREDICTED: protein spinster-like [Glycine max] gi|356552876|ref|XP_003544788.1| chr0 50427402 50431221 -
2 domain predictions
2 GO terms
Lj0g3v0132319.1
n.a. PREDICTED: sugar transport protein 10-like [Glycine max] gi|356530254|ref|XP_003533697.1| chr0 60385794 60387684 +
2 domain predictions
2 GO terms
Lj0g3v0170199.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Glycine max] gi|356517722|ref|XP_003527535.1| chr0 81485115 81486140 +
2 domain predictions
2 GO terms
Lj0g3v0170209.1
n.a. n.a. chr0 81485115 81486140 +
2 domain predictions
2 GO terms
Lj0g3v0170219.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Cicer arietinum] gi|502180015|ref|XP_004516549.1| chr0 81486233 81489774 +
2 domain predictions
2 GO terms
Lj0g3v0191909.1
n.a. PREDICTED: hexuronate transporter-like [Cicer arietinum] gi|502140119|ref|XP_004504065.1| chr0 93782465 93785551 +
2 domain predictions
2 GO terms
Lj0g3v0191909.2
n.a. PREDICTED: hexuronate transporter-like [Cicer arietinum] gi|502140119|ref|XP_004504065.1| chr0 93782465 93785551 +
2 domain predictions
2 GO terms
Lj0g3v0248269.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr0 128702861 128704683 +
2 domain predictions
2 GO terms
Lj0g3v0266179.2
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Cicer arietinum] gi|502181348|ref|XP_004516783.1| chr0 137835065 137837906 -
2 domain predictions
2 GO terms
Lj0g3v0336449.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X2 [Cicer arietinum] gi|502174137|ref|XP_004515445.1| chr0 176181193 176186168 -
2 domain predictions
2 GO terms
Lj1g3v0437880.1
n.a. PREDICTED: probable transporter MCH1-like [Cicer arietinum] gi|502098650|ref|XP_004491285.1| chr1 5937366 5942367 -
2 domain predictions
2 GO terms
Lj1g3v0437880.2
n.a. PREDICTED: probable transporter MCH1-like [Cicer arietinum] gi|502098650|ref|XP_004491285.1| chr1 5937366 5942367 -
2 domain predictions
2 GO terms
Lj1g3v0438930.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357454707|ref|XP_003597634.1| chr1 5954920 5959124 -
2 domain predictions
2 GO terms
Lj1g3v2264740.1
n.a. PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max] gi|356509042|ref|XP_003523261.1| chr1 26523264 26527978 +
2 domain predictions
2 GO terms
Lj1g3v2626310.1
n.a. PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 1 [Glycine max] gi|356532044|ref|XP_003534584.1| chr1 30544148 30555672 +
2 domain predictions
2 GO terms
Lj1g3v3462920.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr1 40237070 40238892 -
2 domain predictions
2 GO terms
Lj1g3v3646440.1
n.a. PREDICTED: high affinity nitrate transporter 2.7-like [Fragaria vesca subsp]. vesca] gi|470141271|ref|XP_004306358.1| chr1 42093062 42095959 +
2 domain predictions
2 GO terms
Lj1g3v3690130.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Cicer arietinum] gi|502180015|ref|XP_004516549.1| chr1 42444875 42448418 +
2 domain predictions
2 GO terms
Lj1g3v3690320.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Cicer arietinum] gi|502180015|ref|XP_004516549.1| chr1 42513282 42526106 +
2 domain predictions
2 GO terms
Lj1g3v4626560.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508726927|gb|EOY18824.1| chr1 55196975 55199187 -
2 domain predictions
2 GO terms
Lj2g3v0345050.1
n.a. PREDICTED: probable anion transporter 2, chloroplastic-like [Cicer arietinum] gi|502157148|ref|XP_004510775.1| chr2 5603610 5609679 +
2 domain predictions
2 GO terms
Lj2g3v1468360.1
n.a. Spinster-like protein [Medicago truncatula] gi|357485271|ref|XP_003612923.1| chr2 23431115 23440506 +
2 domain predictions
2 GO terms
Lj2g3v1803090.1
n.a. Major facilitator superfamily protein isoform 1 [Theobroma cacao] gi|508699280|gb|EOX91176.1| chr2 27259661 27266500 +
2 domain predictions
2 GO terms
Lj2g3v2234080.1
n.a. PREDICTED: probable anion transporter 4, chloroplastic-like [Glycine max] gi|356553048|ref|XP_003544870.1| chr2 33016031 33022057 -
2 domain predictions
2 GO terms
Lj3g3v0461970.1
n.a. PREDICTED: probable anion transporter 5-like [Glycine max] gi|356563838|ref|XP_003550165.1| chr3 5019990 5022710 -
2 domain predictions
2 GO terms
Lj3g3v0462240.1
n.a. PREDICTED: probable anion transporter 5-like [Fragaria vesca subsp]. vesca] gi|470111107|ref|XP_004291794.1| chr3 5147026 5147532 -
2 domain predictions
2 GO terms
Lj3g3v0797540.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X1 [Cicer arietinum] gi|502174133|ref|XP_004515444.1| chr3 9602569 9607834 +
2 domain predictions
2 GO terms
Lj3g3v3069010.1
n.a. membrane transporter [Lotus japonicus] gi|13539545|emb|CAC35729.1| chr3 38371818 38374311 -
2 domain predictions
2 GO terms
Lj3g3v3069020.1
n.a. membrane transporter [Lotus japonicus] gi|13539545|emb|CAC35729.1| chr3 38372162 38391557 -
2 domain predictions
2 GO terms
Lj3g3v3069030.1
n.a. membrane transporter [Lotus japonicus] gi|13539545|emb|CAC35729.1| chr3 38383493 38386300 +
2 domain predictions
2 GO terms
Lj3g3v3069040.1
n.a. membrane transporter [Lotus japonicus] gi|13539545|emb|CAC35729.1| chr3 38388975 38391557 -
2 domain predictions
2 GO terms
Lj3g3v3069050.1
n.a. membrane transporter [Lotus japonicus] gi|13539545|emb|CAC35729.1| chr3 38389251 38391533 -
2 domain predictions
2 GO terms
Lj3g3v3640070.1
n.a. Phosphate starvation-induced gene 3 isoform 1 [Theobroma cacao] gi|508775632|gb|EOY22888.1| chr3 44344670 44348366 -
2 domain predictions
2 GO terms
Lj4g3v0409540.1
n.a. PREDICTED: protein spinster homolog 1-like [Glycine max] gi|356519493|ref|XP_003528407.1| chr4 5270297 5276911 +
2 domain predictions
2 GO terms
Lj4g3v1085060.1
n.a. PREDICTED: high affinity nitrate transporter 2.5-like [Glycine max] gi|356526779|ref|XP_003531994.1| chr4 15747737 15750426 +
2 domain predictions
2 GO terms
Lj4g3v1440930.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357454707|ref|XP_003597634.1| chr4 22421421 22424117 +
2 domain predictions
2 GO terms
Lj4g3v1440940.1
n.a. Nodulin-like protein [Medicago truncatula] gi|357454707|ref|XP_003597634.1| chr4 22422519 22424117 +
2 domain predictions
2 GO terms
Lj4g3v1946670.1
n.a. PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max] gi|356546138|ref|XP_003541488.1| chr4 27232028 27234441 +
2 domain predictions
2 GO terms
Lj4g3v1946670.2
n.a. PREDICTED: probable anion transporter 6, chloroplastic-like [Glycine max] gi|356546138|ref|XP_003541488.1| chr4 27232028 27240832 +
2 domain predictions
2 GO terms
Lj4g3v2822300.1
n.a. PREDICTED: hexuronate transporter-like [Cicer arietinum] gi|502140119|ref|XP_004504065.1| chr4 37748237 37750922 +
2 domain predictions
2 GO terms
Lj5g3v0641520.1
n.a. Major facilitator superfamily protein [Theobroma cacao] gi|508716058|gb|EOY07955.1| chr5 8795469 8797970 +
2 domain predictions
2 GO terms
Lj5g3v2256180.1
n.a. PREDICTED: hippocampus abundant transcript 1 protein-like [Cicer arietinum] gi|502121138|ref|XP_004497200.1| chr5 32631423 32638072 +
2 domain predictions
2 GO terms
Lj6g3v1052420.1
n.a. PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X1 [Cicer arietinum] gi|502180042|ref|XP_004516554.1| chr6 12014417 12019503 -
2 domain predictions
2 GO terms