Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0247600 |
| Transcript ID | LotjaGi4g1v0247600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT2G02760.1 ubiquiting-conjugating enzyme 2; Swiss-Prot: sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2; TrEMBL-Plants: tr|A0A0A0KQJ6|A0A0A0KQJ6_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0247600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59905166..59907739) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGACTCCGGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGCTGCAACAAGACCCACCTGCAGGAATCAGTGGTGC CCCTCAGGATAACAACATAATGCTCTGGAATGCTGTCATATTTGGGTAAATTGGATGAAGATGCATTGTTCTGTTTGTAT TCGATCGCTTTATTTTATTTTAATAATTTCACTTTGTTTAAGTATGGATGGATAAGCAATTTCTGCTTTCTTGTCTGCTT TGTATTGCAGTCCTGATGATACTCCATGGGATGGAGGTGAGTCAGTCCTTTTACTACTACGGCTTCTATTTGAAAACAGT TTTGATTCAGTGTCAATTTGGTTACTCAATATCTTGTGTATTACTTGTATCTGTGATATTACATGAACGTGCTTTAATGG ATGATTGTAGAATTATGTTGCAAAGAACATCATACTCATTGTCCTTCCATCCTCTAAAAGATTTTGGGATGCTCTTCATA TCTGTCTAGATTAGTTAAAATATAGTGATTTTTATTGAACTTGCATATAGATACTGGTTGGTGCTTTGGTGCTATTTTAT GATTTTCTTTCTCTTCTGTTTTTGTTTTCCAATTTTAATTCTAACTATTGATTGTTATATGGTCTTACTTATATTGATGC TCTAACTGTTATGCCTGTTAGAGACTGCATGTACCCTCTTTTGAAAAATATATGTTCTCTCAGACTATCCAGCTAAACTT TATTGTACTTTATTTTCGCAAAAAAATTAGGTGCTCACGGTCAAGTAGTTTTTATGTACATATTTGGATGTCATTTTCTT TTCTGTATTTAATTATATGTATTTTCATAACTTCATGTCTACATATTGAGTTATTCAGGTACGTTTAAGTTGACTCTCCA ATTTACTGAGGACTATCCTAACAAGCCACCCACTGTGAGATTTGTCTCTAGAATGTTTCACCCAAACAGTAAGTTTTACG CGGAAAACATTGACCTTCTTATACATTAGTTAGCTATCTTGCTATTAATGTCTTTTTCTGCTCTGGGCAGTTTATGCGGA TGGAAGTATCTGTTTGGACATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATTCTCACTTCTATCCAGG TATCTTCTTGTAATCAATAACATCATAAGGTTATTAAACCATGAATTGCTAATTTTTTACCTGTGAGTCATAATCCTTAA CAAATAGTAAGATTTAGAGACACAATGAAGCGTAGATTGATATATTATGTATCATACAGATGATGCATATTGCTCAATGT AATAATTTTTAACTACTGAGTTGACTGAATAACTTGGCCAGAAGTCTCACAAAACAATATCACAAGTCAGAACAAATGCA GAGCAATCCTAGCCAAATAACATGCACATAGAGTGAGCGCTGTGAAACCTTTTTAGCAGAATGGAAACTGAGCTATTCAA AAGCCAATTAGGGTGCATGGAGTGAGTTAGAGTGCATGACTGTGATACTCCTGTGTCAGAATCATGAAAACAGAGCATTG GAATTGTCAGATAGGATATGTTTAGTAACATTATCTAGATCCTAAACAGAGTTTATTTGACTTTTCAATTTCTTTTGAGA ATTAGTGAAAGAATCAAGAAAGAAAAATTAAAGTAGGCCTTGTTTGCTTTAGAACATGTTTCTTGTTTTGACTTTTAATT ATAAATGCACTTGTGTTTTACTTCCTATTTTCAAATGTTTGTATACAAAACAGTGAAAACAACGTGCTATTGTTTCCACT GTTTCCCATAGAACCAATTCTAATCTTTGAAAACAGAAAATAAAGTAAAAAACTAGATCCTCCTGTTTTGAAGACTCCTT TCTCAAATAATTATTTTGCTTATAAAGACCACACTAAGTCAAATACATGAGAGAATTTTGTTTTAGTATTCCAGATACAT ATATATATATATATATGAACTCATTAGGCACTGGGAATTGAAGCTGGTATGAATTGTGCTAATAGGCTACAAGCCTATGA TGCACATATATATATATATATATATATATATCAGTTGTTTGCCCGTCTATTGTTATTATGGTTCTAGCATATTAAATATC TATAATATGTTATGCACCATGCTTCAATGTTGCCCTGTATTGGGATCATGGTGTCAGTGGGCCTTATTGCAAGAGTATGG TCCTGTGCTGGGAACTTGGTGCCAATCTTCCCTTTTTCCAAGAGTATGGCATGGGCCATTTACTTAAGAATGGGATGACA TTGAGCATCATTTTTTGCCACTCTGATATAACCTGAAATATCTTAGCTACTAGGGTGGTTGGGGTGTAGAGAATTTTACT ATGCATGGCTGAAATGTCATATTTATGTAGAGTATTTTCATGGCATTTTTTAAAAATTGATCTATCCCTGCTCTGTAGTT GTTATTGTTAGTATGCTCTAAAAAGTAATTATTTCTTCTTGGCAGTCATTGCTTTGTGACCCCAACCCAAATTCTCCTGC AAACTCGGAAGCAGCTCGAATGTTCAGTGAGAACAAGCGTGAGTACAATCGAAGAGTGCGGGAAATTGTGGAGCAGAGTT GGACAGCTGACTAA
CDS sequence (LotjaGi4g1v0247600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACTCCGGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGCTGCAACAAGACCCACCTGCAGGAATCAGTGGTGC CCCTCAGGATAACAACATAATGCTCTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGTACGTTTA AGTTGACTCTCCAATTTACTGAGGACTATCCTAACAAGCCACCCACTGTGAGATTTGTCTCTAGAATGTTTCACCCAAAC ATTTATGCGGATGGAAGTATCTGTTTGGACATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATTCTCAC TTCTATCCAGTCATTGCTTTGTGACCCCAACCCAAATTCTCCTGCAAACTCGGAAGCAGCTCGAATGTTCAGTGAGAACA AGCGTGAGTACAATCGAAGAGTGCGGGAAATTGTGGAGCAGAGTTGGACAGCTGACTAA
Protein sequence (LotjaGi4g1v0247600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 152 | 152 | 7.9E-111 | – | |
| PANTHER | 1 | 152 | 152 | 7.9E-111 | – | |
| Gene3D | 1 | 152 | 152 | 6.1E-72 | ||
| SUPERFAMILY | 1 | 150 | 150 | 3.67E-63 | ||
| SMART | 7 | 150 | 144 | 5.4E-69 | – | |
| ProSiteProfiles | 7 | 139 | 133 | 47.38 | ||
| CDD | 7 | 145 | 139 | 5.49001E-75 | ||
| Pfam | 8 | 144 | 137 | 8.5E-53 | ||
| ProSitePatterns | 77 | 92 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0247600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…