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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0267300 |
| Transcript ID | LotjaGi4g1v0267300.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q9C7C4|EML1_ARATH Protein EMSY-LIKE 1; TrEMBL-Plants: tr|K7ML77|K7ML77_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0267300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63259403..63262599) extracted from Lotus japonicus Gifu genome v1.2.
AGTGAAAAATCACAGAGACGAAAAGATCGTCTTCTGAATCCGAACAAGGTCACTGATTTTTCTTCTCTTCTCCTTCTTAC AATTCTCCTGCTACCGTTTTCATGTACTATTTCAGTTTCTTTCTTCTTCAATTAATCAATGGAATTTTCATTATCATTAT CATAATCATGATCATTCATCGTCATTGTTGTTAATTTTTTTTTTCAGCTTTTGATTTCAAAGTTCTTCATGATTTTTTGG TTGCTCAGGAAGAATAAATTAAAACTGAGGAAACAGAAACAGAAACAGAATCAGAATTTTCCTCCATGGTTTTGTGATAT TACCTGATTTAGTAATAATAATATGATTATTTTTATGGCATTTGTTCTTGTTCTGATCAATAGCACTTTGTCATGACTGA TTGGTTTTGTTTTGTTTTGTGTTTTTTTATTTTTTATTTTGAATTTACTGTTTTTATTTGTTGTGTATTTTGATAAACTT GCAATGAGTTCTGTATCTAACTTTGATTTTGATCTTCTGCTTAAAAAAATTGTGGTCAAAATACCCACTTTGTGATTACC TCAAAGCTAGTTGTTTTTTGCTCTTAAAAGTCAAGATCTATATTAATCCAATGTGAGGGTTTCAGGATAATATTTTGTAT GTCTATTTATTGATTGCTATTATCATCCATTCCATGGCTTCTAGATGTTGAATAGTGGGTAGCTTTTAATATTTTTCCTA TTTTTTTCCCCTGAATTTTGAGTGGCTGCTTGATAATTATCCTAATAAAAATTTGAAATTTTGTCCTATTTCTTATTTTG ATTTTTTTGTTATTGAATCAGCAGGTGTTTGGGTTGAAAATTTGCTGGAAAATATTGGTGATGATGAGGTTTAAGAAAGG GACTAAGGTGGAAGTATTAAGCAAAGCCGAGGTGCCTTCTGGCGCCTGGCTATGTGCAGAGATCATCTCTGGTAATGGTC ACAACTACACTGTTAGATATGATGGATATCATGGTGCTGCTGGTGAGGCTATTGAGGAGAGGGTATCCAGGAAAGACATA AGGCCTTGCCCACCTGCACTTGAACTCGCAGAGAGTTGGAGTGCAGGTGAAGTTGTAGAGGTCTTTCAGAATTTCTCTTG GAAGATGGCTACAGTTTTGAAGGTTCTGGGGAAAAAGCACCTTTCAGTCAGGCTACTTGGATCTTCTTTGGAGTTTCAAG TGAGCAAGTTTGACATCAGGGTGAGACAGTCTTGGCACGATGACAAGTGGATAGTGGTTGGAAAGGTACCTTTATTTCGC ATGAATGTTTTTGTTTCTTTCATCTTCCTTAGCAATTGCCTAGTGTTGTTGGCTGAAAAGATGTGAATGATGGTTACACA ATACAAATTATGTTTTGAGTTGCTTTATATCGAGCTTTTGAGATTCCATTGATTCAATATATTCCATTTGCTAAAACTAA CTAGTCAAAATTTAAAAACATTGGAATTTGCTTAGGTTGTTTGTCTTGTTATGCTTTCAATATTACTAGTTTCTTGCTTT CAAATTTTCTTCAGTTCTCTTTTGTTTTTATTTTAATTAGCTTTCATGAGTGTTCTTTGTATTACTGTTTTTGGATCCTC TGTGCTGTTTAATTGTTGAATGTTTGTTGATCCCTCTTCCATCTTCAGGGTTCTGCTAGCTGTGAATATGGAAAACGTTC TAGTGCTCTGTGTCAGAAGACAGCTACAAATACAAAACTGTCAGTTTCCAATTACTATCAACCTGAAAAGAAAGAACTAA ATGTTACTTTTAAAACATTAAAACGAGGAATCGATTCACAAGTTGAGGCATGTGCTCAACCTCCCCCTAAGTTTAGGGCA ATTGAGAATGAAGGAAGGTGTCAAGTAGCAAGAGTTGGAAATCCACCCACACCACTTACACAGGTACAAGGTGTCAGTTT TCCAAGAGATGTGCTTGCTGAAGAATGTAGACCTGCTTCCATAAACAGAAGAAAAACTGGGATTTCTAATATGGACATAG AGAGGAGGATACAAACGGGGGCTGTTGGTTGTTCTTTTGGAGAAAGCTTTGGATCAAATCATGCTGATAGTGTTACATGC TCTGTTGGTAGTTGTAGTATCAATAGCAGGAATTCCCATAAATTGCAATTTCCTGTATCTGCAGGTCCTTTTGAAGATGT AGACAGTGACTCTTTTAGTGACGCTGAATCTGTCTGCCAGAGAGGGTATGAGGAAGGGAGTTGCTCCCCTCCTTCACAAG AAGAATTGGTGGAAGAAATCCATAGGTTAGAGTTGCATGCCTATCGTTGTACAATTGAGCTATTGCATGCATCAGGACCT ATAAGTTGGGAACAAGAAGCATTAGTGACAAACCTCCGTCTTTCACTCAACATATCAAATGATGAACACTTAATGATGCT AAGAAACTTGAATTCTTCTGAAAATAGTATTCATTTCAGATGACAGGAAATTTTGTCTCTTCAATATAATACAAATTTCC TAAGGGATAGAGATTCACAATAGTTTGTTCTTAGACTCATTCAACTGTAAGAAGAAAGATGGAAAATTCAATGTCTTTCA TTTATGTTTTATGACTTAGTGATGTAGATGTTAAACTAAGTGAATAAATGATCATTTTTTATCTGTTGTGTTCACTTATC CTCTTATCCCTTTTGGGCTTGTTCTTGTAGACACACTTCACCAGGATCTTTCTGGAACCTTCATCACATTATAGATTTTA AAGCCACTTGTCAGACATGATCTGCCTACTGACATTTGAAATCTAGTGGTATATTTAAATGTAGATTTATCATTGAGGAT TGATTATTAATATGCTTTATGGTATTTATGTTAGTATATTTTCTTTATTTTTATATAAGATTGTTTTGCATTCATTTCAG AGCTCTTGAATTGGAAAGAAGCTTCTGTTTTCTTTCTTAATTTGTACACACAAGCAATTCTGTAAAGGAGACCTACCTTG TTTAATACTTTTGTCTCTGTTACTCCATCATTTGGAAGTATAAACATTGTCATTTGAAGATACTAGTAATGCTTCCCTGC ATTTTCCAGGGCTGAGATGGAGGCACATAGGTGTTGCTTCCAGGTGCTACCGATGATATTGGTGCTTGCCACCTTTCTCT TGCTCTAGACAAGGGATGTTTTTTAATATGGCTCTTGATAAGCCAGCACTTTCACAAACTTGTGGAGTTCTCGCATT
CDS sequence (LotjaGi4g1v0267300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGGTTTAAGAAAGGGACTAAGGTGGAAGTATTAAGCAAAGCCGAGGTGCCTTCTGGCGCCTGGCTATGTGCAGA GATCATCTCTGGTAATGGTCACAACTACACTGTTAGATATGATGGATATCATGGTGCTGCTGGTGAGGCTATTGAGGAGA GGGTATCCAGGAAAGACATAAGGCCTTGCCCACCTGCACTTGAACTCGCAGAGAGTTGGAGTGCAGGTGAAGTTGTAGAG GTCTTTCAGAATTTCTCTTGGAAGATGGCTACAGTTTTGAAGGTTCTGGGGAAAAAGCACCTTTCAGTCAGGCTACTTGG ATCTTCTTTGGAGTTTCAAGTGAGCAAGTTTGACATCAGGGTGAGACAGTCTTGGCACGATGACAAGTGGATAGTGGTTG GAAAGGGTTCTGCTAGCTGTGAATATGGAAAACGTTCTAGTGCTCTGTGTCAGAAGACAGCTACAAATACAAAACTGTCA GTTTCCAATTACTATCAACCTGAAAAGAAAGAACTAAATGTTACTTTTAAAACATTAAAACGAGGAATCGATTCACAAGT TGAGGCATGTGCTCAACCTCCCCCTAAGTTTAGGGCAATTGAGAATGAAGGAAGGTGTCAAGTAGCAAGAGTTGGAAATC CACCCACACCACTTACACAGGTACAAGGTGTCAGTTTTCCAAGAGATGTGCTTGCTGAAGAATGTAGACCTGCTTCCATA AACAGAAGAAAAACTGGGATTTCTAATATGGACATAGAGAGGAGGATACAAACGGGGGCTGTTGGTTGTTCTTTTGGAGA AAGCTTTGGATCAAATCATGCTGATAGTGTTACATGCTCTGTTGGTAGTTGTAGTATCAATAGCAGGAATTCCCATAAAT TGCAATTTCCTGTATCTGCAGGTCCTTTTGAAGATGTAGACAGTGACTCTTTTAGTGACGCTGAATCTGTCTGCCAGAGA GGGTATGAGGAAGGGAGTTGCTCCCCTCCTTCACAAGAAGAATTGGTGGAAGAAATCCATAGGTTAGAGTTGCATGCCTA TCGTTGTACAATTGAGCTATTGCATGCATCAGGACCTATAAGTTGGGAACAAGAAGCATTAGTGACAAACCTCCGTCTTT CACTCAACATATCAAATGATGAACACTTAATGATGCTAAGAAACTTGAATTCTTCTGAAAATAGTATTCATTTCAGATGA
Protein sequence (LotjaGi4g1v0267300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNYTVRYDGYHGAAGEAIEERVSRKDIRPCPPALELAESWSAGEVVE VFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRVRQSWHDDKWIVVGKGSASCEYGKRSSALCQKTATNTKLS VSNYYQPEKKELNVTFKTLKRGIDSQVEACAQPPPKFRAIENEGRCQVARVGNPPTPLTQVQGVSFPRDVLAEECRPASI NRRKTGISNMDIERRIQTGAVGCSFGESFGSNHADSVTCSVGSCSINSRNSHKLQFPVSAGPFEDVDSDSFSDAESVCQR GYEEGSCSPPSQEELVEEIHRLELHAYRCTIELLHASGPISWEQEALVTNLRLSLNISNDEHLMMLRNLNSSENSIHFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 383 | 382 | 1.3E-167 | – | |
| PANTHER | 2 | 383 | 382 | 1.3E-167 | – | |
| SMART | 2 | 68 | 67 | 2.1E-11 | ||
| Pfam | 7 | 65 | 59 | 5.0E-16 | ||
| SMART | 71 | 127 | 57 | 1.2E-15 | ||
| Gene3D | 329 | 397 | 69 | 3.9E-9 | ||
| SUPERFAMILY | 330 | 395 | 66 | 3.01E-19 | ||
| SMART | 335 | 395 | 61 | 6.5E-22 | ||
| ProSiteProfiles | 335 | 399 | 65 | 16.164 | ||
| Pfam | 338 | 393 | 56 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0267300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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