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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF05641
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 77 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.036s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004899.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr0 1855118 1855600 +
2 domain predictions
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Lj0g3v0043969.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr0 14499693 14500323 +
2 domain predictions
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Lj0g3v0043989.1
n.a. RNA binding protein [Medicago truncatula] gi|357437873|ref|XP_003589212.1| chr0 14512412 14513028 -
2 domain predictions
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Lj0g3v0060049.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr0 19959471 19966338 +
2 domain predictions
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Lj0g3v0088389.1
n.a. plant Tudor-like protein [Arabidopsis thaliana] gi|15221452|ref|NP_172123.1| chr0 36099889 36100174 -
2 domain predictions
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Lj0g3v0094179.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr0 39545231 39545662 -
2 domain predictions
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Lj0g3v0103099.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr0 43947756 43949889 +
2 domain predictions
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Lj0g3v0121169.1
n.a. Chromodomain helicase-DNA-binding protein [Medicago truncatula] gi|357490843|ref|XP_003615709.1| chr0 53988188 53993007 -
2 domain predictions
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Lj0g3v0121169.2
n.a. Chromodomain helicase-DNA-binding protein [Medicago truncatula] gi|357490843|ref|XP_003615709.1| chr0 53988188 53992838 -
2 domain predictions
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Lj0g3v0200589.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr0 98951682 98952158 -
2 domain predictions
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Lj0g3v0205929.1
n.a. RNA binding protein [Medicago truncatula] gi|357448811|ref|XP_003594681.1| chr0 102523812 102526320 -
2 domain predictions
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Lj0g3v0205939.1
n.a. agenet domain-containing protein [Arabidopsis thaliana] gi|15230734|ref|NP_187304.1| chr0 102526459 102528084 -
2 domain predictions
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Lj0g3v0237369.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr0 123113512 123114251 +
2 domain predictions
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Lj0g3v0283899.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr0 147253789 147254534 +
2 domain predictions
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Lj0g3v0337599.1
n.a. RNA binding protein [Medicago truncatula] gi|357466301|ref|XP_003603435.1| chr0 176797288 176798852 -
2 domain predictions
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Lj1g3v1912850.1
n.a. RNA binding protein [Medicago truncatula] gi|357466301|ref|XP_003603435.1| chr1 22725584 22728778 +
2 domain predictions
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Lj1g3v1912850.2
n.a. RNA binding protein [Medicago truncatula] gi|357466301|ref|XP_003603435.1| chr1 22725584 22728778 +
2 domain predictions
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Lj1g3v1912850.4
n.a. RNA binding protein [Medicago truncatula] gi|357466301|ref|XP_003603435.1| chr1 22725584 22731149 +
2 domain predictions
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Lj2g3v0635700.1
n.a. agenet domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297849236|ref|XP_002892499.1| chr2 9851462 9856975 +
2 domain predictions
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Lj2g3v0635710.1
n.a. RNA binding protein [Zea mays] gi|226508782|ref|NP_001151949.1| chr2 9851462 9857144 +
2 domain predictions
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Lj2g3v0635810.1
n.a. agenet domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297849236|ref|XP_002892499.1| chr2 9900185 9905211 +
2 domain predictions
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Lj2g3v1155580.1
n.a. Agenet and bromo-adjacent homology (BAH) domain-containing protein-like protein [Medicago truncatula] gi|357488501|ref|XP_003614538.1| chr2 18310896 18314271 +
2 domain predictions
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Lj2g3v2001580.1
n.a. PREDICTED: serine-rich adhesin for platelets-like isoform X4 [Cicer arietinum] gi|502160284|ref|XP_004511695.1| chr2 29968204 29979211 +
2 domain predictions
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Lj2g3v2001580.2
n.a. Agenet domain containing protein expressed [Medicago truncatula] gi|357482073|ref|XP_003611322.1| chr2 29968204 29979211 +
2 domain predictions
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Lj2g3v2001580.3
n.a. Agenet domain containing protein expressed [Medicago truncatula] gi|357482073|ref|XP_003611322.1| chr2 29968204 29977668 +
2 domain predictions
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Lj4g3v1330360.1
n.a. RNA binding protein [Medicago truncatula] gi|357479531|ref|XP_003610051.1| chr4 20291667 20292149 +
2 domain predictions
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Lj4g3v1844680.1
n.a. RNA binding protein [Medicago truncatula] gi|357477933|ref|XP_003609252.1| chr4 25650215 25652783 -
2 domain predictions
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Lj5g3v1529970.1
n.a. T31J12.4 [Arabidopsis thaliana] gi|4337176|gb|AAD18097.1| chr5 22240112 22244032 -
2 domain predictions
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Lj5g3v1529970.2
n.a. T31J12.4 [Arabidopsis thaliana] gi|4337176|gb|AAD18097.1| chr5 22240112 22244032 -
2 domain predictions
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Lj5g3v1871860.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr5 26725195 26731219 -
2 domain predictions
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Lj5g3v2183680.1
n.a. agenet domain-containing protein [Arabidopsis thaliana] gi|42561856|ref|NP_172403.3| chr5 31688800 31691523 +
2 domain predictions
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Lj5g3v2183680.2
n.a. agenet domain-containing protein [Arabidopsis thaliana] gi|42561856|ref|NP_172403.3| chr5 31689135 31691523 +
2 domain predictions
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Lj6g3v0775960.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr6 7378091 7383328 +
2 domain predictions
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Lj6g3v0775960.3
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr6 7380051 7383328 +
2 domain predictions
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Lj6g3v1742770.1
n.a. agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] gi|22327858|ref|NP_200371.2| chr6 19562010 19567916 +
2 domain predictions
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Lj6g3v2243320.1
n.a. agenet domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297849236|ref|XP_002892499.1| chr6 26058005 26063912 -
2 domain predictions
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LotjaGi0g1v0000600.1
n.a. Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|F4I8W1|DUF2_ARATH DUF724 domain-containing protein 2; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000600 LjG1.1_chr0 1444172 1444685 -
2 domain predictions
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LotjaGi0g1v0000700.1
n.a. Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000700 LjG1.1_chr0 1490137 1491128 +
2 domain predictions
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LotjaGi0g1v0000800.1
n.a. Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|F4I8W1|DUF2_ARATH DUF724 domain-containing protein 2; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi0g1v0000800 LjG1.1_chr0 1504361 1505355 +
2 domain predictions
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LotjaGi1g1v0118400_LC.1
n.a. RING/FYVE/PHD zinc finger protein; TAIR: AT5G58610.4 PHD finger transcription factor; Swiss-Prot: sp|F4IXE7|IDM1_ARATH Increased DNA methylation 1; TrEMBL-Plants: tr|G7JZJ8|G7JZJ8_MEDTR PHD zinc finger protein; Found in the gene: LotjaGi1g1v0118400_LC LjG1.1_chr1 18696963 18703992 -
2 domain predictions
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LotjaGi1g1v0386200.1
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1JUF7|I1JUF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 LjG1.1_chr1 86959035 86965341 +
2 domain predictions
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LotjaGi1g1v0386200.2
n.a. Agenet domain protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|O22897|DUF6_ARATH DUF724 domain-containing protein 6; TrEMBL-Plants: tr|I1JUF8|I1JUF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 LjG1.1_chr1 86959035 86965341 +
2 domain predictions
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LotjaGi1g1v0386200.3
n.a. Agenet domain protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|O22897|DUF6_ARATH DUF724 domain-containing protein 6; TrEMBL-Plants: tr|I1JUF8|I1JUF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 LjG1.1_chr1 86959038 86964819 +
2 domain predictions
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LotjaGi1g1v0386200.4
n.a. Plant tudor-like RNA-binding protein; TAIR: AT4G32440.1 Plant Tudor-like RNA-binding protein; Swiss-Prot: sp|Q08A72|EML4_ARATH Protein EMSY-LIKE 4; TrEMBL-Plants: tr|I1JUF7|I1JUF7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386200 LjG1.1_chr1 86959038 86964819 +
2 domain predictions
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LotjaGi1g1v0674600_LC.1
n.a. Agenet domain protein; TAIR: AT1G09320.1 agenet domain-containing protein; Swiss-Prot: sp|Q8H0V4|DUF7_ARATH DUF724 domain-containing protein 7; TrEMBL-Plants: tr|A0A1J7H2H3|A0A1J7H2H3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0674600_LC LjG1.1_chr1 124120549 124124281 +
2 domain predictions
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LotjaGi2g1v0188800_LC.1
n.a. Agenet domain-containing protein; TAIR: AT1G09320.1 agenet domain-containing protein; Swiss-Prot: sp|O22897|DUF6_ARATH DUF724 domain-containing protein 6; TrEMBL-Plants: tr|V4TB28|V4TB28_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0188800_LC LjG1.1_chr2 61856660 61863058 +
2 domain predictions
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LotjaGi2g1v0278400.1
n.a. Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT1G68580.2 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|K7K2M6|K7K2M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0278400 LjG1.1_chr2 75011372 75015618 +
2 domain predictions
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LotjaGi2g1v0422300_LC.1
n.a. Agenet domain protein; TAIR: AT4G17330.3 G2484-1 protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|G7JXC3|G7JXC3_MEDTR Agenet domain protein; Found in the gene: LotjaGi2g1v0422300_LC LjG1.1_chr2 92034383 92052698 +
2 domain predictions
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LotjaGi3g1v0248700.1
n.a. Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|Q8H0V4|DUF7_ARATH DUF724 domain-containing protein 7; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0248700 LjG1.1_chr3 41303058 41303850 -
2 domain predictions
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LotjaGi3g1v0249000.1
n.a. Agenet domain protein; TAIR: AT1G06340.1 Plant Tudor-like protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|I1KEN6|I1KEN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0249000 LjG1.1_chr3 41347743 41348416 -
2 domain predictions
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