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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322800 |
| Transcript ID | LotjaGi4g1v0322800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT1G19170.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0L9UYN8|A0A0L9UYN8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70096297..70100972) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGACATC GCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTGGCT TCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGAGGA GTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGGTGG GGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAGCTG AAGATGCTGTTGTGCTTGGCATTGATGTGAGTTTTCCTTTTTCTGTTCTTGACTGTTTTGTTTTTGTGTTGTTTGGTATG TCATTTATTAAGAAAAACATAGAAATGCAATTATGAAGATTTATAACTGATAAGTTCTTAAAATTAGGTGATAGTTGGAG TTGTTTTTTGTTGTGACAAATTACAGTTTCTTATGCTAAATGGCTTGAGCATTATTATTCTTATGCTTGTGTCTTTGGCT TTATGGAATTATGATATTGATCATGATCTGGGATTAACAAAGAGCACCAATGACTGTGTTATTGGTGATAACAATTGTTT TATTGATACCACTATATTTGATGGCTAGGGCTGCTGTTCAGAGCTTGTAGTTGACTGCACAACAACTTTTAATTAAGCTT TAGGGCCTAGCTTGCTTTATCTTTTTGAGCAATTTTGTTGTGCCTAGATTGTAACAGACTTTGATGTTGTCTAAAGTCAA GTTTATGGCCTGATGAATTTCTGGATACCAACCAAATTGCTGTCATATCAGCAGTTTGGCCACATGAGTACCTATATCTT AGAATATGCTTGAAATGATGACTTTAGGAGTATATATACATCTGCATATACATTGTGCATTTGGCATTGAGTGGGAAATT TCAGGCTTAATATCTGCGTTAAGTTACTAGTAGGTTATGTGTTCTGCTAAATCATCATTGATATCTTAGGCCATTAATCA CTTATATATGTAATTCTATCTATTTCTTTGATAATCTATTGCTTCAACTGCATTTCTCTTCCATTATCTCATAATTGGAC ATTTTATTTGTCATCTTATGTGATGGCTAACAGGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTA TGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGTGAGG ATCTTTCATCCTGCTTCTAGTTAGTGGAGGGGTAGCAAACTCTTCCATTCTCAACTAAAATGTCTTTACTTAATATTGAA TGTCATTGTAAGCACATTCAATTCGTTATCTTGCAATGAAGCATGATTCGTTTATATTTAGGAAAATGGAGGAATGTCAA CAGATTTTTGGAGTCTCAAGAAGGAAATAACATTGTCGAACTTATCTTTATAGTTGATATACATATATTTCAAAGGCTTA AGCTAATGGTGAACAGATATTTGAGTACTTTCTTGTTGACCAATATCTCGTTAAACTTTGAAGTATTTGTATTTGTCAGG AACCAACTATTTTAAAAGCTTCAATTATTTTCTGAGAACTTTGAATGATTTTAAATTATATTTATTACATGCCTCCTCAC GCAAGAGTACTTTGGGCTTTAGGCGTGAACATTGCACCTGGGGTGGAAATAGGCTAGGCTAAACCTTGTTTTGTGTAAAC ATGTCTGAGTTCTGACCTACTTAAAAAGTTTAAGGCCTAAGCATGGCTTATTACGTGTCAGACTTTTTTTTAGGTCTGAC CTTGTCTTCTTGAAACATTGTTCTGACCTGATAGCTATTTAATGACTTATTTCATAATAAGACCTTTACATAGGCCAACA CATCTATCTGTAAATATGCCAACAAATTTATCGGCAAACAGGCTAGAATATACTAAAACAAACATATCTATAAACAAATG ATCAGACTTATAGGCTTATAATTTTCACTGGCCCACCTTCCTTGTGATAAAACAACTTTTTATTAGAAGAACGGGGATGG CAAAAATCAAACTCTAGACCACTTCATGGAGTCTGATACTATGCCATAAACCAACTATTTCAAAAGTATAGGTTGTTGGA TGAAGATACATGAATAGTTTTATATTAAATTTTTAAATATACTGATTTTAATCAACAGTGGTTCTACATGTGTTGAGAAA CCAGTTGATTTAGCATTTACTAACACTTCCTTCGTGTATTGGTGCACTGCCTCATATTCTACCCCCATACCCTCATTAAA GGGAAAAGGCTTAGCATAGCATAAAGTCTTTCTTTATTCACACATCTCATCATCCACCTAATACTGTGATTGATTAAGCA ATCATCTGAAGGGTAGCACAATGCACAAGGAGAAATCCTGACCCGGATTAAATTAGTGCACTAACCACGACTCAAATTCA TTCCCCCTTCTATTTAATAGAGTATAGATAGTAATATATTCATACTATGACATCATGTATCACATGTATCATCATACCAT GGGCCTGTATATAAACAGGGCACCATGCTCAGTTGTAACTATCTATTGATGAATAACAGAAACTGTTACACTTTCTCTCT CTTCCTTTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATCTTTAATATATATATAAAGATATATATATATA TATGTATATATCTTTTACTATGTGTCATGCTTAAGCTTAATTTCTAAGTTTCTCTGATTCCACCTATTGTCATTACTGAC AGGGCATAACGGTACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGG GGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTT CATCCGTATGACTGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGG CATAGATCCTGGCAAGTATCTTCTACTGAAAACTAAACTTTATTTATATCTTGATGTATGAATTATGATATATGACTTTC TGATCGGTTCTATCCCAATCTTTGATTTGTTAGTTTTGAGGATAGCTAAACCAACTTGAAAAATGCTCCATGTAAACTAA TTTCTTATATGAGTTATATGAATATCAATACCAACTGATTCAGTGGGAGGATGGTTACTGGGGAAGGAATTTTTTCAGTG ATCCTTCTGCACTTATCATCTAAGCTTGTTTGAGGTGTCAATTTTTTGGGACATGTATCGCCAATTCTGTCGGTGATTAA TTTTGGAATTTAGACAGCAGATTTGTGCTATATGTGTAAAATGTTTTTGTCTGTTTATGTGCCAGCACAATGTACTCCAT TTAACCTGGTGTCTGTTATTATTTATCTTGCTTGTGTTTCAATTATCAATCTGAGAGATGGGCAGTTACCTTGGACTGGA ATGTTCATCATCAATATTGGTTTTGTTGTTATATAAAGAGTTCTAATAAACTTGAATTTAATGGTGCGAACAGACTCTTG CGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATCAGTATG GAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGGTCAGGTGAATCCCTAAC TCAACCAATATATACTTTTCTGCATGCCTTTCAGCATCTTGTATAACTGAAGAGTAAAAAATATAAGTTTGCATAACCGC ATAAGTGTCCCCCCATGTATAGTTGGTTTATGTTAGTATAGGAATGGGAATTGCCTTTTCTAGTGTCTGCTCATCTTGTT TTATTCTGAATTTCTATCAGTTAACATTCCTAGTTAACTTCTCTTTGCTAACCAACTCTAGTTAACTTCGATAACTGCAC AAATCTTTAGTATCTGTCTCGTCATGCATTAGGGTGTGTCATATCCTGATGATTTTATTGAATGGAACAGTGCTGGTGTC TCAATAGGCAGTGAGATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTGTATGGGATTCCCGGCGTGGTGT AAGGATTAAGACTGCAGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAACCTAACGTTCGAGAATGTCCGTG TTGGAATTGTTATGAAGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTACGGCACTTCCAGAAATCAGAGAC ATAAGCTTCACCACTGTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTAGTGAAGCGATTCCGGTGAGAAA TGTAACTTTTCGCGACATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCCTTTGTTGAAGGCCAAG TAATAGGGACCATCTTTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCTGCA TCCCAGAATGTAACAGATATAGATTATGATTTTTGA
CDS sequence (LotjaGi4g1v0322800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGACATC GCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTGGCT TCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGAGGA GTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGGTGG GGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAGCTG AAGATGCTGTTGTGCTTGGCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGGAGG GAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGGCATAACGGTAC CATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGA TCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGACTGC AAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGACTC TTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATCAGT ATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGTGCTGGTGTCTCAAT AGGCAGTGA
Protein sequence (LotjaGi4g1v0322800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVETSTLGRFHHQRLDFKRWFPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGRVPARPMPKLRPVAFNLTDFGG VGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPSGRWLTAPFNLTSHMTLFLAEDAVVLGIDDEKYWPLMPPLPSYGYGR EHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYDC KNITIKNVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYARPSMNIMIRNLVVRSMCWCLN RQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 18 | 315 | 298 | 1.4E-180 | – | |
| PANTHER | 18 | 315 | 298 | 1.4E-180 | – | |
| TMHMM | 24 | 46 | 23 | - | – | |
| Phobius | 34 | 57 | 24 | - | – | |
| Phobius | 58 | 322 | 265 | - | – | |
| Gene3D | 60 | 319 | 260 | 5.0E-80 | ||
| SUPERFAMILY | 64 | 313 | 250 | 3.61E-66 | ||
| Pfam | 168 | 292 | 125 | 6.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0322800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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