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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0322800 |
Transcript ID | LotjaGi4g1v0322800.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pectin lyase superfamily protein; TAIR: AT1G19170.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|V7C8P1|V7C8P1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0322800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70095968..70101314) extracted from Lotus japonicus Gifu genome v1.2.
TTTATGATGATCTAGTAAAAAGTAATTGTGAAAATTGGCATATATGAAATTGTCAAAATTTAAGTGCACCCTTTTAAGGA TCCAAGACTTTCACCACACTGTTACCATATCATTGTCTTCCTAGGTACCAACTTTCACCAGTTCCAGTTCCAGTTCCAGT TCCCCAAACAAGTCTGTCATCTTCTTCCCTTTCAATTCACTCCTTCAATTTATTCCTCCTTTCTCACTCATTCCCTTCCA CTCCAATCTTGGAATCCATGAGCTTCGACCAAACCCACATCGTCAGCTGCTAAATCCAACTCCATCTCGCAAAAGGGTAG TTTCTTTTTTCTCAGTCGAATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCT GGTTTCCGGCATTCTTGACATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGG CAGAGGAACATAGTCGGTGGCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTT CAATTTGACGGATTTCGGAGGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTT CCAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGT CACATGACTTTGTTTCTAGCTGAAGATGCTGTTGTGCTTGGCATTGATGTGAGTTTTCCTTTTTCTGTTCTTGACTGTTT TGTTTTTGTGTTGTTTGGTATGTCATTTATTAAGAAAAACATAGAAATGCAATTATGAAGATTTATAACTGATAAGTTCT TAAAATTAGGTGATAGTTGGAGTTGTTTTTTGTTGTGACAAATTACAGTTTCTTATGCTAAATGGCTTGAGCATTATTAT TCTTATGCTTGTGTCTTTGGCTTTATGGAATTATGATATTGATCATGATCTGGGATTAACAAAGAGCACCAATGACTGTG TTATTGGTGATAACAATTGTTTTATTGATACCACTATATTTGATGGCTAGGGCTGCTGTTCAGAGCTTGTAGTTGACTGC ACAACAACTTTTAATTAAGCTTTAGGGCCTAGCTTGCTTTATCTTTTTGAGCAATTTTGTTGTGCCTAGATTGTAACAGA CTTTGATGTTGTCTAAAGTCAAGTTTATGGCCTGATGAATTTCTGGATACCAACCAAATTGCTGTCATATCAGCAGTTTG GCCACATGAGTACCTATATCTTAGAATATGCTTGAAATGATGACTTTAGGAGTATATATACATCTGCATATACATTGTGC ATTTGGCATTGAGTGGGAAATTTCAGGCTTAATATCTGCGTTAAGTTACTAGTAGGTTATGTGTTCTGCTAAATCATCAT TGATATCTTAGGCCATTAATCACTTATATATGTAATTCTATCTATTTCTTTGATAATCTATTGCTTCAACTGCATTTCTC TTCCATTATCTCATAATTGGACATTTTATTTGTCATCTTATGTGATGGCTAACAGGATGAGAAGTATTGGCCACTGATGC CTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAA GATATTGTCATAACAGGTGAGGATCTTTCATCCTGCTTCTAGTTAGTGGAGGGGTAGCAAACTCTTCCATTCTCAACTAA AATGTCTTTACTTAATATTGAATGTCATTGTAAGCACATTCAATTCGTTATCTTGCAATGAAGCATGATTCGTTTATATT TAGGAAAATGGAGGAATGTCAACAGATTTTTGGAGTCTCAAGAAGGAAATAACATTGTCGAACTTATCTTTATAGTTGAT ATACATATATTTCAAAGGCTTAAGCTAATGGTGAACAGATATTTGAGTACTTTCTTGTTGACCAATATCTCGTTAAACTT TGAAGTATTTGTATTTGTCAGGAACCAACTATTTTAAAAGCTTCAATTATTTTCTGAGAACTTTGAATGATTTTAAATTA TATTTATTACATGCCTCCTCACGCAAGAGTACTTTGGGCTTTAGGCGTGAACATTGCACCTGGGGTGGAAATAGGCTAGG CTAAACCTTGTTTTGTGTAAACATGTCTGAGTTCTGACCTACTTAAAAAGTTTAAGGCCTAAGCATGGCTTATTACGTGT CAGACTTTTTTTTAGGTCTGACCTTGTCTTCTTGAAACATTGTTCTGACCTGATAGCTATTTAATGACTTATTTCATAAT AAGACCTTTACATAGGCCAACACATCTATCTGTAAATATGCCAACAAATTTATCGGCAAACAGGCTAGAATATACTAAAA CAAACATATCTATAAACAAATGATCAGACTTATAGGCTTATAATTTTCACTGGCCCACCTTCCTTGTGATAAAACAACTT TTTATTAGAAGAACGGGGATGGCAAAAATCAAACTCTAGACCACTTCATGGAGTCTGATACTATGCCATAAACCAACTAT TTCAAAAGTATAGGTTGTTGGATGAAGATACATGAATAGTTTTATATTAAATTTTTAAATATACTGATTTTAATCAACAG TGGTTCTACATGTGTTGAGAAACCAGTTGATTTAGCATTTACTAACACTTCCTTCGTGTATTGGTGCACTGCCTCATATT CTACCCCCATACCCTCATTAAAGGGAAAAGGCTTAGCATAGCATAAAGTCTTTCTTTATTCACACATCTCATCATCCACC TAATACTGTGATTGATTAAGCAATCATCTGAAGGGTAGCACAATGCACAAGGAGAAATCCTGACCCGGATTAAATTAGTG CACTAACCACGACTCAAATTCATTCCCCCTTCTATTTAATAGAGTATAGATAGTAATATATTCATACTATGACATCATGT ATCACATGTATCATCATACCATGGGCCTGTATATAAACAGGGCACCATGCTCAGTTGTAACTATCTATTGATGAATAACA GAAACTGTTACACTTTCTCTCTCTTCCTTTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATCTTTAATATA TATATAAAGATATATATATATATATGTATATATCTTTTACTATGTGTCATGCTTAAGCTTAATTTCTAAGTTTCTCTGAT TCCACCTATTGTCATTACTGACAGGGCATAACGGTACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAG AAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCG TGACTCTCCTTTTTGGACACTTCATCCGTATGACTGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTAT TTGAAGCTCCTAATACTGATGGCATAGATCCTGGCAAGTATCTTCTACTGAAAACTAAACTTTATTTATATCTTGATGTA TGAATTATGATATATGACTTTCTGATCGGTTCTATCCCAATCTTTGATTTGTTAGTTTTGAGGATAGCTAAACCAACTTG AAAAATGCTCCATGTAAACTAATTTCTTATATGAGTTATATGAATATCAATACCAACTGATTCAGTGGGAGGATGGTTAC TGGGGAAGGAATTTTTTCAGTGATCCTTCTGCACTTATCATCTAAGCTTGTTTGAGGTGTCAATTTTTTGGGACATGTAT CGCCAATTCTGTCGGTGATTAATTTTGGAATTTAGACAGCAGATTTGTGCTATATGTGTAAAATGTTTTTGTCTGTTTAT GTGCCAGCACAATGTACTCCATTTAACCTGGTGTCTGTTATTATTTATCTTGCTTGTGTTTCAATTATCAATCTGAGAGA TGGGCAGTTACCTTGGACTGGAATGTTCATCATCAATATTGGTTTTGTTGTTATATAAAGAGTTCTAATAAACTTGAATT TAATGGTGCGAACAGACTCTTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATA AAAAGTGGCTGGGATCAGTATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTC TATGGTCAGGTGAATCCCTAACTCAACCAATATATACTTTTCTGCATGCCTTTCAGCATCTTGTATAACTGAAGAGTAAA AAATATAAGTTTGCATAACCGCATAAGTGTCCCCCCATGTATAGTTGGTTTATGTTAGTATAGGAATGGGAATTGCCTTT TCTAGTGTCTGCTCATCTTGTTTTATTCTGAATTTCTATCAGTTAACATTCCTAGTTAACTTCTCTTTGCTAACCAACTC TAGTTAACTTCGATAACTGCACAAATCTTTAGTATCTGTCTCGTCATGCATTAGGGTGTGTCATATCCTGATGATTTTAT TGAATGGAACAGTGCTGGTGTCTCAATAGGCAGTGAGATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTG TATGGGATTCCCGGCGTGGTGTAAGGATTAAGACTGCAGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAAC CTAACGTTCGAGAATGTCCGTGTTGGAATTGTTATGAAGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTAC GGCACTTCCAGAAATCAGAGACATAAGCTTCACCACTGTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTA GTGAAGCGATTCCGGTGAGAAATGTAACTTTTCGCGACATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAG TGTGCCTTTGTTGAAGGCCAAGTAATAGGGACCATCTTTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGG ACAGCTGGTTAAGCATTCTGCATCCCAGAATGTAACAGATATAGATTATGATTTTTGAGGTGTCATGTTAACTAATTCCT GGTCTCTTGTTCCACGTATTATCGGGGCTCAATTTATGTCTGTTGTATTTGATCAGTTTTGTGGGGTTGGAGCATTCAAT TCATACTTTTTTTTTTTTTGCACCTTTTGTAATTTCACTTCCTTGCTCCATTTTATAGCTTTCTGGAGTGGAGTAGTTGT AAATACGGAAAATTTTCAGATGCTTAGATAAGTTTATTTGATTACACAAATACATAGCCTATGGTGTGAGCATTTTACCT CCATGTGATATCAATATAAAAGGAACTGCATGAGGCAACAACATCGGAAAGATGAAGTAAGAAAATT
CDS sequence (LotjaGi4g1v0322800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGAC ATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTG GCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGA GGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGG TGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAG CTGAAGATGCTGTTGTGCTTGGCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGG AGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGGCATAACGG TACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTC AGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGAC TGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGA CTCTTGCGAGGATATGTTGATAGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATC AGTATGGAATTGCTTATGCAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGGTCAGTGCTGGT GTCTCAATAGGCAGTGAGATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTGTATGGGATTCCCGGCGTGG TGTAAGGATTAAGACTGCAGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAACCTAACGTTCGAGAATGTCC GTGTTGGAATTGTTATGAAGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTACGGCACTTCCAGAAATCAGA GACATAAGCTTCACCACTGTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTAGTGAAGCGATTCCGGTGAG AAATGTAACTTTTCGCGACATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCCTTTGTTGAAGGCC AAGTAATAGGGACCATCTTTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCT GCATCCCAGAATGTAACAGATATAGATTATGATTTTTGA
Protein sequence (LotjaGi4g1v0322800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVETSTLGRFHHQRLDFKRWFPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGRVPARPMPKLRPVAFNLTDFG GVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPSGRWLTAPFNLTSHMTLFLAEDAVVLGIDDEKYWPLMPPLPSYGYG REHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYD CKNITIKNVTILAPVFEAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYARPSMNIMIRNLVVRSMVSAG VSIGSEMSGGVSNVTVENLFVWDSRRGVRIKTAAGRGGYVRQITYRNLTFENVRVGIVMKTDYNEHPDDGYDPTALPEIR DISFTTVHGHGVRVPVRIHGSEAIPVRNVTFRDMSVGLTYKKKHIFQCAFVEGQVIGTIFPSPCENLDRYNEQGQLVKHS ASQNVTDIDYDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 20 | 20 | - | – | |
PANTHER | 19 | 484 | 466 | 3.2E-287 | – | |
PANTHER | 19 | 484 | 466 | 3.2E-287 | – | |
Phobius | 21 | 47 | 27 | - | – | |
TMHMM | 21 | 43 | 23 | - | – | |
Phobius | 48 | 492 | 445 | - | – | |
Gene3D | 61 | 456 | 396 | 1.3E-118 | ||
SUPERFAMILY | 65 | 465 | 401 | 7.19E-110 | ||
Pfam | 169 | 451 | 283 | 1.8E-50 | ||
SMART | 241 | 268 | 28 | 170.0 | ||
SMART | 269 | 290 | 22 | 160.0 | ||
SMART | 303 | 325 | 23 | 570.0 | ||
SMART | 331 | 352 | 22 | 640.0 | ||
SMART | 360 | 381 | 22 | 340.0 | ||
SMART | 394 | 416 | 23 | 7800.0 | ||
SMART | 421 | 442 | 22 | 8100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0322800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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