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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336300 |
| Transcript ID | LotjaGi4g1v0336300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT3G06720.1 importin alpha isoform 1; Swiss-Prot: sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b; TrEMBL-Plants: tr|I1L0U6|I1L0U6_SOYBN Importin subunit alpha; Found in the gene: LotjaGi4g1v0336300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71660743..71664938) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTAATGGTGTCTGCTCGGTTGATAATAATCTGCAGCTGGAAGCCACCGCGCAGTTCCGCAAGCTTCTTTCAATGGG TAACGTTGAACGATTCGCTTTTAATCGCTATTCTCTGAACCTGTTGTGTGGCTTAGCGGTTTTTATTGATTTTTGGCTGC AGAACGGAACCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTACCGCGCTTTGTTGAGTTTCTTGTTAGGGAGGATT TCCCTCAACTTCAGGTTTGTTTTTCCTTGTGGATGCTTAAACCGTTAGTTGAAATTTGTTTTTCTCATTAGTTATTCATG TTACCTGTTATTTTCTTTTTAGTTTGAGGCTGCGTGGGCTCTCACTAATATAGCATCGGGAACTTCTGAGCATACTAAGG TGGTGATTGATCATGGAGCTGTTCCTATCTTTGTGAAGCTACTTAATTCACCTAATGGTGATGTTCGGGAGCAGGTACTT TATATTTGAATGGGTCAATTTGAGCATTTTCATTTTTTAATCTGCTGAACATTAATTCTATGAAATTCTTCCAGGCAGTG TGGGCTTTGGGGAATATTGCTGGTGACTCCCCAATGTGTCGTGATCTAGTGCTTAGCCACGGTGCCCTCGTCGCACTGTT GTCCCAGTTTAATGAGCATGCGAAACTTTCAATGCTGAGAAATGCCACATGGACATTGTCAAACTTTTGTAGGGGAAAAC CTCAGCCTGCATTTGAGCTGGTAGCATCTATACATTTCTCTTGTCATTGGTTAATATAAATCAGAGTATCAAACTTTTAA GATAGGTTCTCTCGGCACATTTTTATTGCGAATAATTTTCATGGCAGGTGAGTCCCGCACTTCCAGCCCTTGCGCGTTTA ATTTTTTCTAATGACGATGAAGTTTTGACGGATGCCTGCTGGGCATTATCATATCTCTCTGATGGCGCAAATGATAAAAT CCAAGCTGTAATTGAGTCAGGTGCATGTGAGCGACTGGTGCAGCTTCTTCTGTGAGTATTAATTCTACTGTACAATATTA AAAAATAATCTATTGTTTCAATTGTTGACTGCCCTGACTTTGTATAATGGCTTTTCAGGCATCCAACTCCTTCAGTGGTG ATTCCGGCCCTTCGTACTGCTGGAAATATTGTGACTGGAGATGATATGCAGACTCAGGTAATGACTTGTAAGCAGTGTAA TCAAATATCGGCCTTGGTGGAATCTCATGGAAGGTTTTTGGCTCTCCGCCATGACCGATATCCTGCCATGATCCACCATC ATTATTTGTCAAATATGGCGGTTTTTTCGCCTCTCCGCCATAGTCCACCATCCGCCATCATTAACAGCTGCTTGTATAGG CGCTGTAATAAGCAATTTTTTGTATGATTAAAAGGAGCGGTGATGCATTTTCATTTATTTGTCCAGATTGTTCCAAATAT TTTCTTATTCAACTCTAGTTCTGTTGAAAGTTAAAATCAATAATCATTGCATTGGCAGAATGAACTGAGTTATCTGTCTC TTTGTGCTCACTGTCCTTTTTCATCCTGTTTTGTGCATTTGTATCACTACGTTTAGAGTCTCCTAATTCTGTCAAAATTT TCCCCTCAGTGTATTATCAATCATGGTGCACTCCCTTCCCTTTTGAGCCTGTTGACACATAATCATAAAAAAAGCATCAA GAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGTAAGCCATCAGATCCCAATTT TTTGGCCATTGTTTTTTTATGTTGTCAATGCTTCTATTTTTCTATTCGCTATGTTGAATCTACGTACATATTTAATTGAA CTACTCAATGGAGAATTTAAGCTTAAAGTTGCAGGAGTTTGTCTTGTCTTTCCAGGCTTGGATCATACCTCATTGTTTTT GTTGGTCCTATCCCCAGTATTGTAATGGACATTCTAACCAACCTAGATTTAGTTATTCCTTGGGAATGCCAACAGAAAAG AATAATGATCGATTTAGTCTCAACCCCACCTTTTCTATCTTTCTTTCCCCTCTAATTACAAAATGGGAAATCTATTAAAT ATAATGCGGTGTGCCATTGACCTTTTGTATTCTGCTGTCTCATAAGAATAAGAGTTTGTCTGTTTGTATGAGATCACAAC TAGCTCATGAAATTTGGCTGATCTGTGTACTACCACTGGCCTTTTGTATTGCAGCCTCTCGTAAGAAAAGAGTTTGTCTG TTTGAATATGAAGCAGTGTTATCAAATAGCGGCTATAGCGGCCGCGACCCGCTATAGCGTAGCGGATTTTAGGGCCACCG CAATCGCTACGCCGCGACATAGCGGCCACCGCGAGAAATGCAATTGCGGCCGCGACGGCCGTAGCGGCGCTGTAAGCTAA ACGGAAATAGCGGATTTTGAGGAATACTGCACGTTTTTTTTAGTTTTAGGGTTTTTAAATATGGTAATTCTTGACTAGTG GGCCACCAAGTGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTTCCTTTTTCTGTTTCACTGCTTTACTGCCCA ATTAACTCCCCATTAATTATTTTTTTCTATATTTACGCTTCATCATGAAGAATCACGGCAGAATTGAAAAGGTTTCCAAA ATCCTAATTCTCCTTCTCTCATCCTCCTTCTACAAGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTTCCTTTT TCTGTTTCACTGTTTTAAGACTTGTGTTTGGTTTATGTTGTTTTAAGTCCTTTGACATTTGTTTTGAGCTGGTGGCAGCC TTTAATAATTAAAATTTGGTTGTTAAAAATGATGATTTTATGCAGTTTTTATTGTTATGTGATAAGCTGTTGTTTTTTAT GCAGTTTTTATTTGTTCATTTCAAATGTTTCTGCTCTAGTATTGCAATAGATGTCTGATAAGCTGCTGTTTTTTTATAAT ATTTTACTTATTTTAACCGCTATGTGGTTACCGCTATTTGCCCGCGACGCTATCCGCTAAACACAATAGCGGATTTTGGC CTCGCCGCGATTTTTTGCGATCGCGATTTGACAACACTGATATGAAGTCACAGCTAGCTTATGAAATTTGACTTATCAGC TGGATTAGATGGAATGTGTTTTCTGTTTCATCACAAGTTGATTGTTGTTCAGAGATAAATTTGTCTAATAGAAGTTGAGA GAATTGGAGAGGAAAATGAATTGTGTATTGAATTGTGATAGAGAGACAGATTATATATTTTGTTTCCAATAGAGACAGTG ATGGAACTGCCTTACTAACTTCTAATCTATCTAACTGAACAGTAACAGAAACTGACTGGTAACAGAGGACTAATAACTGC CTAAGCTAGAATCACATACAATTAACAGTAGTATAACTACAGTGTGCTCTTCGAGTACCTACGCTGTAATAGTCACAAGT TACAACTAGACCACTGAAGGCGGAGGTATTAATCTGGCTGGAAGCATGGCTTTGGATTTTATATTTTCTAATTTCTAATT CAAGAGCTCAAATGGGTTGTGGTCTATATGTTATTATAAACCTTAACATTCAGTTTTTTGTGTTGCTGGTTAGCTTATGC GTTTTATTTATATAGGCTGTTATTGAAGCTGGTCTCATTGCTCCACTTGTCAATCTTCTCCAAAATGCTGAGTTTGAAGT TAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACGTCTGGTGGAACAAATGAGCAGATTAAGTAAGTATTTCATTAAA CTGGTTCTTTATCATGCAAACTTTGTGAGATTACAATATTCACTTATCTTATGGGTTTACAAGGTACATGGCGGATCAGG GTTGCATAAAACCTCTTTGTGATCTGCTTGTCTGTCCTGATCCAAGAATAGTGACTGTCTGTTTGGAGGGCTTAGAGAAC ATTCTGAAAGTTGGAGAAGCTGAGAGGAACTTGGGTAACTCTGAAGATGTCAACTTGTATGCTCAGATGATTGAGGATGC TGACGGATTGGAGAAGATAGATAACCTGCAAAATCATGACAACAACGAAATATATGAGAAGGTTGTTAAAATTCTTGAAA CATACTGGTCAGAAGATGTAGATGAGACACTACCTTCAAGTGATGGTGCCCCACCGGAATTCAATTTTGGAAGTAACAAT CCTTCAGTACCATCTGGAGGATTCAACTTCATCTGA
CDS sequence (LotjaGi4g1v0336300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAATGGTGTCTGCTCGGTTGATAATAATCTGCAGCTGGAAGCCACCGCGCAGTTCCGCAAGCTTCTTTCAATGGA ACGGAACCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTACCGCGCTTTGTTGAGTTTCTTGTTAGGGAGGATTTCC CTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACTAATATAGCATCGGGAACTTCTGAGCATACTAAGGTGGTGATTGAT CATGGAGCTGTTCCTATCTTTGTGAAGCTACTTAATTCACCTAATGGTGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGG GAATATTGCTGGTGACTCCCCAATGTGTCGTGATCTAGTGCTTAGCCACGGTGCCCTCGTCGCACTGTTGTCCCAGTTTA ATGAGCATGCGAAACTTTCAATGCTGAGAAATGCCACATGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCTGCA TTTGAGCTGGTGAGTCCCGCACTTCCAGCCCTTGCGCGTTTAATTTTTTCTAATGACGATGAAGTTTTGACGGATGCCTG CTGGGCATTATCATATCTCTCTGATGGCGCAAATGATAAAATCCAAGCTGTAATTGAGTCAGGTGCATGTGAGCGACTGG TGCAGCTTCTTCTGCATCCAACTCCTTCAGTGGTGATTCCGGCCCTTCGTACTGCTGGAAATATTGTGACTGGAGATGAT ATGCAGACTCAGTGTATTATCAATCATGGTGCACTCCCTTCCCTTTTGAGCCTGTTGACACATAATCATAAAAAAAGCAT CAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGCTGTTATTGAAGCTGGTC TCATTGCTCCACTTGTCAATCTTCTCCAAAATGCTGAGTTTGAAGTTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCT ACGTCTGGTGGAACAAATGAGCAGATTAAGTACATGGCGGATCAGGGTTGCATAAAACCTCTTTGTGATCTGCTTGTCTG TCCTGATCCAAGAATAGTGACTGTCTGTTTGGAGGGCTTAGAGAACATTCTGAAAGTTGGAGAAGCTGAGAGGAACTTGG GTAACTCTGAAGATGTCAACTTGTATGCTCAGATGATTGAGGATGCTGACGGATTGGAGAAGATAGATAACCTGCAAAAT CATGACAACAACGAAATATATGAGAAGGTTGTTAAAATTCTTGAAACATACTGGTCAGAAGATGTAGATGAGACACTACC TTCAAGTGATGGTGCCCCACCGGAATTCAATTTTGGAAGTAACAATCCTTCAGTACCATCTGGAGGATTCAACTTCATCT GA
Protein sequence (LotjaGi4g1v0336300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNGVCSVDNNLQLEATAQFRKLLSMERNPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVID HGAVPIFVKLLNSPNGDVREQAVWALGNIAGDSPMCRDLVLSHGALVALLSQFNEHAKLSMLRNATWTLSNFCRGKPQPA FELVSPALPALARLIFSNDDEVLTDACWALSYLSDGANDKIQAVIESGACERLVQLLLHPTPSVVIPALRTAGNIVTGDD MQTQCIINHGALPSLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFEVKKEAAWAISNA TSGGTNEQIKYMADQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAERNLGNSEDVNLYAQMIEDADGLEKIDNLQN HDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNFGSNNPSVPSGGFNFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 419 | 419 | 6.4E-211 | ||
| PIRSF | 1 | 452 | 452 | 3.2E-199 | ||
| PANTHER | 1 | 452 | 452 | 1.0E-256 | – | |
| PANTHER | 1 | 452 | 452 | 1.0E-256 | – | |
| SUPERFAMILY | 5 | 421 | 417 | 9.6E-119 | ||
| SMART | 28 | 69 | 42 | 3.7E-9 | ||
| Pfam | 29 | 69 | 41 | 2.7E-10 | ||
| ProSiteProfiles | 39 | 82 | 44 | 10.202 | ||
| SMART | 71 | 111 | 41 | 6.7E-10 | ||
| Pfam | 72 | 110 | 39 | 1.0E-12 | ||
| ProSiteProfiles | 82 | 124 | 43 | 12.162 | ||
| SMART | 113 | 154 | 42 | 3.3 | ||
| Pfam | 113 | 154 | 42 | 1.1E-6 | ||
| SMART | 156 | 195 | 40 | 5.7E-4 | ||
| Pfam | 165 | 195 | 31 | 7.2E-8 | ||
| ProSiteProfiles | 166 | 208 | 43 | 9.537 | ||
| SMART | 197 | 237 | 41 | 0.0015 | ||
| Pfam | 198 | 236 | 39 | 1.1E-6 | ||
| SMART | 239 | 280 | 42 | 2.0E-8 | ||
| Pfam | 240 | 280 | 41 | 1.1E-10 | ||
| ProSiteProfiles | 250 | 293 | 44 | 11.462 | ||
| Pfam | 282 | 321 | 40 | 1.0E-12 | ||
| SMART | 282 | 322 | 41 | 6.3E-10 | ||
| ProSiteProfiles | 293 | 328 | 36 | 9.187 | ||
| Pfam | 325 | 363 | 39 | 1.5E-7 | ||
| SMART | 325 | 365 | 41 | 5.3E-7 | ||
| Pfam | 380 | 428 | 49 | 7.2E-21 | ||
| MobiDBLite | 423 | 453 | 31 | - | – | |
| MobiDBLite | 434 | 453 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi4g1v0336300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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