Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi4g1v0357500
Transcript ID	LotjaGi4g1v0357500.1
Related isoforms 2	LotjaGi4g1v0357500.2 LotjaGi4g1v0357500.3
Lotus japonicus genome version	Gifu v1.2
Description	Prolyl 3-hydroxylase 1; TAIR: AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp\|Q6JHU8\|P3H1_CHICK Prolyl 3-hydroxylase 1; TrEMBL-Plants: tr\|I1KRR4\|I1KRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:73611462..73620367) extracted from Lotus japonicus Gifu genome v1.2.

TTATTTTTATATAGGTGTATTTACCGTGTAGTTTTTTTTAATAGTGTTTCGTTCTCTTCTCTTTTATTCTACCATTTCTC ACTAAATCAAAGTGTAGCGTTCGAGAAACTTTACATGTTTAGTTCTATTCTACCTTAAAATATATAATAAATACATAACA TATTCCAACCTATGTACCAAATGTTACATTAGTTTCACTAGAACCCTAAAGTTCACCTAGTTTGAGCACACCTTTGTGGT GCCCACTAGGGTGGACCTTTATTATTTTGGTCCACCGGTGCACCAAGGGCATTACAGACATTGCATAAGGATATTTTGGA CTTTATCCTTTTCTCACCTTCTTTCTCCCACTCTCTTCCAGCCCAGTCTGAATCTTCAACTTCGTCTCCTTCCTCTCTCC TTCACCCTTGTGACAATCCACTAGCTAACATCAGATTTTCAATACGTACAAGCTTGACCAATGCTCTGAAAAATATCCAA TGGTGTTTGTGTATATATCTATTTGACATTTGTCCAATTCTAGAAACACCTTGTGAGAAAGGGAAGCTACAAAAATGCTT CACGACCCTTCCACTCTCTTCTTTCTCTTGTGATTTTCCTTTAGATTTTTTGTTGAAGACACAAGAAAGCTTCCATCTTT CTTTCCTCCCTCATCACAATGACTGAATAAGAAGCCAACAAAATAGAAAAATTGAAAAGAAATAAAAAAAAAGGTCAGAT GGTGTAACCTACAGGAACGAAGATAGTGAAATCAAATCAGATAAGCATAACATAGTTGATAAAATTGTGAAATCATGAAG AGGACATGCGACTGTGTGAGAAAGATAGGGTTAGAGAGAGGTACCAGCTCCAGCTATGATGAGGACTGAGGAGCTTCAGA TTTATAGAAGGGGAAAAACCAGATTTTTTAAGACCACTGTTTGAACTTGAAATACCCAACAAATCTAGATCTGCAATCAC CAAAATTGATCACCAAAATCTGCCATGCTCAAGAGAGGAAGAAGGGCTGTGGTTTCTGGAACTCAAGCTTCGATTAAAAA CCCATAAAAGCTTCAACCTGCCTCCATCGCACTCCATGGCAGAACTGGAACGCACTGTAAAGCTGCTAGTTGAGGGGTCA AGGGGTGACGACGGTGAGGTGGCCGGCGGTGGCATGGCCGACGGCGGAGAAGCACCAGAAGCAGGGAAAAGAAAATAGTG AACCAAATGAAAAAAAAGGAGAGGAGGGGTTGTCTAATTTACAATTTTATCCTTTTTGTCATAATTCAATCCCAACCATT AAATTAAAGAATATTCCAAAAATTTCAGATCTAACGGTGTACAATCATGGTGCACCGGAAAAATAAGTGTCCACCCTAGT GGGCACCTACTTTTTGTTTATTCATACCTGATATCTCTCATTCCATCTTTCTTTCTTTTCTATCTATTTTTATTCATACC TGATATCTCTCATATCTCACATTTTAATCAAGTGTTATTTATACCTATTGATTGTATTAATACTAGGATACTATGCTATG CTTTTTCTTGTTTGCAAAACACAAGACAAACCATGAGAATCTAATGTCAAAGGTTGAGCTAGAACCCCAACTCCAACACC CACGTCTCTTCATCCCCAACCTGCTCTCCCTTCACGAATGCAAGGAGTTGGAATTCATCCACAAGAGTAGCAGCACCGTT GGTTACAGACCCAATGTCTTCTCCACCACTCTCTCCCACCTCATCGCCACCAACTCCTCCCACCTCATCGTTCCTTTTAT TCCAATCCGAGGTACCCATCTTAGAATTTCACTTCCTTTCACAACCCATTTTCCCTTATTACATAAAGATTCCATCTTTA ATGTTCTTTTCAGCATTTAGCAATCACTTTGAAATCAATGAAATTGGTGTTTTCCCATGTTTTTGACAGAAAGGTTGAAA GATAAGCTAGAGGAGTTTTTCAAATGTGAGTATGAGCTGTTTGTTGAATTTACGGGTTTAATAAGGTCGGTTGTCTCGCT CCAATGATCCAATGTTTGGCTGGCTTATGTGACTAGTATTTTATGTTTTACCATGTTCTGTTTGATACTATGTTGTATGA TTATGAATCAGCTGGAGTAGAGGAGCTAGCATTGGATGGCATAGTGATGATAACAGGCCTTACCTCAAGCAACGCCACTT TTCAGTGAGTGTTATTCTTGCAACCCTTTTTTAGATATTGATTTTCTGTTGTAATTTGCACTCTTGCTGATAGATAGCTT TTGTCTTCCTTTTGGTAAAACCATGAAAGGTTGTGTGCTATTTAAATACTTATGGGGAGGATTTCAATGGTGGACTCTTT CACTTCCAGGATGGTGAGCCAACATCAATTATGCCTAAGGCCGGAGTGAGTTTTCCCAATTGTGAATTATAATATGTTTG TTTATGAATGAAAGTAGAAATGAGAAGCGTTTCACTGTTTTTATCTCCTTTAAGCTTGAATGTGATTGGTTTTCTAATTT TTTTTTTCAGGACGTTGTGATGTACACAGCTGATCCCCGAAATATTCATTCTGTTGATGAGGTATATTCCAGTCGAGTGC ACTCCTTTCTTTCACGCCTATTTACTTGGTCACATTCATAAGCAGCTTTAGTTTTTCTTAAATTGTAAATTTGGACTCAA TCACTCAAATCTTCATTGCCACCTCCCGAACTCCTGAGCCCAAGAAAAAAAGCATATTTTTTGGAACTTCAAAGCATGAT TCAACTTTTTCTTGTCTCATTAGTCATCTGCTATTAAAAGTAAACCAACAATTCATTTCCATAATGTAATGAATTATACA AAATCAGCAATTACAATCATTAACCATCAAATAATTATGGAGATGAATACGAGTGCAGGTGACTATTCCTGCAAAAAATA ATGGATACAGCAATATTTTAATGATATAATAATGTTCTTCACTGTGAGTGCAGAAAACAAGGACAAACCATAACAAAGTT GTATGTGGGCTGTTGGCTGTCTAACACAACCCTCCTCCTTTTTCTGGATTTGAGACTGCCTATGTAATGCATATAGGCAG AGGTTATCAATATAATACAAGTAGAGAAAAACTCCCATATATTCTATTGATTAAATAAATTTATGATTGATGTGGGCAAC AGTTGTAGATATTGTTTTAGGAGGACTAAATGGATTTAAATCATTCTTTCATGGACCACATGGTAGTTCAATCATCAATA AATATATGGCCATCTTTAACCTTTCTAATGAAGTTATCTTTGACAGATAACTGATGGGGAAAGACTCACACTTGCTTTAT GGTTCAGTCGTGATGGTTCCCATGATGAGGATAAGAAGCTTGTTTCTCTACTTTCACAACACCTATTACATGAGAACATA GCCGATTCGTACCTACCTTTGCCTGCATCCAGTAATATGTACTGGTTTTCTCAGGACCAAGCTTCGAATAGCCGATTCGG TTTTAATATATGTTGGGCTAGACTGCATATTCTTGGATATCACATATATATTTCCCAAGACAGTAGCTGTGAATCTGATA TATCTGAACTAATGGTAAAGCCAGTGCGTTTAGCGAGGGGAAATGAGGTGCTAGACATGGAATTTGTCAATATTTTGCAT GCACTTCAGGTATTTTAAATAATCCTTAGTTATATTTTCAGTTAATATTGAAAGATCAATTGTATAGCAAATGCACATAC TATTCAATCAGTAATACTGGGTCTAACATATTGTTTTCTGTTAATATTGAAAGATCAATTCTTGTAGTAGTAACTCTTTT TGAACCTGAGAATATTGAAGGGGTCTTAAAAAGTTCGGCAGGGCCCTCCAAGTTTCCTTTAGGAGACTTAAAAACAGATA TTACATTTTCTCTGTGAATTGCATTTTTCGGTGTAATAACTGCAGTTAGTACTATTGTTTATGCATAACTGATTACTTGC AATTTACAATCTTGATGGGTTTTGCAAAGATTTCTGCTGCTACTCTGATTCATGTTCTTTTGCTTCACAGGTTGTCCATT TCTATTGTTGGAAAGGATCTAGCTTACAAACCAATGTGTCAAATATAGACTCCAAGATAGTAGAACTATCAGAGGTGCAA AGAGAAAAAATCAGTAGTCTAAATTCTATCCTTTTGAATGATTTAGATTTTGCATCAAGAGATTTTTGCAGTATGCCCTC CCAAGAAAATGCATGCATTTGCTTTGATTGGACAGGCATTGTGAATGCAGTTGCTGCTTGGGAAGATTACACATCGAAAT TAAGCAAACAGATTAATTTACAGTTGCCTTACTGGAGAATGCATGAATGTATATACAATGTACAATTGGATGAGCATTGA GCAATATCCGTGATCAACAATTCCAAGGAAAAGTAACCACTGGAAATTGCACTTGGGTTTAAGAATTGGAAAAGAGTAGA AGTTTGATAGCACGATTCAAGTTTGGGGGACTTTTAAGACAAAGCTTCTTGGGGAGAGGCGAGGATGCAGCTCAAGGATA TCTCAAGTGTGTTATGCATACTAGATGGCAAATACTGTATGCTCATGTTTCTAAAATATATGTAACATGAGTTTGGGTGC AATATTACAGCTACCATAAGCTCATTAATTATGTTCGGATATTTGTTGGCACCAGTGCAAACAGACGTTGGCACTTCGAG ATAAAAAGTGAATGAAACTCTTATGGATAATTAGGTGACTAAACTGGTATCCTAACACAGACTAAAGTCTTTTTTCAAAC GCAAGTTTGCTTTTATTTACAAATGGCTTAAAGGGTCCAAAGGCCCCTGAGATTACAAAGGGAATCAAATCTAGGACCTG AAAAATGTTCGCATCAAATTGAGTCCCTAAGAAATTTTTTTTAATTCAATTAAGGCCAAATGTTGCCACAGCTCAATTTT GTCCTAGTCACTTTTACCACGTGGCTTTTATAATTATTTTTTAATTTAAAAATTATTTTTTTTAATTCCAACTCATTTAT TTAAGTAGAAAAAAATTAAAAACTTAATAAATCCCTAATTTAAATAAAATCCCTTAACTAAATAATTACCTAAATAATAA CCTAATCTAATAATAACAAAAAACATCAAACCCAACAAGAAATTAACAATCCCTTCAACATCAAACAACACAGATCTAGG GTTTCACTAACAATTCACAAATCTTCATCCTCACCCCAACAACTGTTATCTTCTTCCTCAACTCCCAAAAAACCCATTCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCACCCCCACCCACCCAACAAAC TCAAATCTTCATCCTCAACCCCAACAACTGTTATCTTCTTCCTCAACTCCAAAAAAACTCATTCTTCTTCTTCTTCTTCC CCACCCCCACCCACCCACCCAACAAACTCAAATCTTCATCCTCAACCCCAACAACTGTTATCTTCTTCCTCAACTCCAAA AAAAATCATTCTTCTTCTTCTTCCCCACCCTCACCCACCCAACAAACCCAGACAACCAGAACCCCACCACCCTCAATCCA CATGCAAATCCGAATTCAGTCTCACCTCACCAACCTAGATCCAGTCCAGATCGAAGCATATCCGGACAAATTGATGCAAG GAGATGGCAAAGGTGCAACAAGGAGAGCTTGGGTTTGGCAATGGCAGCAAAAAAGGGTTGGGTGTGGTGGTTGGGGTGGG TTTCAGTTTTGCTGATTGCTGGCTAAAGAAGATGAAATTTGGGGTGGGTAGATAGTGGTGGTGCGTGGGTTTGGAGGTGT TGAGGTGGGTTGGGGTCTTGTTTCTGGAATCTGAATTTTTGGTGTGGTTATGGGTTTTCAATGGTGGGGGTTGAAGAGGG GAGGAAGGTTGCAGAGAGTGTTTTGTTTTATTTTTAGATTTAGGTTTTTATTTACATTAGAGATTTTATTAAGTTTTTTA TTTTTTATTTATGCTTTAATATATGAGTTGGATTTAAAAAATTAAGTTTTAGGAAATTTTTCAATTAAAAAAAATTAAAA TGCCACGTGGAAAAGCTGAGTAGGCTAAAATTGAAGCCACTTCAGCATCAGACACACTTTGTCCTTAATTGAATTAAAAA AATTTTCTTAGGGACTCAATTTGATGCGAAAATTTTCCAGGTCCTGGATTTGATTCCCTTTGTAATCTCAGGGGCCTTTG GACCTTTAAGCCTTTACAAATAGTACATTTCTAACTCCAAATTTTCAGCTGGAGTGATATCTATTTGAACTCTATAGTAC ATTTCAAACGCCGGTTATATGCTTGCTTTTAGCTCATTATCTTCAGGCTGCTGTGAAAGTTCTTTGGATATGCTCCACCT ATGCAAAGCATTGCCATACACGTCGTAGAAAACGAAATTTGCACTGGTTTCTGTGATCTGCACGGACATGAATCCCTGTC CATCATGATACAGCTTCATTTCTTCAGGGTCCCATGGCTTGACATCGCCCCTCCATGCCTTTGATCCACCTCCACTTGTT AAGAAGTGAATTCCACTTCATTGTACATGCAAACCAAGGAAGCATGAGTTTCAGAACAGTGATAATGTTCATGCAATGAT GCTACCCATTTACAAGTAAGATATATGCTTACCTCTTTTTGTCAATTATGTGCTCCAAGCAATGGTCATGTCCATTAATG TATAGATCAACATTGTTTGACTGGACCATTATTGAAGAAACTAGTTAGAAATAGTCAAACTTTCATGCAATGACTTCAAC AATAATAACTTAATAAGGAGCTTGGAATTTTAATATGGTCTAAGCTAATTAATTAGTTCAATACTTAATTACACCTTGTG TACATAATAAGTACTAAGGAGGCATTTGATATTAGTTTGCAAGATTGATTCTGTAGTCAAAATCAATCTTGAGAGGAGCT TCCATAAGTAGCTTCTGGGTGTCAAAATTGATTCTGAAAAAAACGAAACTGATCCAAACATGCTATTAGATATACATGTT TGGAATGCCAATATTGCGGCAACATAGTTGTCATTACCAACATGCCATGTATGTTTTGAATCAATTTTTCAATAGTCATT CAAAACCATGAGAAATGTCTTAAACTTGAGTGATATAACGTATCAATAATCAATGTAGAATGACAAGGGACCGAATGCTC TTATTCATGAGAGTTAGATTCATTTACCTTTAAGATGGGAAGAAGTAGCTCATTAAGCTCCTGTGTATTACCATGATGCC CAGCACTTCGGATAGCATGATGACCAACCACTATCTTCCATTTTGCCTTGGATTGTGCCAAAGCTGAATCAACATCCTAC AGAAAGATTTAAGAAGCAATGTGGTGATTTCAAAGTTGCAATTCATTATAAAAAGTTGAATATGTTGTTCTTGAATATTT TGTGAAAATTTGTACACAATATTTCTTCTTTGTCACCAACCTTCAAGAGTCTTGAAATGTAATCTTTGCGAGGAAGTACT CCTTCCCAATCGTAGGTATGCTCTCCAGGGTCTGCGAAGTACTCTTCTACAAATGGATTTGTGTCCACAAAGAAAAATTC CACATTTTCTGTACAATTAATCAAAGAAACACACCCAAAGATTTATATGAAATGTAAATACATATTTCAATTAACTAATT TTGTATTCAAAACATCTCATAATCAACATTTTATTTAGAGACATTATAGATTAAATACAACAAAAAATGCATAAAAAATT TAACAGGAATTATACCTCCATCAAGGATAAAAGATCTCAGGCAAACCCATCTGTTATCTTTTTGTCTTAGAGTGGGGCTT AATTGTGCCTCAGCATCACCTCTGTAGTCATGGTTACCCAAAACTGCCAAAGTAAAAGGGGAAATGATTAATGTTTTAAC TAGCAAATTAATTTATAAAAATTTCATATAATTAATTAATCGTCTTTTAAGCATAATGAAATTTTATTAACTTACCACTA TACCATCTCTTTTGCAGACTTGGGGCAGTGTAGATGTTGACAAATGACTCATAGAATGCTGGATCATCAACTCCTTTTAG GCCATCTTCGTAAAAATTATCACCGGTTGAGATCACAAAATCTATATTTAGCTTCTCCCCCACAATTCCCATCTAAAAAA TAAACAACAAAAAAAAGTTACTCACTTAAATCCGACATTTCTATTTGAGCTAGAATAACTTCATATTCGTTACACTTGAT AGTACTAATAGTGAGATTGATAAAGAAAAAAAATATTTAAAAAAAAAATACTTTAGCAATAACTAGTGTAATTAGTTTTT TTTTCATCATCATTTAATTGTATTTTGTTTTATTATTGAAAATATTTCTCACATTATACAATTATCACTAAAACTGATCA TAATTTAGCTTTTAAATAATATGACAATATTTTATTAAATTACTATGATTTTAAATTGACAATAATACAATATACAATGA TGTTTTTTGAACAGTTAATTACATAATTAATTACACAAGTGAGATTAAGTGGCTAGATGGAAACAATTTTGTGTTGTATC ACATTGAAAAAGACCTATGTGGGATATGCTTATATCTACACCCTTATATCATTCCAAGTGATTGACATGTGTATTTCACT ATAACTAGCTTTATTATGTTCATTTGGATTTTGGAATATGCGTGGGAATATATAGATGCTCCAAAAAATGAAAGTAGGAT GGAATAAGTAATAAGGTGCTTGGCTCTCTATGGCTATGCCGTGCATAGGGGTGTACAAGATCCGGCCATACCCGCCAATC CGTCCCGGCCCAAGCCTTTAGGGCCGGGTTGAACCCGGCCCGATCATTAAAAGAGACCGGGTTCGGGTTTATCTTTGAGT TACCCGACTTCGTGTCGGGTCGGGTTCGGGTTGACACTCGGGTCACCCGACCCGTCCCACATATATATTTTATAAAATTT AATTTGTTATAATGATTCAAATGTGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0357500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTATGCTTTTTCTTGTTTGCAAAACACAAGACAAACCATGAGAATCTAATGTCAAAGGTTGAGCTAGAACCCCAACT CCAACACCCACGTCTCTTCATCCCCAACCTGCTCTCCCTTCACGAATGCAAGGAGTTGGAATTCATCCACAAGAGTAGCA GCACCGTTGGTTACAGACCCAATGTCTTCTCCACCACTCTCTCCCACCTCATCGCCACCAACTCCTCCCACCTCATCGTT CCTTTTATTCCAATCCGAGAAAGGTTGAAAGATAAGCTAGAGGAGTTTTTCAAATGTGAGTATGAGCTGTTTGTTGAATT TACGGGTTTAATAAGCTGGAGTAGAGGAGCTAGCATTGGATGGCATAGTGATGATAACAGGCCTTACCTCAAGCAACGCC ACTTTTCAGTTGTGTGCTATTTAAATACTTATGGGGAGGATTTCAATGGTGGACTCTTTCACTTCCAGGATGGTGAGCCA ACATCAATTATGCCTAAGGCCGGAGACGTTGTGATGTACACAGCTGATCCCCGAAATATTCATTCTGTTGATGAGATAAC TGATGGGGAAAGACTCACACTTGCTTTATGGTTCAGTCGTGATGGTTCCCATGATGAGGATAAGAAGCTTGTTTCTCTAC TTTCACAACACCTATTACATGAGAACATAGCCGATTCGTACCTACCTTTGCCTGCATCCAGTAATATGTACTGGTTTTCT CAGGACCAAGCTTCGAATAGCCGATTCGGTTTTAATATATGTTGGGCTAGACTGCATATTCTTGGATATCACATATATAT TTCCCAAGACAGTAGCTGTGAATCTGATATATCTGAACTAATGGTAAAGCCAGTGCGTTTAGCGAGGGGAAATGAGGTGC TAGACATGGAATTTGTCAATATTTTGCATGCACTTCAGGTTGTCCATTTCTATTGTTGGAAAGGATCTAGCTTACAAACC AATGTGTCAAATATAGACTCCAAGATAGTAGAACTATCAGAGGTGCAAAGAGAAAAAATCAGTAGTCTAAATTCTATCCT TTTGAATGATTTAGATTTTGCATCAAGAGATTTTTGCAGTATGCCCTCCCAAGAAAATGCATGCATTTGCTTTGATTGGA CAGGCATTGTGAATGCAGTTGCTGCTTGGGAAGATTACACATCGAAATTAAGCAAACAGATTAATTTACAGTTGCCTTAC TGGAGAATGCATGAATGTATATACAATGTACAATTGGATGAGCATTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0357500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLCFFLFAKHKTNHENLMSKVELEPQLQHPRLFIPNLLSLHECKELEFIHKSSSTVGYRPNVFSTTLSHLIATNSSHLIV PFIPIRERLKDKLEEFFKCEYELFVEFTGLISWSRGASIGWHSDDNRPYLKQRHFSVVCYLNTYGEDFNGGLFHFQDGEP TSIMPKAGDVVMYTADPRNIHSVDEITDGERLTLALWFSRDGSHDEDKKLVSLLSQHLLHENIADSYLPLPASSNMYWFS QDQASNSRFGFNICWARLHILGYHIYISQDSSCESDISELMVKPVRLARGNEVLDMEFVNILHALQVVHFYCWKGSSLQT NVSNIDSKIVELSEVQREKISSLNSILLNDLDFASRDFCSMPSQENACICFDWTGIVNAVAAWEDYTSKLSKQINLQLPY WRMHECIYNVQLDEH

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:2.60.120.620 View details on G3DSA:2.60.120.620 Search for proteins/transripts with this domain View external data on G3DSA:2.60.120.620	9	199	191	1.7E-18	–
PANTHER	PTHR14049:SF9 View details on PTHR14049:SF9 Search for proteins/transripts with this domain View external data on PTHR14049:SF9	24	414	391	4.9E-153	–
PANTHER	PTHR14049 View details on PTHR14049 Search for proteins/transripts with this domain View external data on PTHR14049	24	414	391	4.9E-153	IPR039575 Show description in modal box View details on IPR039575 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00702 View details on SM00702 Search for proteins/transripts with this domain View external data on SM00702	29	199	171	0.0025	IPR006620 Show description in modal box View details on IPR006620 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51471 View details on PS51471 Search for proteins/transripts with this domain View external data on PS51471	95	200	106	8.972	IPR005123 Show description in modal box View details on IPR005123 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13640 View details on PF13640 Search for proteins/transripts with this domain View external data on PF13640	114	198	85	3.1E-12	IPR005123 Show description in modal box View details on IPR005123 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005506 View details of GO:0005506 AmiGO InterPro QuickGO	Molecular function	Iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.	Subterm of View details of GO:0046914
GO:0016491 View details of GO:0016491 AmiGO InterPro QuickGO	Molecular function	Oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.	Subterm of View details of GO:0003824
GO:0016705 View details of GO:0016705 AmiGO InterPro QuickGO	Molecular function	Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.	Subterm of View details of GO:0016491
GO:0031418 View details of GO:0031418 AmiGO InterPro QuickGO	Molecular function	L-ascorbic acid binding	Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species.	Subterm of View details of GO:0019842 View details of GO:0031406 View details of GO:0048029 View details of GO:0050662
GO:0032963 View details of GO:0032963 AmiGO InterPro QuickGO	Biological process	Collagen metabolic process	The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).	Subterm of View details of GO:0008152
GO:0055114 View details of GO:0055114 AmiGO InterPro QuickGO	Biological process	Oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.	Subterm of View details of GO:0008152

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0357500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi4g1v0357500.1