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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0357500 |
| Transcript ID | LotjaGi4g1v0357500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prolyl 3-hydroxylase 1; TAIR: AT1G68080.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q6JHU8|P3H1_CHICK Prolyl 3-hydroxylase 1; TrEMBL-Plants: tr|I1KRR4|I1KRR4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73612822..73618977) extracted from Lotus japonicus Gifu genome v1.2.
ATATCTCTCATTCCATCTTTCTTTCTTTTCTATCTATTTTTATTCATACCTGATATCTCTCATATCTCACATTTTAATCA AGTGTTATTTATACCTATTGATTGTATTAATACTAGGATACTATGCTATGCTTTTTCTTGTTTGCAAAACACAAGACAAA CCATGAGAATCTAATGTCAAAGGTTGAGCTAGAACCCCAACTCCAACACCCACGTCTCTTCATCCCCAACCTGCTCTCCC TTCACGAATGCAAGGAGTTGGAATTCATCCACAAGAGTAGCAGCACCGTTGGTTACAGACCCAATGTCTTCTCCACCACT CTCTCCCACCTCATCGCCACCAACTCCTCCCACCTCATCGTTCCTTTTATTCCAATCCGAGGTACCCATCTTAGAATTTC ACTTCCTTTCACAACCCATTTTCCCTTATTACATAAAGATTCCATCTTTAATGTTCTTTTCAGCATTTAGCAATCACTTT GAAATCAATGAAATTGGTGTTTTCCCATGTTTTTGACAGAAAGGTTGAAAGATAAGCTAGAGGAGTTTTTCAAATGTGAG TATGAGCTGTTTGTTGAATTTACGGGTTTAATAAGGTCGGTTGTCTCGCTCCAATGATCCAATGTTTGGCTGGCTTATGT GACTAGTATTTTATGTTTTACCATGTTCTGTTTGATACTATGTTGTATGATTATGAATCAGCTGGAGTAGAGGAGCTAGC ATTGGATGGCATAGTGATGATAACAGGCCTTACCTCAAGCAACGCCACTTTTCAGTGAGTGTTATTCTTGCAACCCTTTT TTAGATATTGATTTTCTGTTGTAATTTGCACTCTTGCTGATAGATAGCTTTTGTCTTCCTTTTGGTAAAACCATGAAAGG TTGTGTGCTATTTAAATACTTATGGGGAGGATTTCAATGGTGGACTCTTTCACTTCCAGGATGGTGAGCCAACATCAATT ATGCCTAAGGCCGGAGTGAGTTTTCCCAATTGTGAATTATAATATGTTTGTTTATGAATGAAAGTAGAAATGAGAAGCGT TTCACTGTTTTTATCTCCTTTAAGCTTGAATGTGATTGGTTTTCTAATTTTTTTTTTCAGGACGTTGTGATGTACACAGC TGATCCCCGAAATATTCATTCTGTTGATGAGGTATATTCCAGTCGAGTGCACTCCTTTCTTTCACGCCTATTTACTTGGT CACATTCATAAGCAGCTTTAGTTTTTCTTAAATTGTAAATTTGGACTCAATCACTCAAATCTTCATTGCCACCTCCCGAA CTCCTGAGCCCAAGAAAAAAAGCATATTTTTTGGAACTTCAAAGCATGATTCAACTTTTTCTTGTCTCATTAGTCATCTG CTATTAAAAGTAAACCAACAATTCATTTCCATAATGTAATGAATTATACAAAATCAGCAATTACAATCATTAACCATCAA ATAATTATGGAGATGAATACGAGTGCAGGTGACTATTCCTGCAAAAAATAATGGATACAGCAATATTTTAATGATATAAT AATGTTCTTCACTGTGAGTGCAGAAAACAAGGACAAACCATAACAAAGTTGTATGTGGGCTGTTGGCTGTCTAACACAAC CCTCCTCCTTTTTCTGGATTTGAGACTGCCTATGTAATGCATATAGGCAGAGGTTATCAATATAATACAAGTAGAGAAAA ACTCCCATATATTCTATTGATTAAATAAATTTATGATTGATGTGGGCAACAGTTGTAGATATTGTTTTAGGAGGACTAAA TGGATTTAAATCATTCTTTCATGGACCACATGGTAGTTCAATCATCAATAAATATATGGCCATCTTTAACCTTTCTAATG AAGTTATCTTTGACAGATAACTGATGGGGAAAGACTCACACTTGCTTTATGGTTCAGTCGTGATGGTTCCCATGATGAGG ATAAGAAGCTTGTTTCTCTACTTTCACAACACCTATTACATGAGAACATAGCCGATTCGTACCTACCTTTGCCTGCATCC AGTAATATGTACTGGTTTTCTCAGGACCAAGCTTCGAATAGCCGATTCGGTTTTAATATATGTTGGGCTAGACTGCATAT TCTTGGATATCACATATATATTTCCCAAGACAGTAGCTGTGAATCTGATATATCTGAACTAATGGTAAAGCCAGTGCGTT TAGCGAGGGGAAATGAGGTGCTAGACATGGAATTTGTCAATATTTTGCATGCACTTCAGGTATTTTAAATAATCCTTAGT TATATTTTCAGTTAATATTGAAAGATCAATTGTATAGCAAATGCACATACTATTCAATCAGTAATACTGGGTCTAACATA TTGTTTTCTGTTAATATTGAAAGATCAATTCTTGTAGTAGTAACTCTTTTTGAACCTGAGAATATTGAAGGGGTCTTAAA AAGTTCGGCAGGGCCCTCCAAGTTTCCTTTAGGAGACTTAAAAACAGATATTACATTTTCTCTGTGAATTGCATTTTTCG GTGTAATAACTGCAGTTAGTACTATTGTTTATGCATAACTGATTACTTGCAATTTACAATCTTGATGGGTTTTGCAAAGA TTTCTGCTGCTACTCTGATTCATGTTCTTTTGCTTCACAGGTTGTCCATTTCTATTGTTGGAAAGGATCTAGCTTACAAA CCAATGTGTCAAATATAGACTCCAAGATAGTAGAACTATCAGAGGTGCAAAGAGAAAAAATCAGTAGTCTAAATTCTATC CTTTTGAATGATTTAGATTTTGCATCAAGAGATTTTTGCAGTATGCCCTCCCAAGAAAATGCATGCATTTGCTTTGATTG GACAGGCATTGTGAATGCAGTTGCTGCTTGGGAAGATTACACATCGAAATTAAGCAAACAGATTAATTTACAGTTGCCTT ACTGGAGAATGCATGAATGTATATACAATGTACAATTGGATGAGCATTGAGCAATATCCGTGATCAACAATTCCAAGGAA AAGTAACCACTGGAAATTGCACTTGGGTTTAAGAATTGGAAAAGAGTAGAAGTTTGATAGCACGATTCAAGTTTGGGGGA CTTTTAAGACAAAGCTTCTTGGGGAGAGGCGAGGATGCAGCTCAAGGATATCTCAAGTGTGTTATGCATACTAGATGGCA AATACTGTATGCTCATGTTTCTAAAATATATGTAACATGAGTTTGGGTGCAATATTACAGCTACCATAAGCTCATTAATT ATGTTCGGATATTTGTTGGCACCAGTGCAAACAGACGTTGGCACTTCGAGATAAAAAGTGAATGAAACTCTTATGGATAA TTAGGTGACTAAACTGGTATCCTAACACAGACTAAAGTCTTTTTTCAAACGCAAGTTTGCTTTTATTTACAAATGGCTTA AAGGGTCCAAAGGCCCCTGAGATTACAAAGGGAATCAAATCTAGGACCTGAAAAATGTTCGCATCAAATTGAGTCCCTAA GAAATTTTTTTTAATTCAATTAAGGCCAAATGTTGCCACAGCTCAATTTTGTCCTAGTCACTTTTACCACGTGGCTTTTA TAATTATTTTTTAATTTAAAAATTATTTTTTTTAATTCCAACTCATTTATTTAAGTAGAAAAAAATTAAAAACTTAATAA ATCCCTAATTTAAATAAAATCCCTTAACTAAATAATTACCTAAATAATAACCTAATCTAATAATAACAAAAAACATCAAA CCCAACAAGAAATTAACAATCCCTTCAACATCAAACAACACAGATCTAGGGTTTCACTAACAATTCACAAATCTTCATCC TCACCCCAACAACTGTTATCTTCTTCCTCAACTCCCAAAAAACCCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCCCCACCCCCACCCACCCAACAAACTCAAATCTTCATCCTCAACCCCAACAACTG TTATCTTCTTCCTCAACTCCAAAAAAACTCATTCTTCTTCTTCTTCTTCCCCACCCCCACCCACCCACCCAACAAACTCA AATCTTCATCCTCAACCCCAACAACTGTTATCTTCTTCCTCAACTCCAAAAAAAATCATTCTTCTTCTTCTTCCCCACCC TCACCCACCCAACAAACCCAGACAACCAGAACCCCACCACCCTCAATCCACATGCAAATCCGAATTCAGTCTCACCTCAC CAACCTAGATCCAGTCCAGATCGAAGCATATCCGGACAAATTGATGCAAGGAGATGGCAAAGGTGCAACAAGGAGAGCTT GGGTTTGGCAATGGCAGCAAAAAAGGGTTGGGTGTGGTGGTTGGGGTGGGTTTCAGTTTTGCTGATTGCTGGCTAAAGAA GATGAAATTTGGGGTGGGTAGATAGTGGTGGTGCGTGGGTTTGGAGGTGTTGAGGTGGGTTGGGGTCTTGTTTCTGGAAT CTGAATTTTTGGTGTGGTTATGGGTTTTCAATGGTGGGGGTTGAAGAGGGGAGGAAGGTTGCAGAGAGTGTTTTGTTTTA TTTTTAGATTTAGGTTTTTATTTACATTAGAGATTTTATTAAGTTTTTTATTTTTTATTTATGCTTTAATATATGAGTTG GATTTAAAAAATTAAGTTTTAGGAAATTTTTCAATTAAAAAAAATTAAAATGCCACGTGGAAAAGCTGAGTAGGCTAAAA TTGAAGCCACTTCAGCATCAGACACACTTTGTCCTTAATTGAATTAAAAAAATTTTCTTAGGGACTCAATTTGATGCGAA AATTTTCCAGGTCCTGGATTTGATTCCCTTTGTAATCTCAGGGGCCTTTGGACCTTTAAGCCTTTACAAATAGTACATTT CTAACTCCAAATTTTCAGCTGGAGTGATATCTATTTGAACTCTATAGTACATTTCAAACGCCGGTTATATGCTTGCTTTT AGCTCATTATCTTCAGGCTGCTGTGAAAGTTCTTTGGATATGCTCCACCTATGCAAAGCATTGCCATACACGTCGTAGAA AACGAAATTTGCACTGGTTTCTGTGATCTGCACGGACATGAATCCCTGTCCATCATGATACAGCTTCATTTCTTCAGGGT CCCATGGCTTGACATCGCCCCTCCATGCCTTTGATCCACCTCCACTTGTTAAGAAGTGAATTCCACTTCATTGTACATGC AAACCAAGGAAGCATGAGTTTCAGAACAGTGATAATGTTCATGCAATGATGCTACCCATTTACAAGTAAGATATATGCTT ACCTCTTTTTGTCAATTATGTGCTCCAAGCAATGGTCATGTCCATTAATGTATAGATCAACATTGTTTGACTGGACCATT ATTGAAGAAACTAGTTAGAAATAGTCAAACTTTCATGCAATGACTTCAACAATAATAACTTAATAAGGAGCTTGGAATTT TAATATGGTCTAAGCTAATTAATTAGTTCAATACTTAATTACACCTTGTGTACATAATAAGTACTAAGGAGGCATTTGAT ATTAGTTTGCAAGATTGATTCTGTAGTCAAAATCAATCTTGAGAGGAGCTTCCATAAGTAGCTTCTGGGTGTCAAAATTG ATTCTGAAAAAAACGAAACTGATCCAAACATGCTATTAGATATACATGTTTGGAATGCCAATATTGCGGCAACATAGTTG TCATTACCAACATGCCATGTATGTTTTGAATCAATTTTTCAATAGTCATTCAAAACCATGAGAAATGTCTTAAACTTGAG TGATATAACGTATCAATAATCAATGTAGAATGACAAGGGACCGAATGCTCTTATTCATGAGAGTTAGATTCATTTACCTT TAAGATGGGAAGAAGTAGCTCATTAAGCTCCTGTGTATTACCATGATGCCCAGCACTTCGGATAGCATGATGACCAACCA CTATCTTCCATTTTGCCTTGGATTGTGCCAAAGCTGAATCAACATCCTACAGAAAGATTTAAGAAGCAATGTGGTGATTT CAAAGTTGCAATTCATTATAAAAAGTTGAATATGTTGTTCTTGAATATTTTGTGAAAATTTGTACACAATATTTCTTCTT TGTCACCAACCTTCAAGAGTCTTGAAATGTAATCTTTGCGAGGAAGTACTCCTTCCCAATCGTAGGTATGCTCTCCAGGG TCTGCGAAGTACTCTTCTACAAATGGATTTGTGTCCACAAAGAAAAATTCCACATTTTCTGTACAATTAATCAAAG
CDS sequence (LotjaGi4g1v0357500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATGCTTTTTCTTGTTTGCAAAACACAAGACAAACCATGAGAATCTAATGTCAAAGGTTGAGCTAGAACCCCAACT CCAACACCCACGTCTCTTCATCCCCAACCTGCTCTCCCTTCACGAATGCAAGGAGTTGGAATTCATCCACAAGAGTAGCA GCACCGTTGGTTACAGACCCAATGTCTTCTCCACCACTCTCTCCCACCTCATCGCCACCAACTCCTCCCACCTCATCGTT CCTTTTATTCCAATCCGAGAAAGGTTGAAAGATAAGCTAGAGGAGTTTTTCAAATGTGAGTATGAGCTGTTTGTTGAATT TACGGGTTTAATAAGCTGGAGTAGAGGAGCTAGCATTGGATGGCATAGTGATGATAACAGGCCTTACCTCAAGCAACGCC ACTTTTCAGTTGTGTGCTATTTAAATACTTATGGGGAGGATTTCAATGGTGGACTCTTTCACTTCCAGGATGGTGAGCCA ACATCAATTATGCCTAAGGCCGGAGACGTTGTGATGTACACAGCTGATCCCCGAAATATTCATTCTGTTGATGAGATAAC TGATGGGGAAAGACTCACACTTGCTTTATGGTTCAGTCGTGATGGTTCCCATGATGAGGATAAGAAGCTTGTTTCTCTAC TTTCACAACACCTATTACATGAGAACATAGCCGATTCGTACCTACCTTTGCCTGCATCCAGTAATATGTACTGGTTTTCT CAGGACCAAGCTTCGAATAGCCGATTCGGTTTTAATATATGTTGGGCTAGACTGCATATTCTTGGATATCACATATATAT TTCCCAAGACAGTAGCTGTGAATCTGATATATCTGAACTAATGGTAAAGCCAGTGCGTTTAGCGAGGGGAAATGAGGTGC TAGACATGGAATTTGTCAATATTTTGCATGCACTTCAGGTTGTCCATTTCTATTGTTGGAAAGGATCTAGCTTACAAACC AATGTGTCAAATATAGACTCCAAGATAGTAGAACTATCAGAGGTGCAAAGAGAAAAAATCAGTAGTCTAAATTCTATCCT TTTGAATGATTTAGATTTTGCATCAAGAGATTTTTGCAGTATGCCCTCCCAAGAAAATGCATGCATTTGCTTTGATTGGA CAGGCATTGTGAATGCAGTTGCTGCTTGGGAAGATTACACATCGAAATTAAGCAAACAGATTAATTTACAGTTGCCTTAC TGGAGAATGCATGAATGTATATACAATGTACAATTGGATGAGCATTGA
Protein sequence (LotjaGi4g1v0357500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCFFLFAKHKTNHENLMSKVELEPQLQHPRLFIPNLLSLHECKELEFIHKSSSTVGYRPNVFSTTLSHLIATNSSHLIV PFIPIRERLKDKLEEFFKCEYELFVEFTGLISWSRGASIGWHSDDNRPYLKQRHFSVVCYLNTYGEDFNGGLFHFQDGEP TSIMPKAGDVVMYTADPRNIHSVDEITDGERLTLALWFSRDGSHDEDKKLVSLLSQHLLHENIADSYLPLPASSNMYWFS QDQASNSRFGFNICWARLHILGYHIYISQDSSCESDISELMVKPVRLARGNEVLDMEFVNILHALQVVHFYCWKGSSLQT NVSNIDSKIVELSEVQREKISSLNSILLNDLDFASRDFCSMPSQENACICFDWTGIVNAVAAWEDYTSKLSKQINLQLPY WRMHECIYNVQLDEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 199 | 191 | 1.7E-18 | – | |
| PANTHER | 24 | 414 | 391 | 4.9E-153 | – | |
| PANTHER | 24 | 414 | 391 | 4.9E-153 | ||
| SMART | 29 | 199 | 171 | 0.0025 | ||
| ProSiteProfiles | 95 | 200 | 106 | 8.972 | ||
| Pfam | 114 | 198 | 85 | 3.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. | ||
| Molecular function | L-ascorbic acid binding | Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. | ||
| Biological process | Collagen metabolic process | The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%). | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0357500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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