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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0362600 |
Transcript ID | LotjaGi4g1v0362600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING finger protein; TAIR: AT1G24440.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q14527|HLTF_HUMAN Helicase-like transcription factor; TrEMBL-Plants: tr|A0A151U8S4|A0A151U8S4_CAJCA RING finger protein 141; Found in the gene: LotjaGi4g1v0362600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74149456..74150929) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAATGATGCCGTACCAGCTTTACCGGTTGCCTTACCATGATTCCCTCAAATTGCTTGAGGCTGATATACAACACGC CAATGCTTTGTCAGTTTTTTTTTTTTTCGTTCTGCCCCACTTTAATTTTTGTTTTCTTTCTTCATTTATGTGTTTTGGTT TGTTTGTATATGATGAAATTTGAAGAAGATTGAAGTAAAAAGAGTTTTTTTTTTAGAGAATCAGTTTTGACTTGATTAAT TGCTTTTAGGACTTGAAATGGACCATCATAGTTGTTGCTTGATAAGTATTTGCTTGCTGCTAATTGAGATTGTTATCTTT AATTTGATTTCTAGTGGTCAATAAAGTTGGAATTTTTTTTTAGTTATACAAGTTTGATGAATTTGTAACTTATATACTGG AATTTGGTGGTTAATTTGATGGTTATATTCTTTGTTTTGAATTTGGGGGTTAATTTGATGGTTGAATTTCAATTGTGGGT CTGCTGTGTGTTCTGTAGGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGAGTGTTCTTCAAATGAAATTGGTTTATAGTC ACTTGGCTCCTCTCTTTCTATTGTTCTTAGAGTGGATGGATTGTTCTTGTGCATACTTTCTTCACAGATATCTCAGCCTC TTCCACATACTTATTTACAAGGTGAGTTCCTGGATGAATGGAGGTCCTCCACAATAACACTTCATTCGAAATTTAATTCA ATTCACACTAAGAGTGAGATAGGATGAGAAGAAAGAGAAATGAGTGATATGATAAATGATGTCATAGGAAATGCAGTGAG AGATAAGAAGAAAAACTGAGTTGAAATGAGATGGAAGGGAAAGTCTGTATGAATGAATCATTTACTCAGGTCCTCCATAA TTCTAGTTCTTGTAACTGTTCACTGAAGAAATTTGGTTTTGTCCTGTTCTATTTCTGTTCTCTTATGGGTTTGCTAATGC TTTTTTTTGTAATTGAGTGTTGTTCTTTTGTTGTTGTTGATGTTGTTTTTGCTGTCCTGTTTTTTCAAAGGTACATAATG ATGGTAGATCAAGTATAACTTCTCATGGAAGAAAGGCAACCATTCAGGACTTTTATGGTGGGTGTGAACCTTTGACTTTC AAAAAGCACATTTTATTTAGTTAAAAAAAAGAAAAGAAAAGTATACTCTTTGTTTTGTCTGCTCTGACTAATTTCTCACT GTTTTTAAATGTTAAAAATGAAACCTTAGCCGTTATACTGCCATCCCTCCAGCGGCTTCATGGCAGCTTGGAGAAGTTGG AGATTTGCATGAAAGGGTCCTCTACCATGGAGTTCTCAAGTTATGGCAGGAAGATGATTGAAGGAAATGGGAAATTAATC AATGTCGATTTGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCA TGCTATGTGTATCAAATGCTACCGCAAGTGGTAA
CDS sequence (LotjaGi4g1v0362600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGATGCCGTACCAGCTTTACCGGTTGCCTTACCATGATTCCCTCAAATTGCTTGAGGCTGATATACAACACGC CAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGAGTGTTCTTCAAATGAAATTGGTTTATAGTCACTTGGCTC CTCTCTTTCTATTGTTCTTAGAGTGGATGGATTGTTCTTGTGCATACTTTCTTCACAGATATCTCAGCCTCTTCCACATA CTTATTTACAAGGTACATAATGATGGTAGATCAAGTATAACTTCTCATGGAAGAAAGGCAACCATTCAGGACTTTTATGC CGTTATACTGCCATCCCTCCAGCGGCTTCATGGCAGCTTGGAGAAGTTGGAGATTTGCATGAAAGGGTCCTCTACCATGG AGTTCTCAAGTTATGGCAGGAAGATGATTGAAGGAAATGGGAAATTAATCAATGTCGATTTGGAAAGAGAAGATGAATGT GGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCTATGTGTATCAAATGCTACCGCAAGTG GTAA
Protein sequence (LotjaGi4g1v0362600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMMPYQLYRLPYHDSLKLLEADIQHANALAAAIPRAKGGSVLQMKLVYSHLAPLFLLFLEWMDCSCAYFLHRYLSLFHI LIYKVHNDGRSSITSHGRKATIQDFYAVILPSLQRLHGSLEKLEICMKGSSTMEFSSYGRKMIEGNGKLINVDLEREDEC GICLEPCTKMVLPNCCHAMCIKCYRKW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 51 | 51 | - | – | |
PANTHER | 8 | 187 | 180 | 9.4E-86 | – | |
PANTHER | 8 | 187 | 180 | 9.4E-86 | – | |
Phobius | 52 | 71 | 20 | - | – | |
Phobius | 72 | 187 | 116 | - | – | |
Gene3D | 131 | 187 | 57 | 1.4E-6 | ||
SUPERFAMILY | 151 | 187 | 37 | 6.31E-7 | – | |
ProSitePatterns | 175 | 184 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0362600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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