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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017907
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 245 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 6.006s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0038179.1
n.a. MTD2 [Medicago truncatula] gi|9294812|gb|AAF86688.1| chr0 12328670 12331133 -
2 domain predictions
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Lj0g3v0060169.1
n.a. PHD and RING finger domain-containing protein [Medicago truncatula] gi|357511785|ref|XP_003626181.1| chr0 20004399 20008108 -
2 domain predictions
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Lj0g3v0072849.1
n.a. PREDICTED: F-box protein At3g54460-like [Glycine max] gi|356541572|ref|XP_003539248.1| chr0 27153265 27160791 +
2 domain predictions
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Lj0g3v0073229.1
n.a. Ring 1b [Theobroma cacao] gi|508707572|gb|EOX99468.1| chr0 27417683 27425098 -
2 domain predictions
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Lj0g3v0097549.1
n.a. IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| chr0 41257870 41261433 +
2 domain predictions
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Lj0g3v0107819.1
n.a. E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1| chr0 46491473 46503911 -
2 domain predictions
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Lj0g3v0114209.1
n.a. PREDICTED: E3 ubiquitin-protein ligase COP1-like [Glycine max] gi|356554527|ref|XP_003545597.1| chr0 50026700 50038584 +
2 domain predictions
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Lj0g3v0217549.1
n.a. PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase KEG-like [Cicer arietinum] gi|502124821|ref|XP_004498687.1| chr0 110741548 110742288 -
2 domain predictions
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Lj0g3v0220209.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356544236|ref|XP_003540560.1| chr0 112677710 112678148 +
2 domain predictions
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Lj0g3v0224379.1
n.a. Zinc ion binding [Theobroma cacao] gi|508727541|gb|EOY19438.1| chr0 115897934 115903840 +
2 domain predictions
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Lj0g3v0236929.1
n.a. PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max] gi|356559851|ref|XP_003548210.1| chr0 122797373 122804327 +
2 domain predictions
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Lj0g3v0239559.2
n.a. PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1| chr0 124301676 124303575 -
2 domain predictions
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Lj0g3v0239559.3
n.a. PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1| chr0 124301676 124303575 -
2 domain predictions
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Lj0g3v0250279.1
n.a. RING/U-box superfamily protein isoform 2 [Theobroma cacao] gi|508785653|gb|EOY32909.1| chr0 129752917 129757127 +
2 domain predictions
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Lj0g3v0252719.1
n.a. Os08g0414200 [Oryza sativa Japonica Group] gi|115476410|ref|NP_001061801.1| chr0 131128730 131134633 +
2 domain predictions
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Lj0g3v0263889.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max] gi|356549928|ref|XP_003543342.1| chr0 136801202 136804748 -
2 domain predictions
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Lj0g3v0271549.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 140673021 140679894 -
2 domain predictions
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Lj0g3v0282239.1
n.a. Helicase protein with RING/U-box domain [Theobroma cacao] gi|508714076|gb|EOY05973.1| chr0 146329668 146335635 +
2 domain predictions
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Lj0g3v0282959.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RMA3-like isoform X1 [Cicer arietinum] gi|502168188|ref|XP_004514340.1| chr0 146635783 146638578 +
2 domain predictions
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Lj0g3v0288699.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr0 149998979 149999820 +
2 domain predictions
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Lj0g3v0288719.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Cicer arietinum] gi|502086230|ref|XP_004488151.1| chr0 150008495 150011527 +
2 domain predictions
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Lj0g3v0294399.1
n.a. PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Cicer arietinum] gi|502110153|ref|XP_004493812.1| chr0 152981379 152986817 -
2 domain predictions
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Lj0g3v0308069.1
n.a. PREDICTED: probable E3 ubiquitin-protein ligase ARI3-like [Glycine max] gi|356522436|ref|XP_003529852.1| chr0 160833880 160835082 +
2 domain predictions
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Lj0g3v0312049.1
n.a. PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Glycine max] gi|356508525|ref|XP_003523006.1| chr0 162880309 162891154 +
2 domain predictions
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Lj0g3v0320939.1
n.a. PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1-like isoform X2 [Cicer arietinum] gi|502103046|ref|XP_004492186.1| chr0 167511360 167520707 +
2 domain predictions
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Lj0g3v0348699.1
n.a. RING finger protein [Medicago truncatula] gi|357463141|ref|XP_003601852.1| chr0 182996624 182998702 +
2 domain predictions
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Lj0g3v0348699.2
n.a. RING finger protein [Medicago truncatula] gi|357463141|ref|XP_003601852.1| chr0 182997421 182998702 +
2 domain predictions
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Lj0g3v0359259.1
n.a. RING finger protein [Medicago truncatula] gi|357488913|ref|XP_003614744.1| chr0 189136386 189137828 -
2 domain predictions
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Lj1g3v0052380.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 1-like [Glycine max] gi|356506028|ref|XP_003521790.1| chr1 464753 466384 -
2 domain predictions
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Lj1g3v0270280.1
n.a. DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1| chr1 3240152 3248562 -
2 domain predictions
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Lj1g3v0874380.1
n.a. PREDICTED: LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470113007|ref|XP_004292719.1| chr1 11233272 11237661 +
2 domain predictions
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Lj1g3v2313180.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF8-like isoform X1 [Cicer arietinum] gi|502147407|ref|XP_004506771.1| chr1 27274122 27276556 -
2 domain predictions
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Lj1g3v2546300.1
n.a. PREDICTED: RING finger and transmembrane domain-containing protein 2-like isoform X1 [Cicer arietinum] gi|502104614|ref|XP_004492595.1| chr1 29341370 29346876 +
2 domain predictions
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Lj1g3v2996620.2
n.a. CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1| chr1 34108391 34111448 +
2 domain predictions
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Lj1g3v3529490.1
n.a. PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Glycine max] gi|356566399|ref|XP_003551419.1| chr1 40480769 40488273 -
2 domain predictions
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Lj1g3v3754810.1
n.a. PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] gi|356574020|ref|XP_003555151.1| chr1 43098162 43100141 +
2 domain predictions
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Lj1g3v3904350.1
n.a. PREDICTED: RING finger protein 10-like [Glycine max] gi|356571636|ref|XP_003553982.1| chr1 45441063 45448151 -
2 domain predictions
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Lj1g3v4104770.1
n.a. DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1| chr1 48682768 48686818 -
2 domain predictions
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Lj1g3v4454670.1
n.a. PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max] gi|356503576|ref|XP_003520583.1| chr1 52301428 52308314 +
2 domain predictions
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Lj1g3v4766270.1
n.a. PREDICTED: bromodomain adjacent to zinc finger domain protein 1A-like isoform X1 [Cicer arietinum] gi|502113145|ref|XP_004494555.1| chr1 57540299 57543834 +
2 domain predictions
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Lj1g3v4896940.1
n.a. PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform 1 [Glycine max] gi|356505572|ref|XP_003521564.1| chr1 59340023 59343321 -
2 domain predictions
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Lj2g3v1034390.1
n.a. Os08g0414200 [Oryza sativa Japonica Group] gi|115476410|ref|NP_001061801.1| chr2 16469844 16475925 -
2 domain predictions
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Lj2g3v1069240.1
n.a. CCP [Medicago truncatula] gi|357496653|ref|XP_003618615.1| chr2 17389645 17391901 +
2 domain predictions
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Lj2g3v1266120.1
n.a. RING/U-box superfamily protein [Theobroma cacao] gi|508709866|gb|EOY01763.1| chr2 20130831 20132782 -
2 domain predictions
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Lj2g3v1496130.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Cicer arietinum] gi|502162680|ref|XP_004512580.1| chr2 23690418 23695127 +
2 domain predictions
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Lj2g3v1815200.1
n.a. RING finger protein [Medicago truncatula] gi|357483249|ref|XP_003611911.1| chr2 27308704 27334498 +
2 domain predictions
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Lj2g3v2183130.1
n.a. PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Cicer arietinum] gi|502095686|ref|XP_004490513.1| chr2 32700334 32706692 +
2 domain predictions
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Lj2g3v2876160.1
n.a. PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2-like isoform 1 [Glycine max] gi|356554544|ref|XP_003545605.1| chr2 37359583 37380574 -
2 domain predictions
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Lj2g3v3339680.1
n.a. PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Glycine max] gi|356499501|ref|XP_003518578.1| chr2 42793639 42797488 -
2 domain predictions
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Lj3g3v0850570.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 [Cicer arietinum] gi|502164838|ref|XP_004513288.1| chr3 10663431 10665765 -
2 domain predictions
 –