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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0406000 |
| Transcript ID | LotjaGi4g1v0406000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleoside-diphosphate reductase; TAIR: AT2G21790.1 ribonucleotide reductase 1; Swiss-Prot: sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit; TrEMBL-Plants: tr|A0A0B2RLF4|A0A0B2RLF4_GLYSO Ribonucleoside-diphosphate reductase; Found in the gene: LotjaGi4g1v0406000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78222662..78227113) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATGTGGTGAAGAGAGATGGGCGCCAAGAGGCGGTGCATTTCGATAAGATCACCGCGCGCCTTAAGAAGCTCAGTTA TGGTCTCAGTACTGACCACTGCGATCCCGTTCTCGTTGCTCAGAAGGTCTGCGCCGGGGTTTACAAGGGTGTTACCACTA GTCAGCTTGATGAATTGGCCGCTGAAACCGCCGCCGCCATGACTGCTAACCATCCTGATTACGCATCTGTCAGTTTCCCG CCCTTTTTCTTAGGGTTCTGAAATTGTTAACTGTTAATACTCTATCTGATTTGCTTTGATTTTGCGTTTTGGTGCAGTTG GCTGCTAGGATTGCGGTTTCCAATCTGCATAAGAACACCAGGAAGTCGTTTTCAGAGACGTAAGTCTGTTAGATTAGATG TGTATGATATTTTTATTTGTTTCGATGATTCCGATTCCGTGTTGTTAAGGCTTGAATTGTGGTATTTTCAGGGTTAAGAT CATGTACAATCATTTCAATAATAGATCTGGGCTGAAAGCTCCACTAATTGCTGATGATGTATATGAGATAATCATCAAGG TAATGTGATTGTTCAATTGTGATTTGGAATTGTCAATTGATGTTGTGGTGAATGATTTTTACTTTTTGATTTGTTTTTTA TTACAATTGTGATTTTGAATGTTTAATTGATGTTTGTGGTGGATGAATTTTAGTTATTGATTTTGTTTTTTGTACAGTTG TGATTTGGAATGGTTAATTGATGTTTGTGGTGATTGAATTTCAGTTATTGATTTGTTTTTTTGTTGTTGTTATAGAATGC GGCTCGTTTGGACAGTGAGATTATTTATGATAGGGACTTTGACTATGATTACTTTGGGTTCAAGACGCTTGAGAGGTCAT ACCTGTTGAAGGTTCAAGGGCAGGTTGTGGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGAT GACATTGAATCTGCTGTTAAGACTTATCACTTGATGTCTCAACGGTGGTTCACTCATGCATCCCCGACACTTTTCAATGC TGGAACACCTAGGCCTCAGGTACTTTTGCTGTTTACACTCCATAATCGGTGATCTTGTTTTCTGTTTGATTAATACTGTA TGGTGATAGTGGTGAAAATGGTTAAGTGGGTGAAAATTTAGCACATATTCAGCAATATGTAAATTTTTAAATTTTATATG CCGCAATTGAACACTATTCTATTAATAAAAATGTCTCTTGGATGCCAATTACCCCTTTTCTCATGTTTGTAGGTTTGTTC TTTTTATGTTGAATTGTTGATCTTAGACCTCTCATCTAGTTTATTTGCTTTTTGCAGTTGAGCAGTTGCTTCCTTATATG CATGAAAGATGATAGTATAGAGGGGATTTATGATACTTTGAAGGAGTGTGCTGTCATTAGCAAATCGGCAGGAGGAATTG GTGTTTCTGTTCACAACATTCGTGCCATGGGCAGTTACATTCGCGGAACTAATGGGACTTCCAATGGTGTTGTTCCCATG CTGCGCGTGTTCAATGATACTGCTCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTAAATTGTTCATGCTTAGTTG TCAATTCTTATGTTTTATGAAAATATCCAAGTTCTTTTATTTATGAATTTTGTGTGCTTGTTGTAGGTGCATTTGCGGTG TATCTGGAGCCATGGCATGCTGATATTTTTGAATTCTTGGAACTAAGAAAAAACCATGGAAAGGTATGATCCTTTCTTTT ATTCAGAAAGGGTGTGGTAACAATTTTATTTGATTCTTGTGATTTAGTTTTGACCCTATTTCTTAGGTTATGCTAATTAA AGAATTCTTGATTTTATTGCCACTTGCAGGAAGAGCACCGTGCTCGTGATTTATTTTATGCTCTCTGGTTGTCTGATCTC TTTATGGAAAGAGTTCAGAGTAATGGGCACTGGTCCTTGTTTTGCCCCAATGAAGCACCGGGTTTGGCAGATTGTTGGGG TGAAGAATTTGAAAAGCTTTACACTAAGTATGAAAGAGAAGTAAGTTTGATGATGATATTTAGTGTTTTGCAAGTTGCAC AATTCCTAATATGTCTTTTGTTCATTATTGTAACTTTTTTAACTGAATCCTTGTAGGGAAAAGCAAAGAAGGTTGTTGAG GCACAGAATCTTTGGTTTGAAATTTTGAAGTCCCAGATAGAAACTGGAAATCCTTATATGCTTTTTAAGGTGGTCTACCA AAGACATGTTTAACTTTCTTAAAGTTCATTTCAATGACTTTTTAACTTTTTTTTCTTTGCATTGATCATTTTTTCATTTC TATATCCCAGGACACTTGCAACAGGAAAAGCAACCAGCAAAATCTTGGCACAATTAAGTCATCAAACTTGTGCACTGAGA TAATTGAGTACACAAGTCCAACAGAAACAGCCGTGTGCAATCTTGCATCAATTGCTCTACCTCGATATGTAAGAGATAAG GTGAGAAATCCCTGGCATAATTCATGTGTTAGGATTGCAGTTATATGAATTGCAGGCTAACTTGTTCGTGATTTGGTACG TTACTTGTTTATTGCAGGGTGTGCCCATGGAGTCTCATCCAACTAAGCTAGTTGGCAGTCTAGGCTCTAAAAATAGATAT TTTGACTTTGATAAACTAGGAGAGGTACATTTCTTGTTACTCTTAACTACTAACAATGTTAGATGTTCTTTTTGTGTTTC AATGTGTGCTACTGTATTGACATTATCTTTATATGCCTCAAGTCTTGTGATGGTATTAACTGGCTGTGACCAATTACAGG TTACTGCAACAGTGACGACAAACCTTAATAAAATAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAAAGGTCTAAC TTACGACACAGACCAATTGGTATAGGAGTTCAGGGTCTTGCTGATACTTTCATACTACTTGGCATGGCATTTGATTCACC AGAGGTAAATATTGTTTGTGTGGTTGCAGATTAATTATCACTTTAATATTTTAAGCTAGATATTCTTCAACTAAATAGTT ACATGGATATGCAGGCTCAGCAGTTAAACAAGGATATATTTGAGACTATATACTATCATGCTCTGAAAACTTCTTGTGAG TTGGCTGCAAAAGAAGGTCCTTATGAAACATACAGTGGTAGTCCTGTAAGCAAGGTATCTTCTTGAAAGAATATTCCCCT TTTTTTAAGTGTCCTGACTCCTGAGTAGTTGTTATAGTTAGAGGCATGTTCCATCACTGAAGCACAGCTGCATATGTATA CTGTATTTTTGTAGGCACAGAATTAGAAATGTTTATCCAGGATCTTTGCAGTGGCTCAGCTGATTTTTGTGTTGCACAGG GAATTCTTCAGCCAGACATGTGGGGTGTGACACCCTCTGATCGTTGGGATTGGGGTGCACTTCGGAAGATGATATCAGAG ACCGGTGTGAGAAATTCACTTCTTGTTGCCCCTATGCCAACTGCATCTACTAGCCAGATACTTGGCAATAATGAGTGTTT TGAGCCATATACTTCCAATATCTACAATCGCAGAGTTTTAAGGTTTATTTCCATGCCATGTTATTATGCCTTGGTATCTT ATTTGCTCTCTATCTTGTTTGTTAACTGTTTGTCTTTCAGTGGCGAATTTGTTGTAGTGAACAAGCATCTTCTTCACGAC TTGACTGACATGGGATTGTGGTCTCCTGCAATCAAGAATAATATTATCTATGAGGATGGTTCTGTTCAGAATATCACAGA AATACCTAATGATCTGAAAGTCATATACAAGTATGATAATTGTGATTTAGTGACCGACCAAAACTCGACTCCATTATTTT TGTGCTAACATAGTTTAAATTTGTCAGAACCGTTTGGGAGATCAAGCAAAAGACATTGGTTGATATGGCTGTTGATCGAG GATGCTTCATAGATCAGAGTCAAAGCTTAAATATTCACATGGAACAACCCAACTTTGGAAAGCTCACTTCCTTGCATTTT TATGCATGGTCAAAGGTATCAATTTTTGACATTGGTTAAATTTGTCTCTAATAAAAATAAAAAGAGCTTCTATGCTTGGT TTTGATGTTCAATTTATATGTTTGCTTCAGCAATTGGCTCTGCCTCTGGGTTATTTCAATCTTTTGATCTTTTGCTGATT GATGTTTATTCCTTTCTATTTCATCTTGAAAGGGTCTGAAAACCGGGATGTATTATCTCCGAACACGAGCTGCAGCCGAC GCCATCAAGTTTACTGTTGATACCGCTGCAATTAAAGTAAGAACAATTCACTGTGATCAATTTTCCCATTCATGTGATTT GTACATTTAAATGCTCAATATCTGTTGTAAATGCAGGACAAGCCTAAGGTGGAGGAGGATGATAATACCAAGATGGCACA GATGGTATGCTCTTTGACAAACCGAGATGAGTGCTTGGCTTGTGGAAGTTGA
CDS sequence (LotjaGi4g1v0406000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTGGTGAAGAGAGATGGGCGCCAAGAGGCGGTGCATTTCGATAAGATCACCGCGCGCCTTAAGAAGCTCAGTTA TGGTCTCAGTACTGACCACTGCGATCCCGTTCTCGTTGCTCAGAAGGTCTGCGCCGGGGTTTACAAGGGTGTTACCACTA GTCAGCTTGATGAATTGGCCGCTGAAACCGCCGCCGCCATGACTGCTAACCATCCTGATTACGCATCTTTGGCTGCTAGG ATTGCGGTTTCCAATCTGCATAAGAACACCAGGAAGTCGTTTTCAGAGACGGTTAAGATCATGTACAATCATTTCAATAA TAGATCTGGGCTGAAAGCTCCACTAATTGCTGATGATGTATATGAGATAATCATCAAGAATGCGGCTCGTTTGGACAGTG AGATTATTTATGATAGGGACTTTGACTATGATTACTTTGGGTTCAAGACGCTTGAGAGGTCATACCTGTTGAAGGTTCAA GGGCAGGTTGTGGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGATGACATTGAATCTGCTGT TAAGACTTATCACTTGATGTCTCAACGGTGGTTCACTCATGCATCCCCGACACTTTTCAATGCTGGAACACCTAGGCCTC AGTTGAGCAGTTGCTTCCTTATATGCATGAAAGATGATAGTATAGAGGGGATTTATGATACTTTGAAGGAGTGTGCTGTC ATTAGCAAATCGGCAGGAGGAATTGGTGTTTCTGTTCACAACATTCGTGCCATGGGCAGTTACATTCGCGGAACTAATGG GACTTCCAATGGTGTTGTTCCCATGCTGCGCGTGTTCAATGATACTGCTCGTTATGTTGATCAAGGAGGAGGCAAGAGGA AAGGTGCATTTGCGGTGTATCTGGAGCCATGGCATGCTGATATTTTTGAATTCTTGGAACTAAGAAAAAACCATGGAAAG GAAGAGCACCGTGCTCGTGATTTATTTTATGCTCTCTGGTTGTCTGATCTCTTTATGGAAAGAGTTCAGAGTAATGGGCA CTGGTCCTTGTTTTGCCCCAATGAAGCACCGGGTTTGGCAGATTGTTGGGGTGAAGAATTTGAAAAGCTTTACACTAAGT ATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTTGAGGCACAGAATCTTTGGTTTGAAATTTTGAAGTCCCAGATAGAAACT GGAAATCCTTATATGCTTTTTAAGGACACTTGCAACAGGAAAAGCAACCAGCAAAATCTTGGCACAATTAAGTCATCAAA CTTGTGCACTGAGATAATTGAGTACACAAGTCCAACAGAAACAGCCGTGTGCAATCTTGCATCAATTGCTCTACCTCGAT ATGTAAGAGATAAGGGTGTGCCCATGGAGTCTCATCCAACTAAGCTAGTTGGCAGTCTAGGCTCTAAAAATAGATATTTT GACTTTGATAAACTAGGAGAGGTTACTGCAACAGTGACGACAAACCTTAATAAAATAATTGATGTTAATTACTACCCAGT TGAAAATGCAAAAAGGTCTAACTTACGACACAGACCAATTGGTATAGGAGTTCAGGGTCTTGCTGATACTTTCATACTAC TTGGCATGGCATTTGATTCACCAGAGGCTCAGCAGTTAAACAAGGATATATTTGAGACTATATACTATCATGCTCTGAAA ACTTCTTGTGAGTTGGCTGCAAAAGAAGGTCCTTATGAAACATACAGTGGTAGTCCTGTAAGCAAGGGAATTCTTCAGCC AGACATGTGGGGTGTGACACCCTCTGATCGTTGGGATTGGGGTGCACTTCGGAAGATGATATCAGAGACCGGTGTGAGAA ATTCACTTCTTGTTGCCCCTATGCCAACTGCATCTACTAGCCAGATACTTGGCAATAATGAGTGTTTTGAGCCATATACT TCCAATATCTACAATCGCAGAGTTTTAAGTGGCGAATTTGTTGTAGTGAACAAGCATCTTCTTCACGACTTGACTGACAT GGGATTGTGGTCTCCTGCAATCAAGAATAATATTATCTATGAGGATGGTTCTGTTCAGAATATCACAGAAATACCTAATG ATCTGAAATTTAAATTTGTCAGAACCGTTTGGGAGATCAAGCAAAAGACATTGGTTGATATGGCTGTTGATCGAGGATGC TTCATAGATCAGAGTCAAAGCTTAAATATTCACATGGAACAACCCAACTTTGGAAAGCTCACTTCCTTGCATTTTTATGC ATGGTCAAAGGGTCTGAAAACCGGGATGTATTATCTCCGAACACGAGCTGCAGCCGACGCCATCAAGTTTACTGTTGATA CCGCTGCAATTAAAGACAAGCCTAAGGTGGAGGAGGATGATAATACCAAGATGGCACAGATGGTATGCTCTTTGACAAAC CGAGATGAGTGCTTGGCTTGTGGAAGTTGA
Protein sequence (LotjaGi4g1v0406000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVVKRDGRQEAVHFDKITARLKKLSYGLSTDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAAR IAVSNLHKNTRKSFSETVKIMYNHFNNRSGLKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ GQVVERPQHMLMRVAVGIHKDDIESAVKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV ISKSAGGIGVSVHNIRAMGSYIRGTNGTSNGVVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLELRKNHGK EEHRARDLFYALWLSDLFMERVQSNGHWSLFCPNEAPGLADCWGEEFEKLYTKYEREGKAKKVVEAQNLWFEILKSQIET GNPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVRDKGVPMESHPTKLVGSLGSKNRYF DFDKLGEVTATVTTNLNKIIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALK TSCELAAKEGPYETYSGSPVSKGILQPDMWGVTPSDRWDWGALRKMISETGVRNSLLVAPMPTASTSQILGNNECFEPYT SNIYNRRVLSGEFVVVNKHLLHDLTDMGLWSPAIKNNIIYEDGSVQNITEIPNDLKFKFVRTVWEIKQKTLVDMAVDRGC FIDQSQSLNIHMEQPNFGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTAAIKDKPKVEEDDNTKMAQMVCSLTN RDECLACGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 809 | 809 | 0.0 | – | |
| ProSiteProfiles | 1 | 92 | 92 | 19.296 | ||
| Pfam | 1 | 89 | 89 | 1.3E-15 | ||
| PANTHER | 1 | 809 | 809 | 0.0 | ||
| SUPERFAMILY | 6 | 214 | 209 | 1.7E-66 | ||
| Gene3D | 74 | 769 | 696 | 0.0 | – | |
| Pfam | 142 | 212 | 71 | 2.8E-24 | ||
| TIGRFAM | 145 | 762 | 618 | 1.2E-212 | ||
| CDD | 167 | 761 | 595 | 0.0 | – | |
| SUPERFAMILY | 215 | 771 | 557 | 2.99E-190 | – | |
| Pfam | 216 | 758 | 543 | 1.5E-185 | ||
| PRINTS | 293 | 312 | 20 | 8.0E-67 | ||
| PRINTS | 423 | 434 | 12 | 8.0E-67 | ||
| PRINTS | 480 | 503 | 24 | 8.0E-67 | ||
| PRINTS | 518 | 540 | 23 | 8.0E-67 | ||
| PRINTS | 546 | 569 | 24 | 8.0E-67 | ||
| ProSitePatterns | 600 | 622 | 23 | - | ||
| PRINTS | 611 | 638 | 28 | 8.0E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0406000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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