Domain Predictions — View

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PIRSF001028

Source: PIRSF

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004556 View details of GO:0004556 AmiGO InterPro QuickGO	Molecular function	Alpha-amylase activity	Catalysis of the endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more alpha-(1->4)-linked D-glucose units.	Subterm of GO:0016160
GO:0005509 View details of GO:0005509 AmiGO InterPro QuickGO	Molecular function	Calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).	Subterm of GO:0046872
GO:0005975 View details of GO:0005975 AmiGO InterPro QuickGO	Biological process	Carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.	Subterm of GO:0044238 GO:0071704

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v0290420.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha-amylase [Medicago truncatula] gi\|357437821\|ref\|XP_003589186.1\|	Domains G3DSA:2.60.40.1180 G3DSA:3.20.20.80 IPR006046 IPR006047 IPR012850 IPR013775 IPR013780 IPR013781 IPR015902 IPR017853 NON_CYTOPLASMIC_DOMAIN PF00128 PF07821 PIRSF001028 PR00110 PTHR10357 PTHR10357:SF153 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00642 SM00810 SSF51011 SSF51445 SignalP-noTM_EUK cd11314	27
LotjaGi5g1v0002500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha-amylase; TAIR: AT1G76130.1 alpha-amylase-like 2; Swiss-Prot: sp\|Q8LFG1\|AMY2_ARATH Probable alpha-amylase 2; TrEMBL-Plants: tr\|C6TCX9\|C6TCX9_SOYBN Alpha-amylase; Found in the gene: LotjaGi5g1v0002500	Domains G3DSA:2.60.40.1180 G3DSA:3.20.20.80 IPR006046 IPR006047 IPR012850 IPR013775 IPR013780 IPR017853 PF00128 PF07821 PIRSF001028 PR00110 PTHR43447 PTHR43447:SF18 SM00642 SM00810 SSF51011 SSF51445 cd11314 mobidb-lite	20
LotjaGi5g1v0002500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha-amylase; TAIR: AT1G76130.1 alpha-amylase-like 2; Swiss-Prot: sp\|Q8LFG1\|AMY2_ARATH Probable alpha-amylase 2; TrEMBL-Plants: tr\|C6TCX9\|C6TCX9_SOYBN Alpha-amylase; Found in the gene: LotjaGi5g1v0002500	Domains G3DSA:2.60.40.1180 G3DSA:3.20.20.80 IPR006046 IPR006047 IPR012850 IPR013775 IPR013780 IPR017853 PF00128 PF07821 PIRSF001028 PR00110 PTHR43447 PTHR43447:SF18 SM00642 SM00810 SSF51011 SSF51445 cd11314 mobidb-lite	20
LotjaGi5g1v0002500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha-amylase; TAIR: AT1G76130.1 alpha-amylase-like 2; Swiss-Prot: sp\|Q8LFG1\|AMY2_ARATH Probable alpha-amylase 2; TrEMBL-Plants: tr\|C6TCX9\|C6TCX9_SOYBN Alpha-amylase; Found in the gene: LotjaGi5g1v0002500	Domains G3DSA:2.60.40.1180 G3DSA:3.20.20.80 IPR006046 IPR006047 IPR012850 IPR013775 IPR013780 IPR017853 PF00128 PF07821 PIRSF001028 PR00110 PTHR43447 PTHR43447:SF18 SM00642 SM00810 SSF51011 SSF51445 cd11314 mobidb-lite	20
LotjaGi5g1v0028300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha-amylase; TAIR: AT4G25000.1 alpha-amylase-like protein; Swiss-Prot: sp\|P17859\|AMYA_VIGMU Alpha-amylase; TrEMBL-Plants: tr\|A0A151S840\|A0A151S840_CAJCA Alpha-amylase; Found in the gene: LotjaGi5g1v0028300	Domains G3DSA:2.60.40.1180 G3DSA:3.20.20.80 IPR006046 IPR006047 IPR012850 IPR013775 IPR013780 IPR017853 NON_CYTOPLASMIC_DOMAIN PF00128 PF07821 PIRSF001028 PR00110 PTHR43447 PTHR43447:SF20 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00642 SM00810 SSF51011 SSF51445 SignalP-noTM cd11314	25
LotjaGi5g1v0028400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Alpha-amylase; TAIR: AT4G25000.1 alpha-amylase-like protein; Swiss-Prot: sp\|P17859\|AMYA_VIGMU Alpha-amylase; TrEMBL-Plants: tr\|A0A151S7Y0\|A0A151S7Y0_CAJCA Alpha-amylase; Found in the gene: LotjaGi5g1v0028400	Domains G3DSA:2.60.40.1180 G3DSA:3.20.20.80 IPR006047 IPR012850 IPR013775 IPR013780 IPR017853 NON_CYTOPLASMIC_DOMAIN PF00128 PF07821 PIRSF001028 PTHR43447 PTHR43447:SF20 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00642 SM00810 SSF51011 SSF51445 SignalP-TM SignalP-noTM TMhelix cd11314	25

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd11314	CDD	1	16.67