Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0004500.2

Overview

Field Value
Gene ID LotjaGi5g1v0004500
Transcript ID LotjaGi5g1v0004500.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|V7CTH6|V7CTH6_PHAVU Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:1092556..1102451) extracted from Lotus japonicus Gifu genome v1.2.

AAAATGATTGCAGAGGGCTTCGAAGACGAGGAGAAATGGCTCGCCGAGGGGATCGCCGGCGTTCAACACAACGCATTCTT CCTCCATCGCGCACTGGTATTTGTATTTCCTTCCTTTTTCGCAACCTAATTCATTCCCTTTTCCAATTCTCTCTTTACCG AATCCAATTGAATCGCAGGATGACAATAATCTCAGAGACGCCCTCAAATACGCAGCGATGATGCTATCGGAGCTTCGAAC TTCTCGGCTCTCACCTCACAAATATTATGAACTCTGTAAATTCTTCGAACTTCTTCACATCATTCATTCATGCTGTCATA TTAGACTCAATTCTTCATTTCGATTTCCTGCTTCTTGTGCTTAAGATATGAGAGCCTTCGACGAGCTCAGGAGGCTCGAG ATCTTCTTCAAAGACGAAACCAGACACGGTGTTGCCATTGTTGATCTCTATGAGCTTGTTCAGCACGCTGGAAATATATT GCCTAGACTGTAAGTGTTTTTTCCCCTGCAATGAACACCAATCAATGTTTGTCTTTTAATCTGAACTTGAATGGTTGTGC AATTTCAACAATTGGCATTAGTTTATGCATGCTTGTGACTCTCTTGTTGTTAATTTACTGCTAGGTATCTTCTTTGTACG GCAGGATCCGTTTACCTCAGATGTAAGGATGCTCCTGTAAAGGACGTTCTTAAAGATCTAGTAGAAATGTGCCGCAGCGT TCAACATCCAATTCGTGGTCTATTCTTGAGGAGTTACCTGTCTCAAATCAGTAGAGACAAGTTGCCTGATATCGGCTCTG AATATGAAGGCGGGTAAGGCCGTTAATTGCTTTTGTTTAGCAATGCATTAATAGTTTGTTTATTGCCTTACGTTTTTCCA TCTTTTTAATTAAATAGTAGATTGTAATTAAAATGTCACTAGAAAAATAACATTTCGTTATGTGTACTTCCACTCCTACA TGTGATGTAACCATTTTTTTTGTTTCACTTTTGATTGTCGAAGATTTGTATTGTTGGTCTTATATTAGGTTAGGGTGAAT AAGAATTAAAAGAACGGAGATTAATAGGTGCCGCTTTTTCCCTGCAGGGATTCTAACGGTGTGATGGATGCGGTTGAATT TGTTCTACAAAATTTCACAGAAATGAATAAGCTTTGGGTTCGATTGCAGCATCAGGTTCTTTGAACTTCTCTAGTTCTTA TATAATCTTACCTTATAAGATGCATAGCACCACAGTACTTGCATGCCATAGCCTTAGAGGTAAAAATAAATCATGAGAAC ATGATTTCTGGCCATGCAGGTGTTATGGTGTTTGTGGATCATGCTTAATCTTTGGGGATCCTGAGCTGAGGCCTTCAATT GGGCTTTCTGGTCTGCAGGGACCTGGTCGGATAAGAGACAAGAAGGAAAAAGAAAGGAATGAGCTTCGCGATCTTGTAAT ATAAGAATACGATTCTATCTCCTGATGAAGCTGTGTGCTATACATTTGATAGATAAGTTATGGGGTTTCCTTTTGTCTAA TTACTAGGTAGGGAAGAATCTCCATGTTCTCAGTCAAATAGAGGGAGTGGACCTTGAAATGTATAAAGACACCGTCCTTC CAAGTGTCTTAGAGCAGGTCTAATAAAGTACTTTTTCTCCCCAAAGAATAATTTTCCTCATATTGTATGCCATGATGTTG TAAACTTGTAATGTATCTTGACTGTCTAAATTGGCTTTAGCAGGTTGTCAATTGTAAAGACGAGCTTGCCCAATTTTATC TCATGGAGTGCATAATCCAGGTTTTTCCAGATGAGTACCACTTGCAGACACTTGAGACACTGTTAGGTGCTTGCCCCCAG TTGCAGGTGGGTAACTTGATTAATTGGAAATAAATGACCCTTTATGTGCTTGACATTTGAAAAGATATACTAGAGAGACT GGCCAGCCTTTCAGATGCATAGTATTCTGGAGATTTTATTCCTTTCACCATGTACAGATTATTTTTCAGTGAATAATATT CAGGAATTTATTCCTTTCAACTTTGAACTAAAATTCTGTTGCTGCTCACAATCTTCATGAGGTGGGGGGGATTTCAATTT CACTTCTTATTATTCAAACACTTTTTACAAATGAAGGAGTTTACATTGATGAAATCTAATTTCTGAAGTTTGAAAATTCT CCATTTGAACACAACCTTAGTTTTGTTTTTGTTTTTTTATTTTTTGATAGGAAAATGTTAGTTGTTAGAAATGTTAGTAA ATTAATCCCTCCTCCGGGTTCGAACCCGGGACCCTTCACCCCACCCAACCCTTATGTTCCTAGCTCTTACCACCTGAGCT ATCATTTGGGGACTAGTTTTGTTTTTCTTAAATGTGCTTGACTAGTGTTGTGGGCTTCTTGCATTGGTGATCACAAAGTT AACTGGATGGCACGGGTTATACACGTGACTTTCTTTTAGAATATATGTGGTGGGGATTTTCTAACATGCGAAGAGTGAAG CAATGCAAAAGCTTTCATTGATAAATTTGGTTCTTTTTATCTCTGTTTTTCTTTTAGCTGAAAACCTTTTTCTTCTCCCC TTTGACTGCCTGGATTGTATTTGCAGCCTGCCGTAGACATCAAGACAGTGTTATCTCAGTTAATGGATAGGTTGTCAAAT TATGCTGCCTCAAGTACTGAAGTAAGTTTTATGCAGCATTTGTTGTAAGTTAAGCTTCCATTTGTTATTTATATCCTTCA CTTCTCAGGCATTGCCTCAATTTCTGCAAGTGGAAGCATTTGCCAAATTAAGCACTGCAATAAGCAGGGTAAGCTGGCTT TTATTGAGTTTGCTACTTTACTTAAAAGCTTTTTTTAGAGAGCAACAGAAAAAAGATGTCCTGATATATCTATGGATAGT GAAGAATCAAAATGTGGTGATTTTGACCAATGGCTTTTTTCCTTTTATGATTAATATTAAGGAGTTCCTTTGTCGTGTTG GTAATAAAACTGAACTTAGTCATTTGAAGACATTTCTGTCGCAGGGATTTCTCTCTACTATAGTTCCCTTCTCTCGTTTT AAAATATTTATGAAGTTATATGTTTAGACCAGAGGTTGTACAAGTTGGCAGCTCACTGTTAGAAGTACTGCAAATAAAAG ATTAATCCTCAGGCTTGTTTTAGGTGATTCATAAAGTTGAGTCTATGTAATGTGGCTATCATGGTTTTTGTTCGGCGCAA TATTTATAACCCCCCCATCCAAAATTCCATTGTAGATCTAGTGACCGTTACGTAATAGTAGACCTTCTGTATAATAGGAT GATTAATTCTCTCAACTTTTCTATGCGGAAACAAAATATTGATCAAGTCATTTGATCTGATAGTTCTAACCTTATTCCCC TCGGAACTCCCCCATCATGAAAAAAGAATGAAGAGGAAGAAAGGAATGCTGCTCTCCTCTTTGTGCCTACTAATTCTGAT TTAAGTTGCATGGACTAGGGTATTGCAATCTAAGACCATAACTTGCATTTGACTGCAGGTGATAGAAGCACAGGTTGACA TGCCTATTGTTGGAGCAATAGCTTTGCATGTCTCTCTGCTTACATTTACTCTTCGTGTTCACCCAGATCAACTAGATTAT GTGGATCAAGTATTGGTATGTCAGAAATTCTTGTTCTGCTATATTTATAAGGCTCTGGGAGGACAGGGTTTGCATCTTAG CTAAGTTGCATCTTTTCTGGAATTTATGCAGGGATCATGTGTCAAGAAGCTTTCTGGAAAACCAAAACTCGATGACAACA GAGCAACTAAGCAAGTTGTTGCACTTTTAAGTGCTCCCCTTGATAAATACAATGATGTTGTGACTGCCTTGACACTTTCC AATTACCCTCGTGTAATGGATCATCTTGATAATGAGACGAATAAAGTAATGGCAATGGTCATTATCCAAAGCATTATGAA GAATAACACTTGCATCTCTAATGCTGATAAGGTATTTACTTTGCTATTGGTTTAACTTAACAACAAGTTTGTCTCTTTGT AACGGGGCTCAATGTGCTTTCTGTAGGTGGAAGTTTTATTTGAACTAATAAAAGGGCTTATAACGGATTTGGATGGAACA GCTGTGGATGAGGTGTGCAGGAGAGTATTTTTGTTTGACTTTTTGTATGACCTGTAATTTTTTAAACATTTATTAAAATT TCTTTATATGTCCAAACTTATTAAATATGTCTATGCTTATTTCCTAAATAAATATATTACTTGCTTAAGCTCAGCCCAAT TTAAATACATTATCATTTACCGATAGGTTGATGAGGAAGATTTCAACGAAGAACAAAATTCTGTTGCTCGCCTCATACAC ATGCTTCATAATAATGACCCAGAGGAAATGTTTAAGGTAACTCTATAAGTGTGTTCAGAGTCAAATTGAATTCCACTAGT TTTTTTTATTATTATCTACTTCACATAACTATTGACACACGGATTTTCAGATTATATGTACTGTAAAGAAGCATATTATG AATGGAGGACCAAAGCGCCTACCCTTTACAGTTCCTTCCCTAATATTTTCTGCACTTAGGGTATCTTTCTTCCTTGATTG TACTATTCTTTCAATTTGTTTTTTCACTATTATAATTAATATGCTTCTTGAGTTGAATTTACATGTTAGTGGATATAGAA GAATTACTTGAATGGAGTTTTTAGGTATTGTCAGGCCATATTCCATAGTAATACATGGCTTCTTTGAACCATGTATGCTA GAGGTTGGGAGTTGGGACCAAGTATGTATTTTGAAAATTACAAATACTCAGGTAGCATTTGGTATACATGTTTGAATAGA ACAGAACATAATATATCCTAATCCATGTTTGATGAAAATAATATAGAATGGGTGGGACATATGGTAAAAAAAGAGCGGTA CACTTTGCTTCTACTAAAATGGTGGAACCAAAGATAACATAATAGAACAGGCTGTCCTGTTATGTTTCTTCTGTATGCTA AACACTACTTTTATCTTGATGAGGAATTGGCAAGCGCATCAAAATGTATCAATTGGGAAATTATTAAGTAGAGTATGGTC TCACGAGGAATTGGAATTCAATTATCATTTCTCAAAGTTACAATTAATTGAATCAAGCAATAATGGGATGAAATTGGTTG AATGAACAAAAATTTAATGAAGAGAACTAGAACTTAAATCAAAGTAATAGGGAAATTTCAAGAAGCTATTAACGTATGGG AATTCTATGGGTCAATGGTATCTAGGGTTGGAATCCTCTCAATCCTTCCTCAATGTAATTCAAATTACTCGCAGTTCAAG AAAATATAGTTAAGATTTAACTCACATATTAGGTCAAATCGAAATCCTGGACCTTCAACCCCTTTGTTCAAAACCAAGTA CCCTAATTCCTTAGAAACCCCAAATTTGAACAAGCATTATGAACAAGAATTCACATGATCTCTGTTAGATATCTTGTAAA TAAATATGATATCTTTTCTTTATGGTTACTTGGTAACATACTCATGTAATTAAGGAAGTGATCATGTAAATAGGGAAATA TAATATTTCTAGGATATTTTGTATTTCTGGTGCCTATTATAAATAATGACCCCTGTTGTGTAGTTTACACACACAGACTA AATCCAATGTCTCTCGGTCTCTCCTAATTTTGCAAGATATCGGAGCCAGGTTCGTCCTCTATGACCTGTGCCATCACTAT TTTCTGTTGTTGAGAGCATGACGAGAGGCAATCCTAATCCGTCGTCATACCCCATTGTCCATCAGCGCATATCTTTTCCT GGAAACCGTGTCTCTTCTCCGGTTTTTGGCTCTTCCCGCTGTCGTGTTTCATTCTGCCAGTTTTTCTGTTTCACCTGCCG TGTTTCATTCCGGTAGTGTTTCTGACCTTACCGCATGTCGTGACTCATTCTGGCAGATTTTCTGGCTTACCCCAGTGTTT CATTCCGACGGTGTTTCCAGCTTCTGTCTGCATCATTCCAACAACCTTCTCCAGCCACTTCCACCGCGTCCAGCCCTTGA TCCGGCCGTGGCTTGCACCGCCGGATTCACCTCGCTCTCCCAGCTCCAGATCTTCCCTTACTTCTTCCGTTTGAGATATA TGCCCCTCTAGATCTGAGTTTTCAACCTCAATTTTGCTGTTTTTCGGCGTTTCTCTCTCCTCTTTGCAACCCATGGCTTC CTGTCTCTCCCACGTCCCATCTACCGATGTTGGGGCTTTGCCGATGTGAACTTGTTTTTCTGTTTGGTGTTTCTCTCTCC GGCAGTTGATTAATTATATTTGTAACAAGCTATGCATATGACATATGCTTCAGCTTAAGGGGGAATGTTAGATATCTTGT AAATAAATATGTGATGGGTACTTGGAGTTAGTTAGTCAGTTAAGGGTTAGCCTATAGAGTTAGTTAGTTAGTCAGTTAAG GGTTAGCCTATAGAGTTAGTTAGTTAGTTAAGGGTTAGCCTATAAATAAGAGAGTGTGAAGAGCGTTTGGGTATCTTTTG GATCATTTAGGAAATTGGGACTAGGGAGAGAGTAGAGCCTCTCGAATGCTCTACAACACTGTACATTCTCTCTAATTCCT ATTTGGGGATTAGGGTTCATATTCTATAATATCCCAGTTTCTATCTTCTTCTTGACTGGGTTCTATCAATATGATATCTT TTATTTATGGTTACATGGTAACATAATCATGTAATTAGGGAACTAGGTATGTAAATAGGGAAATAGAATATTTCTAGGAT ATTTTATATTTATTGTGCCTTTATGGGTCATATTATAAATAATGACCTCCATTGTGTAGTTTTCACACAGAGATTAAATC TAATATTGTCTCTCGGCTTCTCCTAATTTTACAATTTCATAACTATCAAACTATCAAGCTTATTTGTAGAACTTATCTAA TATGGTGGCTCACTTTAATTCCAATTCCATCCCCAATTTCTGACTTTTGAAATTGAAACTGTATCAATTTTAGGGCGCCC AATCCAGTATTAAGCACTTACCTAATCACTCAATTAAAACCAATAAGCTTGAATAAAGATACAAGAATCAAATACGCAGA GTTTGGAGTGAGGTTCATCATTCTTTAACCTAGAAAGTTTAGTTACACATGGTAGAAACTAGAAACTAAGATAGTCACTA AAAGAGAAAAGATTAGATGAAACTCCATTACAAATTGGTGAACCCAGCCACTTAGTTCCTCAAAGTTGTGGGTCTTAAGT TCCAATGACACAAGAGAGAGATATGAGCAAATCTCATCATCCCATACTCGTCAGAACTCCTTCAGTTAGTATTCATATCG ACTTTCATAACTGATAGCGTGATCATGTTCATTCAATGTGTGGCAGTGCTTTATAAAAGTCCAGAGTATTTTCTAGTCCC AATTGGATACCTTTGAGGTAGTAAGGTCTAAAGATATTTACTTATATTGTATGCCACCCTCTGGAGTTTGGGGTTTACTT CTTGAGAATGATACATGGGAGTGAAGAACTCAGCTCTTTCTGTGACTTCTTAATTCTTTTTGAATCATGTTTTGCTGCAG TTAATCAGGCAATTGCAAGGGCAGGATGGAGACGTAGTGGGAGAAGAAGTTCCTTTAACACCCAAAAAAATATTTCAGCT TTTAAATGAGGTGATTTAAAATGTATAATCTTGGTTTCGAACAATAATTTACTTTCTCTCTATAAGCCCAAAGAGGGCGC ACAACTCTAAAATATTCTTGATTGAACTACCTTGAAATACTTTTGTTCGAGTTTATCAGCATGTTGTATAGTGTGTTATG TAATTTCTGATATTTATGTATTATTTTATGCGCCATATATTGGTATAATTAAAATTATGCGGTGGACAAAAAACATCTAC TTTGTTGCAGATCATTGAAGCCCTTTCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTATCTGCAATGTGCGGAGG TACACTTGACCCTGCAAAATTAAATTATTAAATTGTTATCACTTCTGTTTCCACCTTTCGTTCCGAACTCCCAAAGAAAC TCTCAGAAGACCCAGAACAGGGATTTGGATGAAATTAGACTTTGTTGAGAAGTCCCACATTGACTAGAGATATGGCCAAG ATAACCCTTATATATGGGTAGACAATCCTTACCTCTTGAGCTAGCTTTTGGGGTAGAGTTAGGTCTCCCAAATTCTAATA GACTTGAAAAATGATTCTTTGCTACCCAATCATATTCTTTCGGGGCATAATTTTTCCCCATCACATTGTCAGTTTTGCTC TTTAGTCTGAATGGGGAAATAACTTTCCACACAGGACTTCGCTATACTACTATTAACTTATGTTTTCCTGACATTATTAT GACTCTTTATCCTGATTATGATTAGTCTTTTATATTTGCATAATTGTTTCAGTGACTATTTTTTAAACCTCTTGATTTTC TTTCTGATAATCAGGCTGCTAATGACTGTGAACTCGAGCCTGTTGCCTATGAATTTTTCACACAGGCATTTGTATTATAT GAAGAAGAAATTGCGGTAATTATTAATAAAGCAATCAAATTTAAGATTTTCTTTATACAACTAAACTGTGGCCTTCAGTC CTTTACTAATCCGTCTGTTAATGTTGTAGGATTCTAAAGCTCAGGTAACTGCAATACACTTAATTATCGGGACTCTCCAG AGAATGAACGTCTTTGGTGTTGAGAACAGGGATACGTTAACACACAAGGCCACAGGGGTATATTATTTTTTAATTGTTTT CCATTTTTCTCTCTTCTTTTTCCTTAAAAGGATTTGTTAAGAAGATGGACGATGATGGAGATGAGTGGGGACAAGAGGGA AGGGAATAGTTCCTCTTGCTTGGGGGTTTAAAAAAGGGAAAGGGAATGTTAGGGCAATCATTTAACTTCTCCCTCAAACT AAGCCACTTATAATAGTAAATAAAAACTAAATTGAAATGTTACACTTCTAATAGGTCTTTCGCATTCTCATCCTTCACTA TTTATTCATACATGTGGAAGGCAACACTTTTCCATGTCATCAACCCCTTCCTATTCTACTTTATTCAATACCCGTCTTCC CAAAACTTCTACCCCGAGTTTGTGAAAAAAATACATTACAAGTTAAAGGAAAATGGGTTGTGTGGCAACATTTATTGAGC TTGAAGTTCTATCTTTTCGCAGTATTCAGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGTGCGGTTTATGCATGCTCAC ATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGACGGAGAAAGGTATGCTGGCACATACTCTAATAGGTTTAATTTT TATGATTTGATTGATTTTATGCACGATGCCTCTTCTTACTTTGTTTATGAAGTCATTATGACCTTTATTCAATATAGCAT CATGGTTCATGAAGTATGAATGCCCATGAATTATCAAATATAATTATGCCTCTGCATAATTGATGCATGAGTTGTTGTCT ATTTTGTTTTCTGTTTTTTCCTCTTGGGGTGTGGATGTTGACTGTTTCATTGCAGAGTATTGCTTTGCCTTAAGCGTGCT TTGAGGATTGCAAATGCTGCTCAGCAAATGGCCAATGTTGCTAGGGGTAGCAGTGGTCCAGTGACGCTTTTTGTTGAAAT ACTGAACAAGTTAGTCACCTTAAGCTATAAAACTGCTTGATATATTATTTTTACTACTTTTTACTTATGGATAAGGATGT TCCAGGTACATTTACTATTTTGAGAAAGGAAACCCACAGATCACCAGTGCTAATATCCAGGGGCTTATAGAATTAATCAC GAGCGAAATGCAGAGTGACACTGCATCAGCTCTTCCAGTTTCAGATGCATTCTTTGCCAGCACATTGAGGTACATCCAAT TCCAAAAACAGAAGGGCGGTATACTGGGTGAGAAATATGATTCTATCAAGGTATAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0004500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGCAGAGGGCTTCGAAGACGAGGAGAAATGGCTCGCCGAGGGGATCGCCGGCGTTCAACACAACGCATTCTTCCT CCATCGCGCACTGGATGACAATAATCTCAGAGACGCCCTCAAATACGCAGCGATGATGCTATCGGAGCTTCGAACTTCTC GGCTCTCACCTCACAAATATTATGAACTCTATATGAGAGCCTTCGACGAGCTCAGGAGGCTCGAGATCTTCTTCAAAGAC GAAACCAGACACGGTGTTGCCATTGTTGATCTCTATGAGCTTGTTCAGCACGCTGGAAATATATTGCCTAGACTGTATCT TCTTTGTACGGCAGGATCCGTTTACCTCAGATGTAAGGATGCTCCTGTAAAGGACGTTCTTAAAGATCTAGTAGAAATGT GCCGCAGCGTTCAACATCCAATTCGTGGTCTATTCTTGAGGAGTTACCTGTCTCAAATCAGTAGAGACAAGTTGCCTGAT ATCGGCTCTGAATATGAAGGCGGGGATTCTAACGGTGTGATGGATGCGGTTGAATTTGTTCTACAAAATTTCACAGAAAT GAATAAGCTTTGGGTTCGATTGCAGCATCAGTTCTGGCCATGCAGGTGTTATGGTGTTTGTGGATCATGCTTAATCTTTG GGGATCCTGAGCTGAGGCCTTCAATTGGGCTTTCTGGTCTGCAGGGACCTGGTCGGATAAGAGACAAGAAGGAAAAAGAA AGGAATGAGCTTCGCGATCTTGTAGGGAAGAATCTCCATGTTCTCAGTCAAATAGAGGGAGTGGACCTTGAAATGTATAA AGACACCGTCCTTCCAAGTGTCTTAGAGCAGGTTGTCAATTGTAAAGACGAGCTTGCCCAATTTTATCTCATGGAGTGCA TAATCCAGGTTTTTCCAGATGAGTACCACTTGCAGACACTTGAGACACTGTTAGGTGCTTGCCCCCAGTTGCAGCCTGCC GTAGACATCAAGACAGTGTTATCTCAGTTAATGGATAGGTTGTCAAATTATGCTGCCTCAAGTACTGAAGCATTGCCTCA ATTTCTGCAAGTGGAAGCATTTGCCAAATTAAGCACTGCAATAAGCAGGGTGATAGAAGCACAGGTTGACATGCCTATTG TTGGAGCAATAGCTTTGCATGTCTCTCTGCTTACATTTACTCTTCGTGTTCACCCAGATCAACTAGATTATGTGGATCAA GTATTGGGATCATGTGTCAAGAAGCTTTCTGGAAAACCAAAACTCGATGACAACAGAGCAACTAAGCAAGTTGTTGCACT TTTAAGTGCTCCCCTTGATAAATACAATGATGTTGTGACTGCCTTGACACTTTCCAATTACCCTCGTGTAATGGATCATC TTGATAATGAGACGAATAAAGTAATGGCAATGGTCATTATCCAAAGCATTATGAAGAATAACACTTGCATCTCTAATGCT GATAAGGTGGAAGTTTTATTTGAACTAATAAAAGGGCTTATAACGGATTTGGATGGAACAGCTGTGGATGAGGTTGATGA GGAAGATTTCAACGAAGAACAAAATTCTGTTGCTCGCCTCATACACATGCTTCATAATAATGACCCAGAGGAAATGTTTA AGATTATATGTACTGTAAAGAAGCATATTATGAATGGAGGACCAAAGCGCCTACCCTTTACAGTTCCTTCCCTAATATTT TCTGCACTTAGGTTAATCAGGCAATTGCAAGGGCAGGATGGAGACGTAGTGGGAGAAGAAGTTCCTTTAACACCCAAAAA AATATTTCAGCTTTTAAATGAGATCATTGAAGCCCTTTCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTATCTGC AATGTGCGGAGGCTGCTAATGACTGTGAACTCGAGCCTGTTGCCTATGAATTTTTCACACAGGCATTTGTATTATATGAA GAAGAAATTGCGGATTCTAAAGCTCAGGTAACTGCAATACACTTAATTATCGGGACTCTCCAGAGAATGAACGTCTTTGG TGTTGAGAACAGGGATACGTTAACACACAAGGCCACAGGGTATTCAGCAAAGCTTTTGAAGAAACCTGATCAGTGCCGTG CGGTTTATGCATGCTCACATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGACGGAGAAAGAGTATTGCTTTGCCTT AAGCGTGCTTTGAGGATTGCAAATGCTGCTCAGCAAATGGCCAATGTTGCTAGGGGTAGCAGTGGTCCAGTGACGCTTTT TGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCACAGATCACCAGTGCTAATATCCAGGGGCTTA TAGAATTAATCACGAGCGAAATGCAGAGTGACACTGCATCAGCTCTTCCAGTTTCAGATGCATTCTTTGCCAGCACATTG AGGTACATCCAATTCCAAAAACAGAAGGGCGGTATACTGGGTGAGAAATATGATTCTATCAAGGTATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0004500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIAEGFEDEEKWLAEGIAGVQHNAFFLHRALDDNNLRDALKYAAMMLSELRTSRLSPHKYYELYMRAFDELRRLEIFFKD ETRHGVAIVDLYELVQHAGNILPRLYLLCTAGSVYLRCKDAPVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQISRDKLPD IGSEYEGGDSNGVMDAVEFVLQNFTEMNKLWVRLQHQFWPCRCYGVCGSCLIFGDPELRPSIGLSGLQGPGRIRDKKEKE RNELRDLVGKNLHVLSQIEGVDLEMYKDTVLPSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPA VDIKTVLSQLMDRLSNYAASSTEALPQFLQVEAFAKLSTAISRVIEAQVDMPIVGAIALHVSLLTFTLRVHPDQLDYVDQ VLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDVVTALTLSNYPRVMDHLDNETNKVMAMVIIQSIMKNNTCISNA DKVEVLFELIKGLITDLDGTAVDEVDEEDFNEEQNSVARLIHMLHNNDPEEMFKIICTVKKHIMNGGPKRLPFTVPSLIF SALRLIRQLQGQDGDVVGEEVPLTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEAANDCELEPVAYEFFTQAFVLYE EEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCL KRALRIANAAQQMANVARGSSGPVTLFVEILNKYIYYFEKGNPQITSANIQGLIELITSEMQSDTASALPVSDAFFASTL RYIQFQKQKGGILGEKYDSIKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11099:SF3
2 197 196 0.0 –
PANTHER
PTHR11099
2 197 196 0.0
IPR005378
PIRSF
PIRSF009375
3 822 820 1.6E-290
IPR005378
Pfam
PF03635
12 779 768 4.4E-274
IPR005378
SUPERFAMILY
SSF48371
108 649 542 4.46E-5
IPR016024
PANTHER
PTHR11099:SF3
228 822 595 0.0 –
PANTHER
PTHR11099
228 822 595 0.0
IPR005378
Gene3D
G3DSA:1.25.40.660
509 806 298 1.7E-107
IPR042491
Coils
Coil
821 822 2 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015031
Biological process Protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0030906
Cellular component Retromer, cargo-selective complex The trimeric subcomplex of the retromer, believed to be closely associated with the membrane. This trimeric complex is responsible for recognizing and binding to cargo molecules. The complex comprises three Vps proteins in both yeast and mammalian cells: Vps35p, Vps29p, and Vps26p in yeast, and VPS35, VPS29 and VPS26A or VPS26B in mammals.
Subterm of
Part of
GO:0042147
Biological process Retrograde transport, endosome to Golgi The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0004500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…