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GO:0042147

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Retrograde transport, endosome to Golgi
Full defintion The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
Subterm of

Relationships

The relationship of GO:0042147 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl
PMID
Retrograde transport from endosomes to the trans-Golgi network.Bonifacino JS, Rojas R
Nat Rev Mol Cell Biol. 2006 Aug; 7 (8): 568–79.PMID: 16936697

A subset of intracellular transmembrane proteins such as acid-hydrolase receptors, processing peptidases and SNAREs, as well as extracellular protein toxins such as Shiga toxin and ricin, undergoes 'retrograde' transport from endosomes to the trans-Golgi network. Here, we discuss recent studies that have begun to unravel the molecular machinery that is involved in this process. We also propose a central role for a 'tubular endosomal network' in sorting to recycling pathways that lead not only to the trans-Golgi network but also to different plasma-membrane domains and to specialized storage vesicles.

Associated Lotus transcripts 31

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0054399.1
– PREDICTED: vacuolar protein sorting-associated protein 54-like [Cicer arietinum] gi|502086597|ref|XP_004488267.1|
GO terms
1
Lj0g3v0054399.2
–
GO terms
1
Lj2g3v1670980.1
– PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356496620|ref|XP_003517164.1|
GO terms
3
Lj2g3v3188430.1
– PREDICTED: UPF0505 protein C16orf62-like [Glycine max] gi|356553555|ref|XP_003545120.1|
GO terms
3
Lj2g3v3188430.2
– PREDICTED: UPF0505 protein C16orf62-like [Glycine max] gi|356553555|ref|XP_003545120.1|
GO terms
3
Lj5g3v0240210.1
– PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356564375|ref|XP_003550430.1|
GO terms
3
Lj5g3v0240210.2
– PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356564375|ref|XP_003550430.1|
GO terms
3
Lj5g3v0240220.1
– PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356553365|ref|XP_003545027.1|
GO terms
3
Lj6g3v1104970.1
– PREDICTED: vacuolar protein sorting-associated protein 54-like [Glycine max] gi|356530523|ref|XP_003533830.1|
GO terms
1
LotjaGi1g1v0026000.1
– UPF0505 protein C16orf62; TAIR: AT1G50730.3 hypothetical protein; Swiss-Prot: sp|Q7Z3J2|CP062_HUMAN UPF0505 protein C16orf62; TrEMBL-Plants: tr|A0A0B2PS74|A0A0B2PS74_GLYSO UPF0505 protein C16orf62; Found in the gene: LotjaGi1g1v0026000
GO terms
3
LotjaGi2g1v0379200.1
– Vacuolar protein sorting-associated protein 35; TAIR: AT2G17790.1 vacuolar protein sorting-associated 35A-like protein; Swiss-Prot: sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A; TrEMBL-Plants: tr|A0A0L9TD44|A0A0L9TD44_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200
GO terms
3
LotjaGi2g1v0379200.2
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A151THW0|A0A151THW0_CAJCA Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200
GO terms
3
LotjaGi2g1v0379200.3
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A0L9TD44|A0A0L9TD44_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200
GO terms
3
LotjaGi2g1v0379200.4
– Vacuolar protein sorting-associated protein 35; TAIR: AT2G17790.1 vacuolar protein sorting-associated 35A-like protein; Swiss-Prot: sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A; TrEMBL-Plants: tr|A0A0L9TD44|A0A0L9TD44_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200
GO terms
3
LotjaGi3g1v0482400.1
– Coiled-coil domain-containing protein 132; TAIR: AT2G27900.1 coiled-coil protein; Swiss-Prot: sp|Q5ZKV9|VPS50_CHICK Syndetin; TrEMBL-Plants: tr|I1LRA9|I1LRA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0482400
GO terms
3
LotjaGi3g1v0482400.2
– Coiled-coil domain-containing protein 132; TAIR: AT2G27900.1 coiled-coil protein; Swiss-Prot: sp|Q5ZKV9|VPS50_CHICK Syndetin; TrEMBL-Plants: tr|I1LRA9|I1LRA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0482400
GO terms
3
LotjaGi3g1v0482400.3
– Coiled-coil domain-containing protein 132; TAIR: AT2G27900.1 coiled-coil protein; Swiss-Prot: sp|Q5ZKV9|VPS50_CHICK Syndetin; TrEMBL-Plants: tr|I1LRA9|I1LRA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0482400
GO terms
3
LotjaGi4g1v0376200.1
– Vacuolar protein sorting-associated protein 29; TAIR: AT3G47810.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q9STT2|VPS29_ARATH Vacuolar protein sorting-associated protein 29; TrEMBL-Plants: tr|I3SDN8|I3SDN8_LOTJA Vacuolar protein sorting-associated protein 29; Found in the gene: LotjaGi4g1v0376200
GO terms
2
LotjaGi4g1v0376200.2
– Vacuolar protein sorting-associated protein 29; TAIR: AT3G47810.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q9STT2|VPS29_ARATH Vacuolar protein sorting-associated protein 29; TrEMBL-Plants: tr|I3SDN8|I3SDN8_LOTJA Vacuolar protein sorting-associated protein 29; Found in the gene: LotjaGi4g1v0376200
GO terms
2
LotjaGi5g1v0004500.1
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|V7CTH6|V7CTH6_PHAVU Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500
GO terms
3
LotjaGi5g1v0004500.2
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|V7CTH6|V7CTH6_PHAVU Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500
GO terms
3
LotjaGi5g1v0004500.3
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|K7MP25|K7MP25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0004500
GO terms
3
LotjaGi5g1v0004500.4
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A0B2PY20|A0A0B2PY20_GLYSO Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500
GO terms
3
LotjaGi5g1v0004500.5
– Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.2 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A0L9V2B0|A0A0L9V2B0_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500
GO terms
3
LotjaGi6g1v0213600.1
– Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp|F4JT76|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHH5|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600
GO terms
2
LotjaGi6g1v0213600.2
– Vacuolar protein sorting-associated protein 54; TAIR: AT4G19490.1 VPS54; Swiss-Prot: sp|F4JT76|VPS54_ARATH Vacuolar protein sorting-associated protein 54, chloroplastic; TrEMBL-Plants: tr|A0A0S3RHH5|A0A0S3RHH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0213600
GO terms
2
LotjaGi6g1v0278000.1
– Vacuolar protein sorting-associated protein 53 like; TAIR: AT1G50500.4 Membrane trafficking VPS53 family protein; Swiss-Prot: sp|Q0WQF4|VP53A_ARATH Vacuolar protein sorting-associated protein 53 A; TrEMBL-Plants: tr|G7IFQ6|G7IFQ6_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi6g1v0278000
GO terms
2
LotjaGi6g1v0278000.2
– Vacuolar protein sorting-associated protein 53 like; TAIR: AT1G50500.4 Membrane trafficking VPS53 family protein; Swiss-Prot: sp|Q0WQF4|VP53A_ARATH Vacuolar protein sorting-associated protein 53 A; TrEMBL-Plants: tr|G7IFQ6|G7IFQ6_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi6g1v0278000
GO terms
2
LotjaGi6g1v0278000.3
– Vacuolar protein sorting-associated protein 53 like; TAIR: AT1G50500.4 Membrane trafficking VPS53 family protein; Swiss-Prot: sp|Q0WQF4|VP53A_ARATH Vacuolar protein sorting-associated protein 53 A; TrEMBL-Plants: tr|G7IFQ6|G7IFQ6_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi6g1v0278000
GO terms
2
LotjaGi6g1v0278000.4
– Vacuolar protein sorting-associated protein 53 like; TAIR: AT1G50500.4 Membrane trafficking VPS53 family protein; Swiss-Prot: sp|Q0WQF4|VP53A_ARATH Vacuolar protein sorting-associated protein 53 A; TrEMBL-Plants: tr|A0A0R0I8J4|A0A0R0I8J4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0278000
GO terms
2
LotjaGi6g1v0278000.5
– Vacuolar protein sorting-associated protein 53 like; TAIR: AT1G50500.4 Membrane trafficking VPS53 family protein; Swiss-Prot: sp|Q0WQF4|VP53A_ARATH Vacuolar protein sorting-associated protein 53 A; TrEMBL-Plants: tr|G7IFQ6|G7IFQ6_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi6g1v0278000
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0042147
Biological process Retrograde transport, endosome to Golgi 1 3.23