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Field | Value |
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Namespace | Cellular component |
Short description | Retromer, cargo-selective complex |
Full defintion | The trimeric subcomplex of the retromer, believed to be closely associated with the membrane. This trimeric complex is responsible for recognizing and binding to cargo molecules. The complex comprises three Vps proteins in both yeast and mammalian cells: Vps35p, Vps29p, and Vps26p in yeast, and VPS35, VPS29 and VPS26A or VPS26B in mammals. |
Subterm of |
The relationship of GO:0030906 with other GO terms.
Relationship type | GO terms |
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Is a | |
Regulates | n.a. |
Part of | |
Positively regulates | n.a. |
Negatively regulates | n.a. |
A force layout showing the ancestor tree for GO:0030906, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.
This table contains additional metadata associated with the GO entry's definition field.
Field | Value |
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GOC | bf |
PMID | A membrane coat complex essential for endosome-to-Golgi retrograde transport in yeast. J Cell Biol. 1998 Aug 10; 142 (3): 665–81.PMID: 9700157 We have recently characterized three yeast gene products (Vps35p, Vps29p, and Vps30p) as candidate components of the sorting machinery required for the endosome-to-Golgi retrieval of the vacuolar protein sorting receptor Vps10p (Seaman, M.N.J., E.G. Marcusson, J.-L. Cereghino, and S.D. Emr. 1997. J. Cell Biol. 137:79-92). By genetic and biochemical means we now show that Vps35p and Vps29p interact and form part of a multimeric membrane-associated complex that also contains Vps26p, Vps17p, and Vps5p. This complex, designated here as the retromer complex, assembles from two distinct subcomplexes comprising (a) Vps35p, Vps29p, and Vps26p; and (b) Vps5p and Vps17p. Density gradient fractionation of Golgi/endosomal/vesicular membranes reveals that Vps35p cofractionates with Vps5p/Vps17p in a vesicle-enriched dense membrane fraction. Furthermore, gel filtration analysis indicates that Vps35p and Vps5p are present on a population of vesicles and tubules slightly larger than COPI/coatomer-coated vesicles. We also show by immunogold EM that Vps5p is localized to discrete regions at the rims of the prevacuolar endosome where vesicles appear to be budding. Size fractionation of cytosolic and recombinant Vps5p reveals that Vps5p can self-assemble in vitro, suggesting that Vps5p may provide the mechanical impetus to drive vesicle formation. Based on these findings we propose a model in which Vps35p/Vps29p/Vps26p function to select cargo for retrieval, and Vps5p/Vps17p assemble onto the membrane to promote vesicle formation. Conservation of the yeast retromer complex components in higher eukaryotes suggests an important general role for this complex in endosome-to-Golgi retrieval. |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Transcript | Name | Description | GO terms | GO count |
---|---|---|---|---|
– | PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356496620|ref|XP_003517164.1| | 3 | ||
– | PREDICTED: UPF0505 protein C16orf62-like [Glycine max] gi|356553555|ref|XP_003545120.1| | 3 | ||
– | PREDICTED: UPF0505 protein C16orf62-like [Glycine max] gi|356553555|ref|XP_003545120.1| | 3 | ||
– | PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356564375|ref|XP_003550430.1| | 3 | ||
– | PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356564375|ref|XP_003550430.1| | 3 | ||
– | PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] gi|356553365|ref|XP_003545027.1| | 3 | ||
– | UPF0505 protein C16orf62; TAIR: AT1G50730.3 hypothetical protein; Swiss-Prot: sp|Q7Z3J2|CP062_HUMAN UPF0505 protein C16orf62; TrEMBL-Plants: tr|A0A0B2PS74|A0A0B2PS74_GLYSO UPF0505 protein C16orf62; Found in the gene: LotjaGi1g1v0026000 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT2G17790.1 vacuolar protein sorting-associated 35A-like protein; Swiss-Prot: sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A; TrEMBL-Plants: tr|A0A0L9TD44|A0A0L9TD44_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A151THW0|A0A151THW0_CAJCA Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A0L9TD44|A0A0L9TD44_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT2G17790.1 vacuolar protein sorting-associated 35A-like protein; Swiss-Prot: sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A; TrEMBL-Plants: tr|A0A0L9TD44|A0A0L9TD44_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi2g1v0379200 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|V7CTH6|V7CTH6_PHAVU Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|V7CTH6|V7CTH6_PHAVU Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|K7MP25|K7MP25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0004500 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.1 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A0B2PY20|A0A0B2PY20_GLYSO Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500 | 3 | ||
– | Vacuolar protein sorting-associated protein 35; TAIR: AT1G75850.2 VPS35 homolog B; Swiss-Prot: sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B; TrEMBL-Plants: tr|A0A0L9V2B0|A0A0L9V2B0_PHAAN Vacuolar protein sorting-associated protein 35; Found in the gene: LotjaGi5g1v0004500 | 3 |
A list of co-occurring GO terms within the L. japonicus gene space:
GO term | Namespace | Name | Observations | Saturation (%) |
---|---|---|---|---|
Biological process | Retrograde transport, endosome to Golgi | 1 | 6.25 |