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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0027300 |
| Transcript ID | LotjaGi5g1v0027300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-ribonuclease binding protein; TAIR: AT1G45976.1 S-ribonuclease binding protein 1; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|G7I3I5|G7I3I5_MEDTR SBP (S-ribonuclease-binding protein) family protein; Found in the gene: LotjaGi5g1v0027300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4554393..4557225) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGTGGAAATTACAAGAAAGTTCTGTACACAGATCCTTATGGTGTTCCCATTTCTCTTGTTGTTCATCCATGTCCATG GCTTTCCCTCAGGACCAGTTTCAACGTCACTACCAAACCCAACAACACCACCATCCACAAACCAAGCCTTTCAGGTAACA ACAATTTACCTTCCCAGTATTTCTTCAAATCCCCAAATTTCCCCAATCAATTTCCATTCTTTCTACCTTTCAATTGACCT AACTTTTTCCCCCTTTTTTGCAATTCAATCTTCTCATTTGATTCTATATCTTTCTCAATTGTTGTTGTTTTTGTCAGGGA TTTGCTAACAATTGATGGTCAGATGCAGCAGCAGCAGCAGATAGCATTTTACAACCCTAGTGATCTACAAGATCAGACTC ATCATCATCATCCACCCTACAATCCTCCCTGTATGTAAAGCCTTCATCTTTGGCTACCCTTTGTTCAATTTGTTTGTTTC TGCAATCTGCACCTTTTAATTTTAGCTACAGCTGTTTAATCTCCTGAAAATTTGAGGAAATTGCCCCAGCTAGGTTTTTT AGTCACACCCCTTTTGGTCATTTTGAATCCAAGTTATTATATGATGATTAAACCACTGGAAAGTTCAAATTTTTATGTAT TTTCTGTGTTCTGGCTCAACAATTTTGTGGGGTTGACATGGTTATGATTTTAAGCTAAGTCCTGGGTTTTTTTGTGTGTT GTGATTTTTGTCTTTGTTTAGTTCATGTTGTTGGGTTTGCTCCGGGTCCTGTGCTTCCTGCTGATGGCAGTGATGGTGGC CTTGACTTGCAATGGAATTATGGTTTGGAACCAGAGAGGAAGAGAATAAAAGAACAGGATTTTTTGGAGAACAATTCTCA GATAACTTCGGTTGATTTCCTGCAACCTCGATCTGTTTCAACTGGGTTGGGATTGTCACTTGATAATACCCGCCTGGCTT CCACTGGGGACTCGGCTTTGTTGTCACTTATCGGTGATGACCTCGATCGCGAGTTACAGCAGCAGGATCTGGAGATGGAT AGATTTCTCAAAGTGCAGGTTAGCTCAAGTTTTGATTTCTTGCCAGTTCAACTCTATTTGTTGTCAGTTTAACTATGTTT GTTGTCCTGAAAGATAAAGTCTTCCATGAATAGATCACATTATTTATACACATTTGAATGTATCTTTTATTGTTGGTCGA TAAGGGATCTGTTAAGTGTTTCTTGCATGTTCTAAAAAAAAGTAAAGAAAATTGTTACATCGGCAACTTGTTGCGTAATA TAAATGCTTTTTGTATTTCTGTTAAGCAATGATTTTGATATTTTCTGTACGTGATGCCACTTGTCTGAAGATAAATAGAG TGAAAATTTCATATAACCTTTTTTGTGGTTATTTTCGTCCATTTTGAAATGTCGGGTACTTGTGAAATATTTTCTTAAAC CTGGCGCACTTAAGTTGGGTGTGCTGGACTAATCCTGCAATTAATTAAGACATAATTTTAGTAACTAGTAAGTAGTAACT GATTAGTTATTCACTACCAGAAATAATGATTTGATTTGCTTAGTGCACCCAACCTAGATGCTTATGCAATTCTTCCCATC TTATTGATACTGTATGCACCCAACTTGTGTGCTTCTGATCAAACTTGATCATCATATTTGTCTGCAACAGCATTGTCTAT AAACTGCTTTTCTTTTAGTAATTGCTTCACGTGCCTTCAAAGTTCAAATGCCTAACTGTGATGCATTAGAAATTGTATTG GTTATAGCCTGATTTAACATCTGTGTAGATGGGAAAACAACTTTCTCTGATGTGAACTTGCAGCACTTACTAGTCTTCTC CTTTCTAATAGGGTGAACGATTGCGACAATCAGTACTCGAGAAGGTTCAGGCATCTCAACTTCAGAGTCTTTCAATCATT GAAGACAAAGTCCTGCAGAAACTCCGTGACAAAGAAGCTGAGGTAGAAAACATCAATAAGAGGAATATGGAACTTGAAGA TCGAATGGAGCAGCTAGCTGTTGAAGCAGGTGCCTGGCAGCAGCGAGCCAGGTACAACGAGAACATGATTGCTGCTCTCA AATATAACCTTCAACAAGCATATGTCCAAAGCAGAGATAGTAAAGAAGGATGCGGCGACAGTGAGGTAGATGATACGGCT TCCTGCTGCAATGGCCGCACCCTCGATTTTCATCTGCTCTCCAAGGGAAATTCCGACATGAAAGAGATGATGACATGTAA GGCTTGCAGGGTCAATGAAGTGACCATGGTTCTATTACCTTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGC TTAGCTTTTGTCCTCTATGCCAATCCTCTAAATTTATCGGCATGGAGGTCTTCATGTAACTGGATATTTTACTTTGACCA CTTGAAGTCTCTAATATTTATATTAGAAGTTATGTAAGTCTTTTTCTCTTGTTGCTGATCATAGTTTTATTCAACCTCTG TAAACTTGTATTATCCCTAAGGACCATGGCACCTTATTTAGAACAGTAGTAAATTTTGGAAAGATGTTTATTAAACTGAC TTATGCATGTGGCTGTGACATCATGTGACTGCAAGAAATAAGTGCTGGAAATTTCAATGTTTTGGGGTTGGATGTTAAAT CTGTTATTGTGATTTAATTTTTATTAATGGAGGTTTTTCATGCACTAGGGCTACTTTCTAACCCCTCATACATGTGGTAT CAAAACTATGTTTTGGCATTGACAAAAACAAAACTTGGAAAAGTATTTGGAGAATTGAGATGTTGGTTGGTGTTCCGGTG TCTAATTCATAGAAGACCTGTTCTTAGTTGAAG
CDS sequence (LotjaGi5g1v0027300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATGGCTTTCCCTCAGGACCAGTTTCAACGTCACTACCAAACCCAACAACACCACCATCCACAAACCAAGCCTTT CAGGGATTTGCTAACAATTGATGGTCAGATGCAGCAGCAGCAGCAGATAGCATTTTACAACCCTAGTGATCTACAAGATC AGACTCATCATCATCATCCACCCTACAATCCTCCCTTTCATGTTGTTGGGTTTGCTCCGGGTCCTGTGCTTCCTGCTGAT GGCAGTGATGGTGGCCTTGACTTGCAATGGAATTATGGTTTGGAACCAGAGAGGAAGAGAATAAAAGAACAGGATTTTTT GGAGAACAATTCTCAGATAACTTCGGTTGATTTCCTGCAACCTCGATCTGTTTCAACTGGGTTGGGATTGTCACTTGATA ATACCCGCCTGGCTTCCACTGGGGACTCGGCTTTGTTGTCACTTATCGGTGATGACCTCGATCGCGAGTTACAGCAGCAG GATCTGGAGATGGATAGATTTCTCAAAGTGCAGGGTGAACGATTGCGACAATCAGTACTCGAGAAGGTTCAGGCATCTCA ACTTCAGAGTCTTTCAATCATTGAAGACAAAGTCCTGCAGAAACTCCGTGACAAAGAAGCTGAGGTAGAAAACATCAATA AGAGGAATATGGAACTTGAAGATCGAATGGAGCAGCTAGCTGTTGAAGCAGGTGCCTGGCAGCAGCGAGCCAGGTACAAC GAGAACATGATTGCTGCTCTCAAATATAACCTTCAACAAGCATATGTCCAAAGCAGAGATAGTAAAGAAGGATGCGGCGA CAGTGAGGTAGATGATACGGCTTCCTGCTGCAATGGCCGCACCCTCGATTTTCATCTGCTCTCCAAGGGAAATTCCGACA TGAAAGAGATGATGACATGTAAGGCTTGCAGGGTCAATGAAGTGACCATGGTTCTATTACCTTGTAAGCATCTTTGCCTC TGTAAAGATTGTGAAAGTAAGCTTAGCTTTTGTCCTCTATGCCAATCCTCTAAATTTATCGGCATGGAGGTCTTCATGTA A
Protein sequence (LotjaGi5g1v0027300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMAFPQDQFQRHYQTQQHHHPQTKPFRDLLTIDGQMQQQQQIAFYNPSDLQDQTHHHHPPYNPPFHVVGFAPGPVLPAD GSDGGLDLQWNYGLEPERKRIKEQDFLENNSQITSVDFLQPRSVSTGLGLSLDNTRLASTGDSALLSLIGDDLDRELQQQ DLEMDRFLKVQGERLRQSVLEKVQASQLQSLSIIEDKVLQKLRDKEAEVENINKRNMELEDRMEQLAVEAGAWQQRARYN ENMIAALKYNLQQAYVQSRDSKEGCGDSEVDDTASCCNGRTLDFHLLSKGNSDMKEMMTCKACRVNEVTMVLLPCKHLCL CKDCESKLSFCPLCQSSKFIGMEVFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PIRSF | 9 | 346 | 338 | 1.4E-92 | – | |
| PANTHER | 16 | 346 | 331 | 1.6E-164 | – | |
| PANTHER | 16 | 346 | 331 | 1.6E-164 | ||
| Coils | 195 | 236 | 42 | - | – | |
| Gene3D | 282 | 346 | 65 | 1.7E-11 | ||
| Pfam | 298 | 336 | 39 | 2.8E-8 | – | |
| ProSiteProfiles | 300 | 335 | 36 | 9.716 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0027300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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