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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017066
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.198s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0173859.1
n.a. Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|357437787|ref|XP_003589169.1| chr0 83762224 83764788 -
2 domain predictions
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Lj0g3v0246119.1
n.a. S-RNase binding protein [Medicago truncatula] gi|357451829|ref|XP_003596191.1| chr0 127482521 127483721 +
2 domain predictions
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Lj1g3v3330560.1
n.a. Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|357467533|ref|XP_003604051.1| chr1 38167635 38169204 -
2 domain predictions
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Lj2g3v1414950.1
n.a. PREDICTED: RING finger protein B-like isoform X1 [Cicer arietinum] gi|502092919|ref|XP_004489827.1| chr2 22222541 22227471 -
2 domain predictions
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Lj2g3v1988750.1
n.a. SBP family protein [Theobroma cacao] gi|508776865|gb|EOY24121.1| chr2 29561050 29563161 -
2 domain predictions
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Lj3g3v0965780.1
n.a. S-RNase binding protein [Medicago truncatula] gi|357451829|ref|XP_003596191.1| chr3 12810546 12811907 +
2 domain predictions
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Lj3g3v3420100.1
n.a. Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|357467533|ref|XP_003604051.1| chr3 42029009 42030510 -
2 domain predictions
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Lj6g3v1692670.1
n.a. Baculoviral IAP repeat-containing protein [Medicago truncatula] gi|357448357|ref|XP_003594454.1| chr6 18898259 18900519 -
2 domain predictions
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LotjaGi1g1v0558500.1
n.a. SBP (S-ribonuclease binding protein) family protein; TAIR: AT4G35070.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A151SFE1|A0A151SFE1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0558500 LjG1.1_chr1 109069623 109071458 -
2 domain predictions
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LotjaGi2g1v0321500.1
n.a. SBP (S-ribonuclease binding protein) family protein; TAIR: AT1G10650.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A1J7GSL1|A0A1J7GSL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321500 LjG1.1_chr2 79627360 79632958 -
2 domain predictions
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LotjaGi2g1v0321500.2
n.a. SBP (S-ribonuclease binding protein) family protein; TAIR: AT1G10650.2 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A1J7GSL1|A0A1J7GSL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321500 LjG1.1_chr2 79628678 79630318 -
2 domain predictions
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LotjaGi2g1v0321500.3
n.a. SBP (S-ribonuclease binding protein) family protein; TAIR: AT1G10650.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A1J7GSL1|A0A1J7GSL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321500 LjG1.1_chr2 79628678 79630878 -
2 domain predictions
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LotjaGi2g1v0417700.1
n.a. SBP (S-ribonuclease-binding protein) family protein; TAIR: AT1G32740.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|O81851|BOI_ARATH E3 ubiquitin-protein ligase BOI; TrEMBL-Plants: tr|V7CEM8|V7CEM8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417700 LjG1.1_chr2 91619100 91621926 -
2 domain predictions
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LotjaGi3g1v0035100.1
n.a. SBP (S-ribonuclease-binding protein) family protein, putative; TAIR: AT3G12920.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A0S3SAB9|A0A0S3SAB9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0035100 LjG1.1_chr3 3731545 3733885 +
2 domain predictions
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LotjaGi3g1v0139500.1
n.a. SBP (S-ribonuclease-binding protein) family protein, putative; TAIR: AT3G12920.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|G7IH38|G7IH38_MEDTR SBP (S-ribonuclease-binding protein) family protein, putative; Found in the gene: LotjaGi3g1v0139500 LjG1.1_chr3 18442987 18446561 +
2 domain predictions
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LotjaGi3g1v0520100.1
n.a. SBP (S-ribonuclease binding protein) family protein; TAIR: AT4G35070.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A1J7GYI8|A0A1J7GYI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0520100 LjG1.1_chr3 93647179 93648423 -
2 domain predictions
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LotjaGi4g1v0085300.1
n.a. SBP (S-ribonuclease-binding protein) family protein; TAIR: AT5G45100.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|A0A0S3R2J4|A0A0S3R2J4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0085300 LjG1.1_chr4 11253155 11254506 +
2 domain predictions
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LotjaGi4g1v0085300.2
n.a. SBP (S-ribonuclease-binding protein) family protein; TAIR: AT5G45100.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|A0A0S3R2J4|A0A0S3R2J4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0085300 LjG1.1_chr4 11253163 11254578 +
2 domain predictions
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LotjaGi4g1v0192100.1
n.a. SBP (S-ribonuclease-binding protein) family protein; TAIR: AT1G32740.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A151S9L5|A0A151S9L5_CAJCA Baculoviral IAP repeat-containing protein 2; Found in the gene: LotjaGi4g1v0192100 LjG1.1_chr4 44069277 44073612 -
2 domain predictions
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LotjaGi5g1v0027300.1
n.a. S-ribonuclease binding protein; TAIR: AT1G45976.1 S-ribonuclease binding protein 1; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|G7I3I5|G7I3I5_MEDTR SBP (S-ribonuclease-binding protein) family protein; Found in the gene: LotjaGi5g1v0027300 LjG1.1_chr5 4554393 4557225 +
2 domain predictions
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LotjaGi5g1v0027300.2
n.a. S-ribonuclease binding protein; TAIR: AT1G45976.1 S-ribonuclease binding protein 1; Swiss-Prot: sp|Q9LDD1|BRG3_ARATH Probable BOI-related E3 ubiquitin-protein ligase 3; TrEMBL-Plants: tr|A0A0L9V232|A0A0L9V232_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0027300 LjG1.1_chr5 4554834 4556771 +
2 domain predictions
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LotjaGi6g1v0276300.1
n.a. SBP (S-ribonuclease-binding protein) family protein; TAIR: AT5G45100.1 SBP (S-ribonuclease binding protein) family protein; Swiss-Prot: sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1; TrEMBL-Plants: tr|G7IFV4|G7IFV4_MEDTR SBP (S-ribonuclease-binding protein) family protein; Found in the gene: LotjaGi6g1v0276300 LjG1.1_chr6 59321889 59324628 -
2 domain predictions
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