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LotjaGi5g1v0029200.2

Overview

Field Value
Gene ID LotjaGi5g1v0029200
Transcript ID LotjaGi5g1v0029200.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Methionine--tRNA ligase; TAIR: AT3G55400.1 methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS); Swiss-Prot: sp|Q9M2T9|SYMM_ARATH Methionine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151U822|A0A151U822_CAJCA Methionyl-tRNA synthetase; Found in the gene: LotjaGi5g1v0029200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:4800096..4802711) extracted from Lotus japonicus Gifu genome v1.2.

ATGAAGATGGGAAAGTCGCTAGGGAATACGCTTGAACCAATTGATTTAGTAAATAAATTCGGGACAGATGCAGTAAGGTA CTTCTTCCTCCGAGAGGTGGAATTTGGCAATGATGGGGACTATTCGGAGGAACGCTTCATCAATATCGTAAATGCACATC TTGCCAACACAATTGGTACTTTAAACCTTGCTGTCATTCCTTGTAATATTTCTTTTTATTTTCTAATTTTATTTTGATTC TCATGCTTAGTATGATGTTAGAGGTCTCAGACCTTTGGCCCATATTGAGGAGATGGCACTTCTCGGGGAATCCTTATTAT CTATGTTCAGTTTTTCTTTGTTCTCCATTATTCAGTAATACAAATTTCATTTTTAGATTCTGTGTTTCGTTTTCTTACTG AGACTGTTTCACATGATATATATTTTCTTTACTATTATGGCAGGAAATCTTCTTAATCGTACACTAGGACTTCTAAAGAA GAACTGCCAATCAACTCTGGTGGTGGATTCTACTGCAGCTGCAGAAGGAAATGCTTTCAAGGACAATGTAGAGAGCCTGG TAATATATATAGCAAAGTATTTCTATAATCCTCACATTATATATTAACAGTTTTGCTAACATCAGCCCTTGGACTGAGAA TAAGAATCATAATTGAGAAGTTTTTATTGGGAAATGAAGCATTGATTGCACTTATGTATAAATGCAGTAAAAAAAATCTT TCCAATAAAAACTTTTCAATTTTTGTACTTTATCCTCAGTTCTAACTTCTAAGGGTTAAGATTAACAAACCGTATTTTTG AAGTATGCTAATCCTGCTGAGAAAGAAGAAAATGACAGCACGAGGGAATCCATGTGACCCATTTACACAGTGAAGGATAA TATATGTACTTAGAGTCATGAATACAATAACTTACCGTTACCTAATTATTGTAATTGCAATAATATACCATTTGTAATCA ACCTATATTTACTCTGTTTACATTATCTCTGATAAATTCAATGACTGGGAACTTGTTCTGGCACATTTGTTTGCCCAGTG ATTAACCTGGTGTTGAAGGCTCTGCTTGGTTTCCTGGCAGCTTCCATTGTAATTTATAATCATTGTTCTTAATGCTAGGA ATTTAAAATTGAAAATATACTCTTTTCACATTTGGAGAAGACATCTTTGGATGGCAGAATTGATTTGAGGATAGATGCTA AGTATTACCTCTATTTTATCCTGTATTCTAGGTATTTGGGGATAAAATAATTCACCAGCAACTGGATTAAATAATCTAGA TAGACTAAAAGGAGGAAAAATATGGGATCAGACTTTGATGGATTGTTAGAGGTTAGATACAACTCTATATCTTAGGGCCC TGCCCAGAGCGTTGTATTCAGTATTCATGTTATTATATTTGGTTATATTCCTCTGACCAAAATGTAATATTTTTTTGTTT ATGGGGTTAACATTAGAACTGTTGTTTTATCTTCTATTTTGAAATATAAACAGGTTGACCCTTAAGTTGTGTTATATTTT GTGGTTCTATTTCTATAGTTGTGCATATTTTAAATCCCTTGTTCATAAGTTGTGGTAGTTGCCTAAGATCCAAAGGTTGA CCAACGTTTGCTTTTGTAGGTTGATAAAGCTCGTATTCACTATGAAAATCTCTCCCTCTCATCAGCTTGTGAGGCTGTTA TGGAGATTGGTAATGTTGGCAATTCCTACATGGATGAACGCGCACCATGGTCTCTCTTTAAGCAAGGGGGTGCTGCCTCT GAAGCAGCTGCTAAGGTAATTTGCTTGAATGTAGTATCTCACTCATCCATCTTGAATAACTTATGGGAGTAGTAGAAGTT TAAACTTGATATCCTGTTAGTATAAAACTTCATATGCGATCAGTAAACAAAAAAGTTGCATCATTAGAATAATTAAGATA TTTCATTTGTCTTTTGGGATATTTGTTTTTAGCTCTATTTTGAATTCTTTACCTGACAATGACATTGTATCAAATTAAAT CCAAATATACAACTGTTTCTTTTCTTACAGAGTGAAAATAATCGATTATCTTTGCATTAGTTGTCATCTCCAATTGAACT TAGTTTCTTCTTCTTAACCGAATATAACAAGTTTAATCATGTCATAGTTTTGTTTCTGTTGAATATAAGTATATGCCTAA GCAAGATTTCTCACTTGTAATGTTGGAGCAGGACCTTGTTATTATATTAGAGACCGTGAGGATTATCGCAATTGCACTAT TTCCCGTTACCCCGAGCTTGAGTTGGAGAATATATGCACAGCTTGGCTATTCCAGGGACCAATTTGATGCAGCAACCTGG GTCTCTCCTCTCTCTCTCTGTCTCACACTCACACAGACACACACACACACACTCAAACACACTACAGTTTCTTGGTTTTA AACTATTCTCTTCTGCTTCTGATTTAAGTTTGATTTGCATTGTAGAGTGACACCACGTGGGGTGGTCTTAAGGGTGGCCA GGTCATGGCTCAGCCTAAACCAATTTTTGCTAGGATTGAAAACCAAACTGAAGTGGAAGACAAAGGGGTTGCAGTGGGGA AGAGTGTTAAAAGTAAAGGGAAGTTGAAACAAGCTCAAGAAGTCGCTGGAGCTTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0029200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGATGGGAAAGTCGCTAGGGAATACGCTTGAACCAATTGATTTAGTAAATAAATTCGGGACAGATGCAGTAAGGTA CTTCTTCCTCCGAGAGGTGGAATTTGGCAATGATGGGGACTATTCGGAGGAACGCTTCATCAATATCGTAAATGCACATC TTGCCAACACAATTGGAAATCTTCTTAATCGTACACTAGGACTTCTAAAGAAGAACTGCCAATCAACTCTGGTGGTGGAT TCTACTGCAGCTGCAGAAGGAAATGCTTTCAAGGACAATGTAGAGAGCCTGGTTGATAAAGCTCGTATTCACTATGAAAA TCTCTCCCTCTCATCAGCTTGTGAGGCTGTTATGGAGATTGGTAATGTTGGCAATTCCTACATGGATGAACGCGCACCAT GGTCTCTCTTTAAGCAAGGGGGTGCTGCCTCTGAAGCAGCTGCTAAGAGTGACACCACGTGGGGTGGTCTTAAGGGTGGC CAGGTCATGGCTCAGCCTAAACCAATTTTTGCTAGGATTGAAAACCAAACTGAAGTGGAAGACAAAGGGGTTGCAGTGGG GAAGAGTGTTAAAAGTAAAGGGAAGTTGAAACAAGCTCAAGAAGTCGCTGGAGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0029200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKMGKSLGNTLEPIDLVNKFGTDAVRYFFLREVEFGNDGDYSEERFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLVVD STAAAEGNAFKDNVESLVDKARIHYENLSLSSACEAVMEIGNVGNSYMDERAPWSLFKQGGAASEAAAKSDTTWGGLKGG QVMAQPKPIFARIENQTEVEDKGVAVGKSVKSKGKLKQAQEVAGA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43326
1 149 149 1.2E-99 –
PANTHER
PTHR43326:SF4
1 149 149 1.2E-99 –
Gene3D
G3DSA:3.40.50.620
1 41 41 2.3E-12
IPR014729
SUPERFAMILY
SSF52374
2 52 51 1.6E-13 –
Pfam
PF09334
2 66 65 2.2E-13
IPR015413
Gene3D
G3DSA:1.10.730.10
42 150 109 1.1E-24 –
SUPERFAMILY
SSF47323
54 173 120 7.85E-21
IPR009080
PANTHER
PTHR43326
150 204 55 1.2E-99 –
PANTHER
PTHR43326:SF4
150 204 55 1.2E-99 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0029200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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