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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0108300 |
| Transcript ID | LotjaGi5g1v0108300.5 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0R0L5D6|A0A0R0L5D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20633433..20640082) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCACTTTCCCTTTTCTCTCCATTTCCTGCGTTTCTCCTCTTCTCACCCACCACCGTATCCCAATGTTGGGTGCTTT TCAGAACCTCGAATTTCAGCCAAAGTTTCAATCTGTAGCCTCTGGAGACTGCAGAGGAAGTGGTTTCGCATCTGGGTCTT GCTGCAATGCTCCGAGGCGATGCAATATGAGACAGAAACCTCGTAGAAGAAAAGGGGTGTTGGTTGTTAGTTCAAAGTCG ACGCTGAGTGTGGAGGAGCAAGTGGCGGAGAGAGTGAACGGTGGTGGAGGGTTTGATGCAATTGTTATAGGGTCTGGGAT TGGAGGGTTGGTTGCAGGGACTCAGCTTGCAGTGAAGGGTGCTAGAGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTG GAAGCTCTGGGTTTTACCAGAGGGATGGGTATACTTTTGATGTGGGTTCTTCTGTCATGTTTGGTTTCAGTGATAAGGTT ATTTTTTTTTCTTTTCAATTTAATGTTATTGGGTGAATGTGATTTGTTTTATGGTTTACTGCAATGAATTCATGATGTTA ATTCTACAAGTAATAAATTAGTGTAAAATGAATGGGGCTGAGCTCACTGAGCTGAATGTACAGAAGAGGAACTTGAATGC TGTTTCTTCCTGATATACTTAGAGCCCTTGGATACCCGTTAGAAAGTATGAAACCGGGAAAATAACACATCATGGGGCAC TTTTTGTTGAAGTAACAACTTGCAAATTATATATACAGTATACACTTCTTTTGAATTTTAATACTTAATGTAGAAGTACA CAATTCTGTGTTGTATCTGTGTCACTATACTTAGCTAGTGGCACTGAACAAAATGACCGCATCTAATTCACTCTCTTAAT TAGCGTACTAAAATTAAAGAAAGTCCATATGAGAAGTAAATAAGGAATCAAGAGCATAAGGGTAAATGTTTTTTCAAAGA AATTCTCATGACCAAGCTTTTTATGTAAAGCTTGGTTTCTGATCATTATGCTCCGAATAGCTATGGCTTGCTAATTTATG AATAATGCCTAAGCTTATAGTTGCTTTGTGAACTAAATTCTCAGTGGTATACTTCCAAGTATTACAAACTCCATTTACCT TACATTTGTGCAGGGTAATCTCAATTTGATAACACAAGCTCTGGAAGCAGTTGGTTGTAAGATGCAGGTGGTACCGGATC CAACAACTGTTCATTTCCATCTACCAAACAACCTCTCTGTTCGAGTGCACAGAGAATATGACAAATTCATCGAAGAGTTG ACCTGTTATTTTCCCCATGAAAAGGAGGGTATCCTCAAATTCTATGGTGAATGCTGGAAGGTTTGTCTCAATTGAGGTGA CTGCAGCCCCCTTAAGGCATTTTTGCCTCAACTTGTAATTCATTTTGTTAAGAGCTTACCTTTGTTTTGGCTAGATTTTC AATGCCCTGAATTCGTTGGAATTGAAGTCACTAGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCGCTTGA ATGCTTGACACTAGGTACTTTCATTTTATTTATTTGTTTTAAATGAGAGGCTGCGAATTTAAAATTCTCACCCTATGCTT CCCTCAATACATCTTTTTTGAATCTTTAGTTAATCTCATTGTTAAAAGATACTCCTCCTATCATTCAAAATAATAAGAAG ATATCACTGGACTACATGTTCTTTACAATTATCTGCTTAAATTTTCGCAAAACTAGTTCACTCAAAAATATTTATCCTAC TATGAAGATCAGGACAAGATTTGACTTTGTGATGCTTATGGAAATTCTCATGTGATTTATTTTTCATTTTTTAGAATAGA AGTGCTATAGACCCGGGGAATTATATCTAAGAAATGCATTTTTTTTTTTACAATGCCAAGCTGGGATAATTTGATAAACC TTCAAAAAGTGTATTTTCATCAATATGAGCATCTGATGAACTTCTGTGTTAAACAAAGCAAAGGGTGTTACTGACCATGA TTTTTCTTGGTATATTATGTCTGTACATTCATGTGGAAGACTACTGAATAATAACAGTATATAAGTGATCAGGTTGTCCT TGACTGTGCAGGAACCATCAATGTTTTGATATGAATTTTAGCCATTCGCTTTTCTGATGATGTTATTATATGGCAGCCTA TTATTTGCCTCAAAATGCTGGTGCCATAGCTCGGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGG TAGATATAACCACTTATTTAATTCAGTTAGAACATAAGTTTCATTATTAAGGAAAATGTTAAATGTCGTGAAGATTTATT CTCTTCACACGAAATGTGTCACGTATGATAGTAACTATGTCAAAGACATTGATTCTAATGGGTCCCACGAAAGATGTTCG TGGGTGATTGTCTGGTCCCATAAGATAAATTTAGGCTAAAACACACATTGCCGCATCATTTGTACCTTTCTGTTAAAAGC TGTTTCCATGTGGAATAGCACTACTTTTTTTGAAAGCAGAAATAGCACTACTTATCTACTAATTCATTAATTATCCAAAT TTTTGCTTCATTATTGGAAACTTTAATCCATTAAAAACTCTGGTATTGCAGTGTTTTATAGTGAGCACCGTCAATGCTTT GCAGACTCCAATGATCAATGCTGCCATGGTATAATGGTTACTTGCTTATTTCATCTTTGTCTTAGAGGTTTCCGTTTTTA GCATCATTATTTGACTCTATTTTTGCCACCAGGTTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGAGGT GTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGCTTAGCTGATCAGGGTAGTGAGATTCTTTACAAGGCAAATGTCACTAG TGTTATAATTGAGCAGGGCAAAGCTGTAAGTGAGATATGAGAATATACATAAGCATGACATATTTAGAAAAATGCATCTG TTTCTCAAGAATCGTGGTATACATTTTGCAGGTAGGAGTGAGGCTTTCAGATGGCAGGGAATTCTTTGCTAAAACCATAA TATCAAATGCTACTAGATGGGATACATTTGGTTGGTTTCGAAAATAGATTTTTAAGATTATTTTTTGTTTTGTTCATATT GGAATGATTATCTTCTTGTCTTTCTCTTTCTATTAGAAAGGCTCATGAGTTGTTTAGATTCGGGTTTGAGGTAAAATATA CTTCAAGTCAATTATGATCCAAACCTAACCAATCCAATTAAGATTAAGCTAGTTTGGTTCAGGTCATTGGATTAGGGTAC AAAAATTAAATCATAAATTTGTTAGGTATTTATCTGCATATATACCTTTATATATAAAATTTTAAACTTAATGTTACTAC CAGTAAAATGTGGTTCTTTATTTTTTAATAGTGTTATATTACTCAAATCAATTTTAAATGTTAAAATCACTTCTACTTAA AAGTTAACCATAAGTAACTCATTAACTTTTTAACCTAAAATGTGAAAATAAAATTGGATCGTAAATATGGCCAAAGACGC TTGATAATCCTAGATCGCAAGGTAAACATAATTTTTAAATAAGATAAAAATAAGAAACGAGATAAATATCAAACTTCAAA AGAACAAATATAAAAAATTAAATATGACAAATATTAATTGGTGATCAGGTTAGTTCGAGTTGGAAAAAATAGTTCTATGT GTTCATTTGTTAACTAAAGTAACTATCGGGTTCAATCCAATCTGATGAACACTCTTACTTATGCGTTCGTTTGTTCTTAA TCAGCTAAACCCAAATTGCTCATTCTTACATTGTAGGGAAGTTACTAAAGGGAGAGACACTTCCGAAGGAGGAAGAGAAC TTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAATCAGAGGTTTTGCCACCAGATAC AGATTGTCACCATTTTATGCTTGAGGTAGTTGGAAGTTTCCTGACCTTAGATCTCTTAATCACCTTAATGAATTTGGATG AATAATCTTCTACACGTATTTTGTTGGAACTTGTCCAGAATAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTT TTAAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTCTTCAAT GGACGACTGGAAGGTAGGAAATACTGATTTGTTAGTTCTGATAAATAAGTTGAAACTTCCCCATGTGTGCTTCTGACTTT AGAAACTACCTTTTTTGTTCTTCCCTCCTGTTTTATCCATTTGCTGACTCAAATATCAAATGTCTGTTTTCTGTACCAGG GTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCTGATGAAATCATCAGCAGATTAGAGAAGAAATTGTTT CCAGGTCTTAGATCATCCATCGATTTTATTGAGGTATGAGCTATAAACTGTGATCTCATATTTTGAGCAGCATTTCTGCA AGTAAAAAGCAAGTTGAAAATAAATCAAAATGGTGTGAGTGTCCTGCAGCTCTATTAGCTTAGTTACAAGTTAAAACTCA ACTTCTATTTTTCTACACTGGTTGTAGTATTTTTAAGGTTAAAAATAGTTAATCTGGCAGCACATTTACTAGGAGTGGTT ACAGTGGTCTAGTTTGTGGAACTATGATCTGTGTTATGGTTTTCAAATTCCTGTGGATAAATAAATAATCTATACTCTAT AGTCATATTTCCTGAAAATAACTAATTGTAGTCTATGTCAGACCTCAATTCCCTCATGCTAATCGCAGTAAATATTAAAC ATAAATGTTAGTGCAACATAACTAACATTATTCTTGAAAGATGTCTTAGTACTTCCTGTTAGGATTCTGAATATTAGGCG TTTAGTTTATTTTACATTAGGAGTTTATCTTTATTTTGGGAGTCCATCTTTTATTTTGGTAGTCTATCTTTATTTCTTAC AAGTTAAGTCTATCTTTATTAAGAATAGTCTATTATAAATAAGAGCTCTTTCATTAGGTTAGGAGGAAATTGATTATTGA AAAGTAAAAGGTTTACCTTGTAAGGGTTATCCCTTGTTAAGAAGGGTTCCTTCTTAGGTATTTTTTTCTAATAATATCAG TTATTTATCCAGAAAATTACCTCATTGCCCCTAGCCTTTATGTGTTTGGTTGTTAGGGAAACACAACCCTAACACTTCCA TTGTTCATAAAACCTTTATTTCTTTGCTTTAGTCTAGGTGATTCTATAGCTGTCCTCAAATTTGATCCTTCTTGTGATGC TAGTATTTTTGTTAGAAGTGCTGGATGGACAATGCCTATAGATAGTGGACAATAAAAGCTGCTCTAACTTCTAATTTTAT CATTGGTATTAGCACTACCCCTATACATGATTTGTACGATGCTACTTACCTCTTTCTTTGGTAGAGAAGTTTGTAGAAGC AGACTTGCTATTATTTGTTTAACTGGATAAAACTATCTCTTTATAATGTTAATAGGATTTCGTTTTGTATTTAATTTCTA AATCTTTATTATTTTGTGTATACTTTCTGAAATTTTAAGCTCCATTGTAGATAGGGACACCAAAGACACACCGGCGATTC CTTGCTCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTAATACCAC AGTAAGTTCACTTCCAAACAAGGAAGTATTATAAAACTTGAAAAGTATAGGTTTTTTTAAGTTACCAATATATTACATAT TGTACTAATCAATAAATACTTCTATTTCTTGAATCCTTAAGCATACCTTTGAGGCACTCATAGTATGTTTTGAAATCCTA ATAGAATTGATTGTCTCGGAAGAAGCTTCTGGGTGTCAAAATTGATTTTGAGGAAAAATAAGTTAATCCAAACTTGCTAT ACCTGAAACTGAACAACAGGTTTGGTTCTGTAGTGGTCTAGGATGCTGTTAGAATTTAATTGCTAGAAACATAATATAAA AGGTTTCACCTTTGTTTGTTCGCCTCGTAGTTAAAAAATTGAGATAGTTGATTAATGACAGATTGACAGTATTGATTAAA AGTCATCAATCAATAAAATTTTCAGGCGATAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTA TTGCTGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGTGTAGCTGCAGATATTGGTAAGCAAATGCTTTCCTTGGAGTGC ACATTGGTTTGACATTGCAGGTTTTCTATCATGCTTTGCTATCAGTTAACAGTATGTTTGGAAACCAACCGCGTCACCAT GTATAGCATAGAAACCACGTTAATTTTGAGTGTTTGTATTTACGTTCAAGTTGACCAAAAGCACATTTGCTCTAATGAAA CAAGAGACTTGAAATGTGCGCTGACAAAAATACAAACACTTTAATTCTGCTCAGTGTAGCTTCACCGTCAATGTGCCTCA GCGTGTGGTGCACAACGCGGAAGCAATCACCCACTAAATTTACTATAATTGGATTTTATAGCACCCTCGTTTTGATTCTT TTCCCCTTCAATACAGGGTTGGAGAAAAAGTCACCTGTTTTGGATACCGCACTGCTTGGGTTGCTTGGTTGGTTAAGAAC ACTGGCATGA
CDS sequence (LotjaGi5g1v0108300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCATCAATCTCGGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGGTTCTATGTGACAGACA CTTTGGTGGGATTAACTACCCTCTTGGAGGTGTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGCTTAGCTGATCAGGGTA GTGAGATTCTTTACAAGGCAAATGTCACTAGTGTTATAATTGAGCAGGGCAAAGCTGTAGGAGTGAGGCTTTCAGATGGC AGGGAATTCTTTGCTAAAACCATAATATCAAATGCTACTAGATGGGATACATTTGGGAAGTTACTAAAGGGAGAGACACT TCCGAAGGAGGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAATCAG AGGTTTTGCCACCAGATACAGATTGTCACCATTTTATGCTTGAGAATAACTGGTCCAAATTGGAGGAGCCATATGGAAGT ATCTTTTTAAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTC TTCAATGGACGACTGGAAGGGTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCTGATGAAATCATCAGCA GATTAGAGAAGAAATTGTTTCCAGGTCTTAGATCATCCATCGATTTTATTGAGATAGGGACACCAAAGACACACCGGCGA TTCCTTGCTCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTAATAC CACAGCGATAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCAGGAG TTATGTGTGCTCATCGTGTAGCTGCAGATATTGGGTTGGAGAAAAAGTCACCTGTTTTGGATACCGCACTGCTTGGGTTG CTTGGTTGGTTAAGAACACTGGCATGA
Protein sequence (LotjaGi5g1v0108300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHQSRKYIQDPQLLSFIDAEVLCDRHFGGINYPLGGVGGIAKSLAKGLADQGSEILYKANVTSVIIEQGKAVGVRLSDG REFFAKTIISNATRWDTFGKLLKGETLPKEEENFQKVYVKAPSFLSIHMGVKSEVLPPDTDCHHFMLENNWSKLEEPYGS IFLSIPTILDSSLAPEGHHILHIFTTSSMDDWKGLSVEEYEAKKQLVADEIISRLEKKLFPGLRSSIDFIEIGTPKTHRR FLARNEGTYGPMPRGIPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDTALLGL LGWLRTLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 328 | 309 | 1.5E-177 | – | |
| PANTHER | 20 | 328 | 309 | 1.5E-177 | – | |
| SUPERFAMILY | 20 | 303 | 284 | 7.41E-22 | ||
| Gene3D | 23 | 242 | 220 | 7.9E-18 | – | |
| Pfam | 28 | 200 | 173 | 5.4E-6 | ||
| Gene3D | 32 | 280 | 249 | 7.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0108300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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