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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0108300 |
Transcript ID | LotjaGi5g1v0108300.3 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0R0L5D6|A0A0R0L5D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0108300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20633433..20640082) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCACTTTCCCTTTTCTCTCCATTTCCTGCGTTTCTCCTCTTCTCACCCACCACCGTATCCCAATGTTGGGTGCTTT TCAGAACCTCGAATTTCAGCCAAAGTTTCAATCTGTAGCCTCTGGAGACTGCAGAGGAAGTGGTTTCGCATCTGGGTCTT GCTGCAATGCTCCGAGGCGATGCAATATGAGACAGAAACCTCGTAGAAGAAAAGGGGTGTTGGTTGTTAGTTCAAAGTCG ACGCTGAGTGTGGAGGAGCAAGTGGCGGAGAGAGTGAACGGTGGTGGAGGGTTTGATGCAATTGTTATAGGGTCTGGGAT TGGAGGGTTGGTTGCAGGGACTCAGCTTGCAGTGAAGGGTGCTAGAGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTG GAAGCTCTGGGTTTTACCAGAGGGATGGGTATACTTTTGATGTGGGTTCTTCTGTCATGTTTGGTTTCAGTGATAAGGTT ATTTTTTTTTCTTTTCAATTTAATGTTATTGGGTGAATGTGATTTGTTTTATGGTTTACTGCAATGAATTCATGATGTTA ATTCTACAAGTAATAAATTAGTGTAAAATGAATGGGGCTGAGCTCACTGAGCTGAATGTACAGAAGAGGAACTTGAATGC TGTTTCTTCCTGATATACTTAGAGCCCTTGGATACCCGTTAGAAAGTATGAAACCGGGAAAATAACACATCATGGGGCAC TTTTTGTTGAAGTAACAACTTGCAAATTATATATACAGTATACACTTCTTTTGAATTTTAATACTTAATGTAGAAGTACA CAATTCTGTGTTGTATCTGTGTCACTATACTTAGCTAGTGGCACTGAACAAAATGACCGCATCTAATTCACTCTCTTAAT TAGCGTACTAAAATTAAAGAAAGTCCATATGAGAAGTAAATAAGGAATCAAGAGCATAAGGGTAAATGTTTTTTCAAAGA AATTCTCATGACCAAGCTTTTTATGTAAAGCTTGGTTTCTGATCATTATGCTCCGAATAGCTATGGCTTGCTAATTTATG AATAATGCCTAAGCTTATAGTTGCTTTGTGAACTAAATTCTCAGTGGTATACTTCCAAGTATTACAAACTCCATTTACCT TACATTTGTGCAGGGTAATCTCAATTTGATAACACAAGCTCTGGAAGCAGTTGGTTGTAAGATGCAGGTGGTACCGGATC CAACAACTGTTCATTTCCATCTACCAAACAACCTCTCTGTTCGAGTGCACAGAGAATATGACAAATTCATCGAAGAGTTG ACCTGTTATTTTCCCCATGAAAAGGAGGGTATCCTCAAATTCTATGGTGAATGCTGGAAGGTTTGTCTCAATTGAGGTGA CTGCAGCCCCCTTAAGGCATTTTTGCCTCAACTTGTAATTCATTTTGTTAAGAGCTTACCTTTGTTTTGGCTAGATTTTC AATGCCCTGAATTCGTTGGAATTGAAGTCACTAGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCGCTTGA ATGCTTGACACTAGGTACTTTCATTTTATTTATTTGTTTTAAATGAGAGGCTGCGAATTTAAAATTCTCACCCTATGCTT CCCTCAATACATCTTTTTTGAATCTTTAGTTAATCTCATTGTTAAAAGATACTCCTCCTATCATTCAAAATAATAAGAAG ATATCACTGGACTACATGTTCTTTACAATTATCTGCTTAAATTTTCGCAAAACTAGTTCACTCAAAAATATTTATCCTAC TATGAAGATCAGGACAAGATTTGACTTTGTGATGCTTATGGAAATTCTCATGTGATTTATTTTTCATTTTTTAGAATAGA AGTGCTATAGACCCGGGGAATTATATCTAAGAAATGCATTTTTTTTTTTACAATGCCAAGCTGGGATAATTTGATAAACC TTCAAAAAGTGTATTTTCATCAATATGAGCATCTGATGAACTTCTGTGTTAAACAAAGCAAAGGGTGTTACTGACCATGA TTTTTCTTGGTATATTATGTCTGTACATTCATGTGGAAGACTACTGAATAATAACAGTATATAAGTGATCAGGTTGTCCT TGACTGTGCAGGAACCATCAATGTTTTGATATGAATTTTAGCCATTCGCTTTTCTGATGATGTTATTATATGGCAGCCTA TTATTTGCCTCAAAATGCTGGTGCCATAGCTCGGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGG TAGATATAACCACTTATTTAATTCAGTTAGAACATAAGTTTCATTATTAAGGAAAATGTTAAATGTCGTGAAGATTTATT CTCTTCACACGAAATGTGTCACGTATGATAGTAACTATGTCAAAGACATTGATTCTAATGGGTCCCACGAAAGATGTTCG TGGGTGATTGTCTGGTCCCATAAGATAAATTTAGGCTAAAACACACATTGCCGCATCATTTGTACCTTTCTGTTAAAAGC TGTTTCCATGTGGAATAGCACTACTTTTTTTGAAAGCAGAAATAGCACTACTTATCTACTAATTCATTAATTATCCAAAT TTTTGCTTCATTATTGGAAACTTTAATCCATTAAAAACTCTGGTATTGCAGTGTTTTATAGTGAGCACCGTCAATGCTTT GCAGACTCCAATGATCAATGCTGCCATGGTATAATGGTTACTTGCTTATTTCATCTTTGTCTTAGAGGTTTCCGTTTTTA GCATCATTATTTGACTCTATTTTTGCCACCAGGTTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGAGGT GTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGCTTAGCTGATCAGGGTAGTGAGATTCTTTACAAGGCAAATGTCACTAG TGTTATAATTGAGCAGGGCAAAGCTGTAAGTGAGATATGAGAATATACATAAGCATGACATATTTAGAAAAATGCATCTG TTTCTCAAGAATCGTGGTATACATTTTGCAGGTAGGAGTGAGGCTTTCAGATGGCAGGGAATTCTTTGCTAAAACCATAA TATCAAATGCTACTAGATGGGATACATTTGGTTGGTTTCGAAAATAGATTTTTAAGATTATTTTTTGTTTTGTTCATATT GGAATGATTATCTTCTTGTCTTTCTCTTTCTATTAGAAAGGCTCATGAGTTGTTTAGATTCGGGTTTGAGGTAAAATATA CTTCAAGTCAATTATGATCCAAACCTAACCAATCCAATTAAGATTAAGCTAGTTTGGTTCAGGTCATTGGATTAGGGTAC AAAAATTAAATCATAAATTTGTTAGGTATTTATCTGCATATATACCTTTATATATAAAATTTTAAACTTAATGTTACTAC CAGTAAAATGTGGTTCTTTATTTTTTAATAGTGTTATATTACTCAAATCAATTTTAAATGTTAAAATCACTTCTACTTAA AAGTTAACCATAAGTAACTCATTAACTTTTTAACCTAAAATGTGAAAATAAAATTGGATCGTAAATATGGCCAAAGACGC TTGATAATCCTAGATCGCAAGGTAAACATAATTTTTAAATAAGATAAAAATAAGAAACGAGATAAATATCAAACTTCAAA AGAACAAATATAAAAAATTAAATATGACAAATATTAATTGGTGATCAGGTTAGTTCGAGTTGGAAAAAATAGTTCTATGT GTTCATTTGTTAACTAAAGTAACTATCGGGTTCAATCCAATCTGATGAACACTCTTACTTATGCGTTCGTTTGTTCTTAA TCAGCTAAACCCAAATTGCTCATTCTTACATTGTAGGGAAGTTACTAAAGGGAGAGACACTTCCGAAGGAGGAAGAGAAC TTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAATCAGAGGTTTTGCCACCAGATAC AGATTGTCACCATTTTATGCTTGAGGTAGTTGGAAGTTTCCTGACCTTAGATCTCTTAATCACCTTAATGAATTTGGATG AATAATCTTCTACACGTATTTTGTTGGAACTTGTCCAGAATAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTT TTAAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTCTTCAAT GGACGACTGGAAGGTAGGAAATACTGATTTGTTAGTTCTGATAAATAAGTTGAAACTTCCCCATGTGTGCTTCTGACTTT AGAAACTACCTTTTTTGTTCTTCCCTCCTGTTTTATCCATTTGCTGACTCAAATATCAAATGTCTGTTTTCTGTACCAGG GTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCTGATGAAATCATCAGCAGATTAGAGAAGAAATTGTTT CCAGGTCTTAGATCATCCATCGATTTTATTGAGGTATGAGCTATAAACTGTGATCTCATATTTTGAGCAGCATTTCTGCA AGTAAAAAGCAAGTTGAAAATAAATCAAAATGGTGTGAGTGTCCTGCAGCTCTATTAGCTTAGTTACAAGTTAAAACTCA ACTTCTATTTTTCTACACTGGTTGTAGTATTTTTAAGGTTAAAAATAGTTAATCTGGCAGCACATTTACTAGGAGTGGTT ACAGTGGTCTAGTTTGTGGAACTATGATCTGTGTTATGGTTTTCAAATTCCTGTGGATAAATAAATAATCTATACTCTAT AGTCATATTTCCTGAAAATAACTAATTGTAGTCTATGTCAGACCTCAATTCCCTCATGCTAATCGCAGTAAATATTAAAC ATAAATGTTAGTGCAACATAACTAACATTATTCTTGAAAGATGTCTTAGTACTTCCTGTTAGGATTCTGAATATTAGGCG TTTAGTTTATTTTACATTAGGAGTTTATCTTTATTTTGGGAGTCCATCTTTTATTTTGGTAGTCTATCTTTATTTCTTAC AAGTTAAGTCTATCTTTATTAAGAATAGTCTATTATAAATAAGAGCTCTTTCATTAGGTTAGGAGGAAATTGATTATTGA AAAGTAAAAGGTTTACCTTGTAAGGGTTATCCCTTGTTAAGAAGGGTTCCTTCTTAGGTATTTTTTTCTAATAATATCAG TTATTTATCCAGAAAATTACCTCATTGCCCCTAGCCTTTATGTGTTTGGTTGTTAGGGAAACACAACCCTAACACTTCCA TTGTTCATAAAACCTTTATTTCTTTGCTTTAGTCTAGGTGATTCTATAGCTGTCCTCAAATTTGATCCTTCTTGTGATGC TAGTATTTTTGTTAGAAGTGCTGGATGGACAATGCCTATAGATAGTGGACAATAAAAGCTGCTCTAACTTCTAATTTTAT CATTGGTATTAGCACTACCCCTATACATGATTTGTACGATGCTACTTACCTCTTTCTTTGGTAGAGAAGTTTGTAGAAGC AGACTTGCTATTATTTGTTTAACTGGATAAAACTATCTCTTTATAATGTTAATAGGATTTCGTTTTGTATTTAATTTCTA AATCTTTATTATTTTGTGTATACTTTCTGAAATTTTAAGCTCCATTGTAGATAGGGACACCAAAGACACACCGGCGATTC CTTGCTCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTAATACCAC AGTAAGTTCACTTCCAAACAAGGAAGTATTATAAAACTTGAAAAGTATAGGTTTTTTTAAGTTACCAATATATTACATAT TGTACTAATCAATAAATACTTCTATTTCTTGAATCCTTAAGCATACCTTTGAGGCACTCATAGTATGTTTTGAAATCCTA ATAGAATTGATTGTCTCGGAAGAAGCTTCTGGGTGTCAAAATTGATTTTGAGGAAAAATAAGTTAATCCAAACTTGCTAT ACCTGAAACTGAACAACAGGTTTGGTTCTGTAGTGGTCTAGGATGCTGTTAGAATTTAATTGCTAGAAACATAATATAAA AGGTTTCACCTTTGTTTGTTCGCCTCGTAGTTAAAAAATTGAGATAGTTGATTAATGACAGATTGACAGTATTGATTAAA AGTCATCAATCAATAAAATTTTCAGGCGATAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTA TTGCTGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGTGTAGCTGCAGATATTGGTAAGCAAATGCTTTCCTTGGAGTGC ACATTGGTTTGACATTGCAGGTTTTCTATCATGCTTTGCTATCAGTTAACAGTATGTTTGGAAACCAACCGCGTCACCAT GTATAGCATAGAAACCACGTTAATTTTGAGTGTTTGTATTTACGTTCAAGTTGACCAAAAGCACATTTGCTCTAATGAAA CAAGAGACTTGAAATGTGCGCTGACAAAAATACAAACACTTTAATTCTGCTCAGTGTAGCTTCACCGTCAATGTGCCTCA GCGTGTGGTGCACAACGCGGAAGCAATCACCCACTAAATTTACTATAATTGGATTTTATAGCACCCTCGTTTTGATTCTT TTCCCCTTCAATACAGGGTTGGAGAAAAAGTCACCTGTTTTGGATACCGCACTGCTTGGGTTGCTTGGTTGGTTAAGAAC ACTGGCATGA
CDS sequence (LotjaGi5g1v0108300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCACTTTCCCTTTTCTCTCCATTTCCTGCGTTTCTCCTCTTCTCACCCACCACCGTATCCCAATGTTGGGTGCTTT TCAGAACCTCGAATTTCAGCCAAAGTTTCAATCTGTAGCCTCTGGAGACTGCAGAGGAAGTGGTTTCGCATCTGGGTCTT GCTGCAATGCTCCGAGGCGATGCAATATGAGACAGAAACCTCGTAGAAGAAAAGGGGTGTTGGTTGTTAGTTCAAAGTCG ACGCTGAGTGTGGAGGAGCAAGTGGCGGAGAGAGTGAACGGTGGTGGAGGGTTTGATGCAATTGTTATAGGGTCTGGGAT TGGAGGGTTGGTTGCAGGGACTCAGCTTGCAGTGAAGGGTGCTAGAGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTG GAAGCTCTGGGTTTTACCAGAGGGATGGGTATACTTTTGATGTGGGTTCTTCTGTCATGTTTGGTTTCAGTGATAAGGGT AATCTCAATTTGATAACACAAGCTCTGGAAGCAGTTGGTTGTAAGATGCAGGTGGTACCGGATCCAACAACTGTTCATTT CCATCTACCAAACAACCTCTCTGTTCGAGTGCACAGAGAATATGACAAATTCATCGAAGAGTTGACCTGTTATTTTCCCC ATGAAAAGGAGGGTATCCTCAAATTCTATGGTGAATGCTGGAAGATTTTCAATGCCCTGAATTCGTTGGAATTGAAGTCA CTAGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCGCTTGAATGCTTGACACTAGCCTATTATTTGCCTCA AAATGCTGGTGCCATAGCTCGGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGGTTCTATGTGACA GACACTTTGGTGGGATTAACTACCCTCTTGGAGGTGTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGCTTAGCTGATCAG GGTAGTGAGATTCTTTACAAGGCAAATGTCACTAGTGTTATAATTGAGCAGGGCAAAGCTGTAGGAGTGAGGCTTTCAGA TGGCAGGGAATTCTTTGCTAAAACCATAATATCAAATGCTACTAGATGGGATACATTTGGGAAGTTACTAAAGGGAGAGA CACTTCCGAAGGAGGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAA TCAGAGGTTTTGCCACCAGATACAGATTGTCACCATTTTATGCTTGAGAATAACTGGTCCAAATTGGAGGAGCCATATGG AAGTATCTTTTTAAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTCACATATTCACAA CTTCTTCAATGGACGACTGGAAGGGTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCTGATGAAATCATC AGCAGATTAGAGAAGAAATTGTTTCCAGGTCTTAGATCATCCATCGATTTTATTGAGATAGGGACACCAAAGACACACCG GCGATTCCTTGCTCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTA ATACCACAGCGATAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCA GGAGTTATGTGTGCTCATCGTGTAGCTGCAGATATTGGGTTGGAGAAAAAGTCACCTGTTTTGGATACCGCACTGCTTGG GTTGCTTGGTTGGTTAAGAACACTGGCATGA
Protein sequence (LotjaGi5g1v0108300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTFPFLSISCVSPLLTHHRIPMLGAFQNLEFQPKFQSVASGDCRGSGFASGSCCNAPRRCNMRQKPRRRKGVLVVSSKS TLSVEEQVAERVNGGGGFDAIVIGSGIGGLVAGTQLAVKGARVLVLEKYVIPGGSSGFYQRDGYTFDVGSSVMFGFSDKG NLNLITQALEAVGCKMQVVPDPTTVHFHLPNNLSVRVHREYDKFIEELTCYFPHEKEGILKFYGECWKIFNALNSLELKS LEEPLYLFGQFFQKPLECLTLAYYLPQNAGAIARKYIQDPQLLSFIDAEVLCDRHFGGINYPLGGVGGIAKSLAKGLADQ GSEILYKANVTSVIIEQGKAVGVRLSDGREFFAKTIISNATRWDTFGKLLKGETLPKEEENFQKVYVKAPSFLSIHMGVK SEVLPPDTDCHHFMLENNWSKLEEPYGSIFLSIPTILDSSLAPEGHHILHIFTTSSMDDWKGLSVEEYEAKKQLVADEII SRLEKKLFPGLRSSIDFIEIGTPKTHRRFLARNEGTYGPMPRGIPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFS GVMCAHRVAADIGLEKKSPVLDTALLGLLGWLRTLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 1 | 1 | - | – | |
Phobius | 1 | 17 | 17 | - | – | |
Phobius | 2 | 12 | 11 | - | – | |
Phobius | 13 | 17 | 5 | - | – | |
Phobius | 18 | 596 | 579 | - | – | |
PANTHER | 56 | 290 | 235 | 7.9E-285 | – | |
PANTHER | 56 | 290 | 235 | 7.9E-285 | – | |
SUPERFAMILY | 97 | 571 | 475 | 5.56E-49 | ||
TIGRFAM | 98 | 573 | 476 | 4.4E-253 | ||
Gene3D | 98 | 212 | 115 | 3.9E-17 | ||
Pfam | 107 | 468 | 362 | 1.7E-18 | ||
PANTHER | 289 | 596 | 308 | 7.9E-285 | – | |
PANTHER | 289 | 596 | 308 | 7.9E-285 | – | |
Gene3D | 291 | 510 | 220 | 3.9E-17 | – | |
Gene3D | 300 | 548 | 249 | 3.9E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Carotenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
Molecular function | Carotenoid isomerase activity | Catalysis of the isomerization of poly-cis-carotenoids to all-trans-carotenoids. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0108300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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