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LotjaGi5g1v0108300.6

Overview

Field Value
Gene ID LotjaGi5g1v0108300
Transcript ID LotjaGi5g1v0108300.6
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Carotenoid isomerase; TAIR: AT1G06820.1 carotenoid isomerase; Swiss-Prot: sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic; TrEMBL-Plants: tr|A0A0B2PRP5|A0A0B2PRP5_GLYSO Prolycopene isomerase, chloroplastic; Found in the gene: LotjaGi5g1v0108300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:20633433..20640082) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTCACTTTCCCTTTTCTCTCCATTTCCTGCGTTTCTCCTCTTCTCACCCACCACCGTATCCCAATGTTGGGTGCTTT TCAGAACCTCGAATTTCAGCCAAAGTTTCAATCTGTAGCCTCTGGAGACTGCAGAGGAAGTGGTTTCGCATCTGGGTCTT GCTGCAATGCTCCGAGGCGATGCAATATGAGACAGAAACCTCGTAGAAGAAAAGGGGTGTTGGTTGTTAGTTCAAAGTCG ACGCTGAGTGTGGAGGAGCAAGTGGCGGAGAGAGTGAACGGTGGTGGAGGGTTTGATGCAATTGTTATAGGGTCTGGGAT TGGAGGGTTGGTTGCAGGGACTCAGCTTGCAGTGAAGGGTGCTAGAGTTTTGGTTTTGGAGAAGTATGTGATTCCTGGTG GAAGCTCTGGGTTTTACCAGAGGGATGGGTATACTTTTGATGTGGGTTCTTCTGTCATGTTTGGTTTCAGTGATAAGGTT ATTTTTTTTTCTTTTCAATTTAATGTTATTGGGTGAATGTGATTTGTTTTATGGTTTACTGCAATGAATTCATGATGTTA ATTCTACAAGTAATAAATTAGTGTAAAATGAATGGGGCTGAGCTCACTGAGCTGAATGTACAGAAGAGGAACTTGAATGC TGTTTCTTCCTGATATACTTAGAGCCCTTGGATACCCGTTAGAAAGTATGAAACCGGGAAAATAACACATCATGGGGCAC TTTTTGTTGAAGTAACAACTTGCAAATTATATATACAGTATACACTTCTTTTGAATTTTAATACTTAATGTAGAAGTACA CAATTCTGTGTTGTATCTGTGTCACTATACTTAGCTAGTGGCACTGAACAAAATGACCGCATCTAATTCACTCTCTTAAT TAGCGTACTAAAATTAAAGAAAGTCCATATGAGAAGTAAATAAGGAATCAAGAGCATAAGGGTAAATGTTTTTTCAAAGA AATTCTCATGACCAAGCTTTTTATGTAAAGCTTGGTTTCTGATCATTATGCTCCGAATAGCTATGGCTTGCTAATTTATG AATAATGCCTAAGCTTATAGTTGCTTTGTGAACTAAATTCTCAGTGGTATACTTCCAAGTATTACAAACTCCATTTACCT TACATTTGTGCAGGGTAATCTCAATTTGATAACACAAGCTCTGGAAGCAGTTGGTTGTAAGATGCAGGTGGTACCGGATC CAACAACTGTTCATTTCCATCTACCAAACAACCTCTCTGTTCGAGTGCACAGAGAATATGACAAATTCATCGAAGAGTTG ACCTGTTATTTTCCCCATGAAAAGGAGGGTATCCTCAAATTCTATGGTGAATGCTGGAAGGTTTGTCTCAATTGAGGTGA CTGCAGCCCCCTTAAGGCATTTTTGCCTCAACTTGTAATTCATTTTGTTAAGAGCTTACCTTTGTTTTGGCTAGATTTTC AATGCCCTGAATTCGTTGGAATTGAAGTCACTAGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCGCTTGA ATGCTTGACACTAGGTACTTTCATTTTATTTATTTGTTTTAAATGAGAGGCTGCGAATTTAAAATTCTCACCCTATGCTT CCCTCAATACATCTTTTTTGAATCTTTAGTTAATCTCATTGTTAAAAGATACTCCTCCTATCATTCAAAATAATAAGAAG ATATCACTGGACTACATGTTCTTTACAATTATCTGCTTAAATTTTCGCAAAACTAGTTCACTCAAAAATATTTATCCTAC TATGAAGATCAGGACAAGATTTGACTTTGTGATGCTTATGGAAATTCTCATGTGATTTATTTTTCATTTTTTAGAATAGA AGTGCTATAGACCCGGGGAATTATATCTAAGAAATGCATTTTTTTTTTTACAATGCCAAGCTGGGATAATTTGATAAACC TTCAAAAAGTGTATTTTCATCAATATGAGCATCTGATGAACTTCTGTGTTAAACAAAGCAAAGGGTGTTACTGACCATGA TTTTTCTTGGTATATTATGTCTGTACATTCATGTGGAAGACTACTGAATAATAACAGTATATAAGTGATCAGGTTGTCCT TGACTGTGCAGGAACCATCAATGTTTTGATATGAATTTTAGCCATTCGCTTTTCTGATGATGTTATTATATGGCAGCCTA TTATTTGCCTCAAAATGCTGGTGCCATAGCTCGGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGG TAGATATAACCACTTATTTAATTCAGTTAGAACATAAGTTTCATTATTAAGGAAAATGTTAAATGTCGTGAAGATTTATT CTCTTCACACGAAATGTGTCACGTATGATAGTAACTATGTCAAAGACATTGATTCTAATGGGTCCCACGAAAGATGTTCG TGGGTGATTGTCTGGTCCCATAAGATAAATTTAGGCTAAAACACACATTGCCGCATCATTTGTACCTTTCTGTTAAAAGC TGTTTCCATGTGGAATAGCACTACTTTTTTTGAAAGCAGAAATAGCACTACTTATCTACTAATTCATTAATTATCCAAAT TTTTGCTTCATTATTGGAAACTTTAATCCATTAAAAACTCTGGTATTGCAGTGTTTTATAGTGAGCACCGTCAATGCTTT GCAGACTCCAATGATCAATGCTGCCATGGTATAATGGTTACTTGCTTATTTCATCTTTGTCTTAGAGGTTTCCGTTTTTA GCATCATTATTTGACTCTATTTTTGCCACCAGGTTCTATGTGACAGACACTTTGGTGGGATTAACTACCCTCTTGGAGGT GTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGCTTAGCTGATCAGGGTAGTGAGATTCTTTACAAGGCAAATGTCACTAG TGTTATAATTGAGCAGGGCAAAGCTGTAAGTGAGATATGAGAATATACATAAGCATGACATATTTAGAAAAATGCATCTG TTTCTCAAGAATCGTGGTATACATTTTGCAGGTAGGAGTGAGGCTTTCAGATGGCAGGGAATTCTTTGCTAAAACCATAA TATCAAATGCTACTAGATGGGATACATTTGGTTGGTTTCGAAAATAGATTTTTAAGATTATTTTTTGTTTTGTTCATATT GGAATGATTATCTTCTTGTCTTTCTCTTTCTATTAGAAAGGCTCATGAGTTGTTTAGATTCGGGTTTGAGGTAAAATATA CTTCAAGTCAATTATGATCCAAACCTAACCAATCCAATTAAGATTAAGCTAGTTTGGTTCAGGTCATTGGATTAGGGTAC AAAAATTAAATCATAAATTTGTTAGGTATTTATCTGCATATATACCTTTATATATAAAATTTTAAACTTAATGTTACTAC CAGTAAAATGTGGTTCTTTATTTTTTAATAGTGTTATATTACTCAAATCAATTTTAAATGTTAAAATCACTTCTACTTAA AAGTTAACCATAAGTAACTCATTAACTTTTTAACCTAAAATGTGAAAATAAAATTGGATCGTAAATATGGCCAAAGACGC TTGATAATCCTAGATCGCAAGGTAAACATAATTTTTAAATAAGATAAAAATAAGAAACGAGATAAATATCAAACTTCAAA AGAACAAATATAAAAAATTAAATATGACAAATATTAATTGGTGATCAGGTTAGTTCGAGTTGGAAAAAATAGTTCTATGT GTTCATTTGTTAACTAAAGTAACTATCGGGTTCAATCCAATCTGATGAACACTCTTACTTATGCGTTCGTTTGTTCTTAA TCAGCTAAACCCAAATTGCTCATTCTTACATTGTAGGGAAGTTACTAAAGGGAGAGACACTTCCGAAGGAGGAAGAGAAC TTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAATCAGAGGTTTTGCCACCAGATAC AGATTGTCACCATTTTATGCTTGAGGTAGTTGGAAGTTTCCTGACCTTAGATCTCTTAATCACCTTAATGAATTTGGATG AATAATCTTCTACACGTATTTTGTTGGAACTTGTCCAGAATAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTT TTAAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTCTTCAAT GGACGACTGGAAGGTAGGAAATACTGATTTGTTAGTTCTGATAAATAAGTTGAAACTTCCCCATGTGTGCTTCTGACTTT AGAAACTACCTTTTTTGTTCTTCCCTCCTGTTTTATCCATTTGCTGACTCAAATATCAAATGTCTGTTTTCTGTACCAGG GTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCTGATGAAATCATCAGCAGATTAGAGAAGAAATTGTTT CCAGGTCTTAGATCATCCATCGATTTTATTGAGGTATGAGCTATAAACTGTGATCTCATATTTTGAGCAGCATTTCTGCA AGTAAAAAGCAAGTTGAAAATAAATCAAAATGGTGTGAGTGTCCTGCAGCTCTATTAGCTTAGTTACAAGTTAAAACTCA ACTTCTATTTTTCTACACTGGTTGTAGTATTTTTAAGGTTAAAAATAGTTAATCTGGCAGCACATTTACTAGGAGTGGTT ACAGTGGTCTAGTTTGTGGAACTATGATCTGTGTTATGGTTTTCAAATTCCTGTGGATAAATAAATAATCTATACTCTAT AGTCATATTTCCTGAAAATAACTAATTGTAGTCTATGTCAGACCTCAATTCCCTCATGCTAATCGCAGTAAATATTAAAC ATAAATGTTAGTGCAACATAACTAACATTATTCTTGAAAGATGTCTTAGTACTTCCTGTTAGGATTCTGAATATTAGGCG TTTAGTTTATTTTACATTAGGAGTTTATCTTTATTTTGGGAGTCCATCTTTTATTTTGGTAGTCTATCTTTATTTCTTAC AAGTTAAGTCTATCTTTATTAAGAATAGTCTATTATAAATAAGAGCTCTTTCATTAGGTTAGGAGGAAATTGATTATTGA AAAGTAAAAGGTTTACCTTGTAAGGGTTATCCCTTGTTAAGAAGGGTTCCTTCTTAGGTATTTTTTTCTAATAATATCAG TTATTTATCCAGAAAATTACCTCATTGCCCCTAGCCTTTATGTGTTTGGTTGTTAGGGAAACACAACCCTAACACTTCCA TTGTTCATAAAACCTTTATTTCTTTGCTTTAGTCTAGGTGATTCTATAGCTGTCCTCAAATTTGATCCTTCTTGTGATGC TAGTATTTTTGTTAGAAGTGCTGGATGGACAATGCCTATAGATAGTGGACAATAAAAGCTGCTCTAACTTCTAATTTTAT CATTGGTATTAGCACTACCCCTATACATGATTTGTACGATGCTACTTACCTCTTTCTTTGGTAGAGAAGTTTGTAGAAGC AGACTTGCTATTATTTGTTTAACTGGATAAAACTATCTCTTTATAATGTTAATAGGATTTCGTTTTGTATTTAATTTCTA AATCTTTATTATTTTGTGTATACTTTCTGAAATTTTAAGCTCCATTGTAGATAGGGACACCAAAGACACACCGGCGATTC CTTGCTCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTAATACCAC AGTAAGTTCACTTCCAAACAAGGAAGTATTATAAAACTTGAAAAGTATAGGTTTTTTTAAGTTACCAATATATTACATAT TGTACTAATCAATAAATACTTCTATTTCTTGAATCCTTAAGCATACCTTTGAGGCACTCATAGTATGTTTTGAAATCCTA ATAGAATTGATTGTCTCGGAAGAAGCTTCTGGGTGTCAAAATTGATTTTGAGGAAAAATAAGTTAATCCAAACTTGCTAT ACCTGAAACTGAACAACAGGTTTGGTTCTGTAGTGGTCTAGGATGCTGTTAGAATTTAATTGCTAGAAACATAATATAAA AGGTTTCACCTTTGTTTGTTCGCCTCGTAGTTAAAAAATTGAGATAGTTGATTAATGACAGATTGACAGTATTGATTAAA AGTCATCAATCAATAAAATTTTCAGGCGATAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTA TTGCTGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGTGTAGCTGCAGATATTGGTAAGCAAATGCTTTCCTTGGAGTGC ACATTGGTTTGACATTGCAGGTTTTCTATCATGCTTTGCTATCAGTTAACAGTATGTTTGGAAACCAACCGCGTCACCAT GTATAGCATAGAAACCACGTTAATTTTGAGTGTTTGTATTTACGTTCAAGTTGACCAAAAGCACATTTGCTCTAATGAAA CAAGAGACTTGAAATGTGCGCTGACAAAAATACAAACACTTTAATTCTGCTCAGTGTAGCTTCACCGTCAATGTGCCTCA GCGTGTGGTGCACAACGCGGAAGCAATCACCCACTAAATTTACTATAATTGGATTTTATAGCACCCTCGTTTTGATTCTT TTCCCCTTCAATACAGGGTTGGAGAAAAAGTCACCTGTTTTGGATACCGCACTGCTTGGGTTGCTTGGTTGGTTAAGAAC ACTGGCATGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0108300.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTCACTTTCCCTTTTCTCTCCATTTCCTGCGTTTCTCCTCTTCTCACCCACCACCGTATCCCAATGTTGGGTGCTTT TCAGAACCTCGAATTTCAGCCAAAGTTTCAATCTGTAGCCTCTGGAGACTCTCGTAGAAGAAAAGGGGTGTTGGTTGTTA GTTCAAAGTCGACGCTGAGTGTGGAGGAGCAAGTGGCGGAGAGAGTGAACGGTGGTGGAGGGTTTGATGCAATTGTTATA GGGTCTGGGATTGGAGGGTTGGTTGCAGGGACTCAGCTTGCAGTGAAGGGTGCTAGAGTTTTGGTTTTGGAGAAGTATGT GATTCCTGGTGGAAGCTCTGGGTTTTACCAGAGGGATGGGTATACTTTTGATGTGGGTTCTTCTGTCATGTTTGGTTTCA GTGATAAGGGTAATCTCAATTTGATAACACAAGCTCTGGAAGCAGTTGGTTGTAAGATGCAGGTGGTACCGGATCCAACA ACTGTTCATTTCCATCTACCAAACAACCTCTCTGTTCGAGTGCACAGAGAATATGACAAATTCATCGAAGAGTTGACCTG TTATTTTCCCCATGAAAAGGAGGGTATCCTCAAATTCTATGGTGAATGCTGGAAGATTTTCAATGCCCTGAATTCGTTGG AATTGAAGTCACTAGAGGAACCGCTCTACCTTTTTGGACAGTTTTTTCAGAAGCCGCTTGAATGCTTGACACTAGCCTAT TATTTGCCTCAAAATGCTGGTGCCATAGCTCGGAAGTACATTCAGGATCCACAGTTGTTGTCTTTCATAGATGCAGAGTG TTTTATAGTGAGCACCGTCAATGCTTTGCAGACTCCAATGATCAATGCTGCCATGGTTCTATGTGACAGACACTTTGGTG GGATTAACTACCCTCTTGGAGGTGTTGGTGGAATTGCAAAGTCCTTGGCAAAAGGCTTAGCTGATCAGGGTAGTGAGATT CTTTACAAGGCAAATGTCACTAGTGTTATAATTGAGCAGGGCAAAGCTGTAGGAGTGAGGCTTTCAGATGGCAGGGAATT CTTTGCTAAAACCATAATATCAAATGCTACTAGATGGGATACATTTGGGAAGTTACTAAAGGGAGAGACACTTCCGAAGG AGGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAAATCAGAGGTTTTG CCACCAGATACAGATTGTCACCATTTTATGCTTGAGAATAACTGGTCCAAATTGGAGGAGCCATATGGAAGTATCTTTTT AAGTATACCAACTATTCTTGATTCATCGTTGGCTCCTGAAGGTCATCATATCCTTCACATATTCACAACTTCTTCAATGG ACGACTGGAAGGGTCTCTCAGTTGAAGAATATGAGGCAAAAAAGCAGCTAGTAGCTGATGAAATCATCAGCAGATTAGAG AAGAAATTGTTTCCAGGTCTTAGATCATCCATCGATTTTATTGAGATAGGGACACCAAAGACACACCGGCGATTCCTTGC TCGTAATGAGGGAACTTATGGACCAATGCCACGTGGAATTCCAAAGGGGTTGTTGGGAATGCCGTTTAATACCACAGCGA TAGATGGTCTTTACTGTGTTGGAGACAGCTGTTTCCCTGGACAAGGTGTTATTGCTGTAGCTTTCTCAGGAGTTATGTGT GCTCATCGTGTAGCTGCAGATATTGGGTTGGAGAAAAAGTCACCTGTTTTGGATACCGCACTGCTTGGGTTGCTTGGTTG GTTAAGAACACTGGCATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0108300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLTFPFLSISCVSPLLTHHRIPMLGAFQNLEFQPKFQSVASGDSRRRKGVLVVSSKSTLSVEEQVAERVNGGGGFDAIVI GSGIGGLVAGTQLAVKGARVLVLEKYVIPGGSSGFYQRDGYTFDVGSSVMFGFSDKGNLNLITQALEAVGCKMQVVPDPT TVHFHLPNNLSVRVHREYDKFIEELTCYFPHEKEGILKFYGECWKIFNALNSLELKSLEEPLYLFGQFFQKPLECLTLAY YLPQNAGAIARKYIQDPQLLSFIDAECFIVSTVNALQTPMINAAMVLCDRHFGGINYPLGGVGGIAKSLAKGLADQGSEI LYKANVTSVIIEQGKAVGVRLSDGREFFAKTIISNATRWDTFGKLLKGETLPKEEENFQKVYVKAPSFLSIHMGVKSEVL PPDTDCHHFMLENNWSKLEEPYGSIFLSIPTILDSSLAPEGHHILHIFTTSSMDDWKGLSVEEYEAKKQLVADEIISRLE KKLFPGLRSSIDFIEIGTPKTHRRFLARNEGTYGPMPRGIPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMC AHRVAADIGLEKKSPVLDTALLGLLGWLRTLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 1 1 - –
Phobius
SIGNAL_PEPTIDE
1 17 17 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
2 12 11 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
13 17 5 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
18 592 575 - –
PANTHER
PTHR46313:SF3
36 592 557 0.0 –
PANTHER
PTHR46313
36 592 557 0.0 –
SUPERFAMILY
SSF51905
74 567 494 4.6E-55
IPR036188
TIGRFAM
TIGR02730
75 569 495 2.6E-274
IPR014101
Gene3D
G3DSA:3.50.50.60
75 189 115 3.9E-17
IPR036188
Pfam
PF01593
84 464 381 2.4E-17
IPR002937
Gene3D
G3DSA:3.50.50.60
287 398 112 2.9E-15
IPR036188

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016117
Biological process Carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0046608
Molecular function Carotenoid isomerase activity Catalysis of the isomerization of poly-cis-carotenoids to all-trans-carotenoids.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0108300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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