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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0118000 |
| Transcript ID | LotjaGi5g1v0118000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G21190.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190; TrEMBL-Plants: tr|A0A151T4C9|A0A151T4C9_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi5g1v0118000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:24356271..24360497) extracted from Lotus japonicus Gifu genome v1.2.
TCGATGCTTAGAAGGCCCCATATAGCCCCTTATCTCTCTGAAATGTTGGAAAAGTGTAAGAGTCCAAAACGTTGAGGTTT TTGAGTTCGTCAACACGGTTGGCAGAGGTGAGTTTTTCGTTTTCCTTTTAGGATTCATTTAATTCAAGTTTTAGTGCATT TGTATACTGTAATGATGATAGTTGAGTGGTTGTACTTGTCTTGAAGCATGATTTTTGGTGAAAAAAGATGAATAGTTTAA CTTGTTATGTGGGTTTTTGAATTTGTTTAGTTTTCCCTGTTAGCTTTTAATATATATAATGACGTAGTTTTTCATGTTAA GTTGCTGAAGCTCTGTTGTTCAAATTTGATTTGAACTACTTTGTGGATTACTGATAAGGTGACTGTCGTCGTCTTTGAAA AGGGAAGCTGGTTTTTTTTTTCTCACATTGTTCTTATTTATGGTACTTTTTACAATTTTTTGTGATTTTTTTTCTTCTAA AGTCTGGTGACCCAGCCTAACCTAACCTAACCAAGTCTATATTTCAGTTTCTAAACCCCAAATTCAGAATAGTGCTGCTG CCCCATCCACCTCCGACCACCGCTCGGCCCATTCCCGGTTACCTGCGGCCGCGTGACCACCCTCGCGGCCACCGGCAACC ACTCCGGTCTCCGGCCACCGCGTCTCTGCTCCATCCTAGCTCTTAGGTAATTTTTCTCTGCAATTTTTTCGTTTTTCCAC TCTGTTTCTGCGTCCTCTCACCTCAGCTTCCCTCTCTCTAATCTCCCGAAGGCTTGTTTCTTCTCCTCAGTTGTTACTGA CTTACTTTTGATTCCTCTCCTCTATTACAACTTACAACCTTCTGTTCCTTCTCCTTTCTCCTCTGTCACTGTTTGCTTAA ATCTTTGTTTTCTTTCCCCTTTTTAGTGCTGGTGCGTGTTCCTCTGTTTTGCAATGGCAAGTGGCATTGACACTCAACTT GACTACACTACATTGGGATTGGATGATTAGTTGTTTAGATTAAATTTTACTCTTTAGACTTCATTTTTCATGTCAATTAG AATATGAAGTCTTGAATTTGTCATGATGTTTTGGTAATTGGTATGTAATACTCTCAATGAGAGTATGAGACTTAATATCT ATCTAGTAGTATCTAATATCCATTGAACCTTTGTTATGATATTTGCTATTATATATATGTTGAGCCTATATTTGATGATA TAAGTTGTTATTAGTTAGCAGAATTTTTTATTTGTTGTATTGTATAATTGCATTATGCAGGTTTTTAATGTGTGTATGTA TAATTGATTATATATATATATATATATATATATATATATTTATTTATTTATAACTTTTTTATTGAGGCCGCCATGGCACT GCCGTGGCATCCGCCATAATTATATGGCGGTATTTTGGCTTTCCGCCATCTGTCATTGATAACACTGTTTTCTATTAGTT ACTTACTACTATGGCCATTTTTTGGGCCTGATTTATTTCAGACTGGAACTGATTACTGACCTGTTTGGCCTAGCTACTAT ACAGCTTAAAATAAGTAAATAAATGAAAGGATTAAAGGTGTTTTCTGGTTTTCTCTAAATCGGTAACAATTACGTGTCAT GTTGGCGCCATATTTTATCCTTATGTTGTGGTGCAGAAGCTGGAATATTGAACATGCTAAAAGCAAAATTGGTTATGAGA AATTAGCTAAATTGACTTTAGTGATGGCTGTTATGAGAACAATTTTCACGTGAGTAATTGCTGTTATGGCAGAAAATTCC CACCACAACCAAATAGGCTTTTAATAATTTGTGAATTTCGTACCCTGGGAAAATTTGCAAGGTCCTACTGATTTCTTATG TCCTAATCATGTTTTTGTTTTCTATTGTAGAGTTCGTCAGGATGCTTGCACTGACAGATTTTCCACTACTTATTGCTAAA CCATTTGAAGAAATTAAAATACCAACAAGTATACGAAGCACTGTGGTAAGATCCTTAGGTTTATGGTTATTAATGGATGG AAACCAAATTTCTCTGATGTAAATTTTTTTTACACCAAATATTTTTGCTTTAGGAAATGACAGGTGAATAAATTTGTATG AATTTCTTTTTTAATATCAGGTATGTGCTGCAAAAGGTAAAAGACCTAGATATCCACGAGTTTGGAAGACCCAGAAAAAA ATTGGGACCATTTCCAAGGCTGCTAAACTTGTTCAGTCTGTAAGTTCTTCCTTGCATTTCTGTGGTTACTCTGGTAATTT AAGCTTCTGCTTTGTTTTCCCACTGTGATGGTGGTGCTCTCATTTTATATAGAAGCTTTCAGATTGATTTTTTCTTTATT GCTCTGCTTTTTTGGAAAAATAATTTTCTGATGTATTATACAGATTAAGGAACTATCAAATGTCAAAGAGGAAGTTTATG GTGCTCTCGATTCATATGTTGCCTGGGAATTAGAGTTCCCTTTAATTACTGTAAAAAAGGCACTCAAGACTCTAGAATAC GAACAAGAATGGAAGCGGATAATACAGGTACTTCTAATTTTTAAAAAAGAACTGTATCCTTGTGAATTTAAGATGCTGTT TTCTATACATTTGTCTTTCTTTTAAAATGTAGTGACCCAGTGCTTTGGTATCTGTTTATGCAAATTACATATGGCACTAT AGATAACAAAATGGATGCTAAGCAAAGGTCAAGGAAAGACAATGGGAAGCTATTTCACATTACTCAATGCGTTAGCTGAG GATGACCGACTTGATGAAGCTGAAGAGCTTTGGACCAAGTTATTAATGCAGTACATGGAAAGCTTGCCTCGCAGATTCTT TGATAAAATGATATCTATCTACCGTAAGAGGGGCTTGCATGAGAAGATGTTTGAGGTATTATGATTTGTGTTTGTGTGTT AGTTTAAATTATTAATTCTTTTTATAATAATGTACATTCGATATACCATTTTTTTTTGAATTAGTTTGTTGTTTTACTTT TCTTAGTGCATACTATATAATTGAATGAAATTTTCAAATTCTTGGATTTTAAAGTTCATCTGCTGAAATTTATATTTCAA AAAAGAATAATTATTAGTGATAAAAGATAGTTTGTTATTTTACTTTTCTTAGTGCATGCTATATTGGAATGCAAAAGATG CTTCCAGAACCTGGTATAATTCCTGCTGGGGAAAGGAACTAAAACAATAAACTAACATATTAACTATTTCAGTACATAGA ATTTCTTAAGTATTCAAGTTCAACTATAACGTTAAGTGTCAATTGTACTGAATTTCCTTTTAATAACATTACTGTTAGTG TCTGTCAACTTCACATGCCCTTGTATTAATAAGGGATCAAAATCCTCTGTCTGCATTTGGTGTCTCATTCTTTGTCCCAC CAATAAACTTGTGACATGTCATTTGAAAAACCCCATGTAAGGTTATATCTGTCATATCAATGTATTTTTTTTATTGACAT AAAACAATTTTATTGGCGAGACCGGTAAGAGGAGACCGAATTGGGACAGAAGGTCTTAATCAGTTAATGAGATTATATGA TACTTTGTATGAATTGACTGCAGGCTCAATACATAAAGGATATTTACTTGTTAATTTCTCCCTTAGATATTTGCAGACAT GGAGGAGCTTGGTCTTCGACCTAGTATTTCGGTTGTGTCAATGATTGGAGATGCCTTCAAGGAGCTGGGTATGCTGGACA AATACGAGAAGTTACATATTAAATACCCACCGCCTAAATGGGAATATAGGTACATCAAAGGAAAGCGTGTGAAAATCAGA TTCGAAGATCAGTCCAACCAAGTCAATAAATACACAAGAAAGCATGATAATGTTGAACCTAATTCAGACTTAAAGGAGGA TGATTGGTCTGAAGATGAAGAGACGAGTTCTGAGGTAATTGATGATGAGCAATTCGAACAGGATGCCAATGTAATATGCA TGGAACCTGAACAAATTTCAGATGATTCATTTGAGAGTATCGAAATAGAACCAGTTGTAGATGCATAATGGGAGGAAGAT AATGTAATATCACTGGCTGATAAGGTTCTATTAGTAGTTATTATTGTTAGTTACAGTTAATATAATATCAATGCAATCTG CAAGCCCAAGATGATAAGGTGTAATGTTCTCTTCAGGTGTGATGGTAAGGTGTAATGTTCTCTTTAAGGTGTAATATTGG ATTAAAGGTGTGGGGGGGGGGGGGGGGGGTACTTTGGGTTGAAAGTTTCCTCAACGCATAACTTTGT
CDS sequence (LotjaGi5g1v0118000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCACTGACAGATTTTCCACTACTTATTGCTAAACCATTTGAAGAAATTAAAATACCAACAAGTATACGAAGCAC TGTGGTATGTGCTGCAAAAGGTAAAAGACCTAGATATCCACGAGTTTGGAAGACCCAGAAAAAAATTGGGACCATTTCCA AGGCTGCTAAACTTGTTCAGTCTATTAAGGAACTATCAAATGTCAAAGAGGAAGTTTATGGTGCTCTCGATTCATATGTT GCCTGGGAATTAGAGTTCCCTTTAATTACTGTAAAAAAGGCACTCAAGACTCTAGAATACGAACAAGAATGGAAGCGGAT AATACAGATAACAAAATGGATGCTAAGCAAAGGTCAAGGAAAGACAATGGGAAGCTATTTCACATTACTCAATGCGTTAG CTGAGGATGACCGACTTGATGAAGCTGAAGAGCTTTGGACCAAGTTATTAATGCAGTACATGGAAAGCTTGCCTCGCAGA TTCTTTGATAAAATGATATCTATCTACCGTAAGAGGGGCTTGCATGAGAAGATGTTTGAGATATTTGCAGACATGGAGGA GCTTGGTCTTCGACCTAGTATTTCGGTTGTGTCAATGATTGGAGATGCCTTCAAGGAGCTGGGTATGCTGGACAAATACG AGAAGTTACATATTAAATACCCACCGCCTAAATGGGAATATAGGTACATCAAAGGAAAGCGTGTGAAAATCAGATTCGAA GATCAGTCCAACCAAGTCAATAAATACACAAGAAAGCATGATAATGTTGAACCTAATTCAGACTTAAAGGAGGATGATTG GTCTGAAGATGAAGAGACGAGTTCTGAGGTAATTGATGATGAGCAATTCGAACAGGATGCCAATGTAATATGCATGGAAC CTGAACAAATTTCAGATGATTCATTTGAGAGTATCGAAATAGAACCAGTTGTAGATGCATAA
Protein sequence (LotjaGi5g1v0118000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLALTDFPLLIAKPFEEIKIPTSIRSTVVCAAKGKRPRYPRVWKTQKKIGTISKAAKLVQSIKELSNVKEEVYGALDSYV AWELEFPLITVKKALKTLEYEQEWKRIIQITKWMLSKGQGKTMGSYFTLLNALAEDDRLDEAEELWTKLLMQYMESLPRR FFDKMISIYRKRGLHEKMFEIFADMEELGLRPSISVVSMIGDAFKELGMLDKYEKLHIKYPPPKWEYRYIKGKRVKIRFE DQSNQVNKYTRKHDNVEPNSDLKEDDWSEDEETSSEVIDDEQFEQDANVICMEPEQISDDSFESIEIEPVVDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 290 | 289 | 1.2E-143 | – | |
| PANTHER | 2 | 290 | 289 | 1.2E-143 | – | |
| Gene3D | 44 | 298 | 255 | 4.0E-15 | ||
| ProSiteProfiles | 122 | 156 | 35 | 7.41 | ||
| Pfam | 128 | 149 | 22 | 1.1 | ||
| ProSiteProfiles | 158 | 192 | 35 | 9.164 | ||
| TIGRFAM | 163 | 193 | 31 | 9.7E-5 | ||
| Pfam | 165 | 190 | 26 | 0.0028 | ||
| MobiDBLite | 248 | 284 | 37 | - | – | |
| MobiDBLite | 248 | 262 | 15 | - | – | |
| MobiDBLite | 263 | 283 | 21 | - | – | |
| MobiDBLite | 294 | 313 | 20 | - | – | |
| MobiDBLite | 299 | 313 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0118000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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