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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0146300 |
| Transcript ID | LotjaGi5g1v0146300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G13770.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; TrEMBL-Plants: tr|G7I998|G7I998_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi5g1v0146300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37132685..37135918) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATTCTGCATGAGTTGCTTATGAGTTGCTTAAATCCTATGTGGCAGTCTGGGCCCACCAGAATAGCATTTAAGCGAC CCAAGTAAAGCATTGGAGATGCTCTAATGTGCCTTGTTCGGACGGTTGTCACCTTTCCATGCAAGTTTGAATTGAAACCT TCTACCTCGTCAATCGTCATCTTCCACACTAACTATTCCCTACGCATGCTTCGCGCAAGACATGTCCATATCCATGTCTC ACCTTCCACACACAAGAACTTCATCCAACAACTACCTCTACTATCGTTCCTTTCATACTCTCGACTCCTTCTCAGCACTC TCAGTTTCTCCCCTCATCTTCAACAACCACTTCTACAAATGGCCCTTTGCGGCCACGACATGAAGTTCAAAGGCTACAAC GCACTCTTGAACGAGTGCGTGAGCAAGAGGGCCTTAAGAGAAGGCCAGAGAGTCCATGCCCACATGATCAAAACTCGTTA TCTTCCTTCTGTGTTCCTCAGGACGAGGTTGATCGTGTTGTATACGAAATGTGACTCTTTAAGAGATGCTCGGCACGTGT TCGATGAAATGCCTGAACGGAATGTGGTGTCGTGGACGGCTATGATTTCAGCTTATTCTCAGAGAGGGTATGCCTCTCAA GCCTTGAATCTTTTTGTCCAGATGTTAAGATCAGGTATTCTTGGTTTGCACGAGCTCATGAGAGTGGGTATACCTTTTTC ATAATGCAATTTGAATGCTTGATTTTGTTTTTTAAGTATTGGTTATACGTGGGAGGGGATGTAAGGTTACTTGTTACGCC CAAGTTGATAATTTAGACTTTTTTAGTATGTATAATAATGGTGAAGATTGAAAATGTAATCTCATGTGAACTATCTAAAC TCCCATTACTGGCACAATCCTAGTGGCTTGACAATTTAGAATTCAAATGTTAAGATTCTTGATTACCAATAACTAATGTT GATAGAATCTTCATTGAATTTGAAGAACCTATCGAGCCTGTAATAATCATGTTGTGAGGAGAAACTAAAAGATGCAGATT GTATTTTCTTTTCTGAATGTATTGGCTTCAGGATTTCTATTTTGATATTTTTGGGTTCCTTTTGAGTTTTGTCCCACTGG TTTCTGTGTGCTGATGATATGTATGCCTTTCTGCAGGGACAGAACCTAATGAGTTCACTTTTGCTACAGTGCTTACGTCA TGTACAAGTTCTCTGGATTCCATGCTAGGGAGGCAAATCCACTCTCTTATCATAAAATCAAATTATGATGCCCATGTTTA TGTAGGAAGCTCACTCCTTGACATGTATGCCAAAGATGGTAAAATTCATGAAGCTCGAGGCATTTTTGAATGTTTGCCAG AAAGAGATGTTGTTTCCTGTACTGCTATAATCTCTGGATATGCTCAACTGGGTCTGGATGAAGAGGCATTGGATCTTTTT CGCCAGTTGCGAGGAGAAGGAATGCAATCAAATTATGTTACTTATGCTAGTGTTTTAACTGCCCTTTCTGGGCTTGCTTC TCTAGATCATGGCAAGCAAGTGCACAACCATGTTCTTCGCTCTGAAGTTCCCTCATATGTAGTTCTTCAAAACTCTTTGA TTGACATGTACTCAAAATGTGGAAACCTCACTTACTCAAGAAGGATATTTGATACCATGCAGGAGAGAACTGTTATGTCT TGGAATGCAATGCTGGTCGGGTATGGAAAACATGGAGAGGGAAGAGAAGTGCTTGAGCTGTTTACTTTAATGAGAGAAGA AAACGAAGTAAAACCTGACGGTGTCACAATGTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGATTGGAAGACAGAGGAC TTGATATTTTTTACGATATGACCAGTGGAAAAATTGGAGTTGAGCCAAAGAAGGAGCACTATGGGTGTGTTGTTGATTTG CTTGGCCGTGCCGGTCGAGTAGAAGAAGCGTTTGAATTCATAAAAAAGATGCCTTTTGAACCAACAGCTGCAATATGGGG TTCCCTTTTAGGTGCTTGTAGTGTTCATTCAAATGTTGACATTGGTGTATTTGTGGGTCATCGGCTTCTAGAAATTGAGC CTGGAAATGCTGGAAATTATGTTATTCTGTCTAACTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGG GACATGATGTTGAAGAAGGCAGTGATGAAAGAGCCTGGAAGAAGCAGGATTGAGCTTGATCAAGTACTTCATACTTTCCA TGCTAGTGATCGTTCTCATCCAAGAAGAGAAGAGGTCTATATTAAAGTGAAGGAATTATCAGTTAGATTTAAAGAAGCTG GTTATGTTCCTGATTTGAGTTGTGTTTTACACGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTCGGCCATAGTGAA AAGTTGGCCTTGTCTTTTGGACTAATTTCTACTCCAGAAGGTGTGCCAATCCGTGTCATTAAAAATCTCCGTATTTGTGT TGACTGCCATAATTTTGCTAAATATATCTCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATC AAATTGTTGGAGGAAAATGTTCCTGTGGAGATTACTGGTGAGAAGATTTTGATAGATAGCACTTAATTAACATCTAAGGC GCATGAAAAAAAGGCTCTTGATCTTCGGTCTTTGATTTGTGTTAGGACTGAAATTTGGCTTGCAATTAAGTAGTAGTGTA GTATGAAATTCCTCCAAGAAAAATGGACACAGAGAAATTAATGAACAAGGAAGTGTCAACTGACCAATAGTGCAATGTAA TTTGAGAGGATCCAAAACAGCATGTATTAAAATGCTTCACAATGCTCCTTTGTCTTCTCTGCTGTGGATTTTCATGTTAT TCTCTTCACAATGCTCATGGCTTCACAGCCTGTAGCTCTTTCATCTCTGCCAGGGCTTCGCCTATTGTTCTCTTTTGCTC TTGGGGAACTCATCTAAGATGTACTCTAGGTATTCATATATATTCTCGAGTTTGTCCATTTTGATCTTTGATTTTCTTAA TGTGTTACATTTGAAAGCTTCCTCGGTAAGCGATGTTGTGATAGCGAAGACTTGGGTTCTTTTATTGAATGTTCTACATA GGATTTTTTGTCACGAGTATATTGTCAATGAAGTTGTTGAACTTGAAATGTTGCTTATTTTGCTGCTTTTTGTCATAAAT TAGAGTATTTTAATTTTTTTCAATTAAGGTTCTA
CDS sequence (LotjaGi5g1v0146300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCCTTGTTCGGACGGTTGTCACCTTTCCATGCAAGTTTGAATTGAAACCTTCTACCTCGTCAATCGTCATCTTCCA CACTAACTATTCCCTACGCATGCTTCGCGCAAGACATGTCCATATCCATGTCTCACCTTCCACACACAAGAACTTCATCC AACAACTACCTCTACTATCGTTCCTTTCATACTCTCGACTCCTTCTCAGCACTCTCAGTTTCTCCCCTCATCTTCAACAA CCACTTCTACAAATGGCCCTTTGCGGCCACGACATGAAGTTCAAAGGCTACAACGCACTCTTGAACGAGTGCGTGAGCAA GAGGGCCTTAAGAGAAGGCCAGAGAGTCCATGCCCACATGATCAAAACTCGTTATCTTCCTTCTGTGTTCCTCAGGACGA GGTTGATCGTGTTGTATACGAAATGTGACTCTTTAAGAGATGCTCGGCACGTGTTCGATGAAATGCCTGAACGGAATGTG GTGTCGTGGACGGCTATGATTTCAGCTTATTCTCAGAGAGGGTATGCCTCTCAAGCCTTGAATCTTTTTGTCCAGATGTT AAGATCAGGGACAGAACCTAATGAGTTCACTTTTGCTACAGTGCTTACGTCATGTACAAGTTCTCTGGATTCCATGCTAG GGAGGCAAATCCACTCTCTTATCATAAAATCAAATTATGATGCCCATGTTTATGTAGGAAGCTCACTCCTTGACATGTAT GCCAAAGATGGTAAAATTCATGAAGCTCGAGGCATTTTTGAATGTTTGCCAGAAAGAGATGTTGTTTCCTGTACTGCTAT AATCTCTGGATATGCTCAACTGGGTCTGGATGAAGAGGCATTGGATCTTTTTCGCCAGTTGCGAGGAGAAGGAATGCAAT CAAATTATGTTACTTATGCTAGTGTTTTAACTGCCCTTTCTGGGCTTGCTTCTCTAGATCATGGCAAGCAAGTGCACAAC CATGTTCTTCGCTCTGAAGTTCCCTCATATGTAGTTCTTCAAAACTCTTTGATTGACATGTACTCAAAATGTGGAAACCT CACTTACTCAAGAAGGATATTTGATACCATGCAGGAGAGAACTGTTATGTCTTGGAATGCAATGCTGGTCGGGTATGGAA AACATGGAGAGGGAAGAGAAGTGCTTGAGCTGTTTACTTTAATGAGAGAAGAAAACGAAGTAAAACCTGACGGTGTCACA ATGTTGGCTGTGTTATCTGGCTGCAGTCATGGAGGATTGGAAGACAGAGGACTTGATATTTTTTACGATATGACCAGTGG AAAAATTGGAGTTGAGCCAAAGAAGGAGCACTATGGGTGTGTTGTTGATTTGCTTGGCCGTGCCGGTCGAGTAGAAGAAG CGTTTGAATTCATAAAAAAGATGCCTTTTGAACCAACAGCTGCAATATGGGGTTCCCTTTTAGGTGCTTGTAGTGTTCAT TCAAATGTTGACATTGGTGTATTTGTGGGTCATCGGCTTCTAGAAATTGAGCCTGGAAATGCTGGAAATTATGTTATTCT GTCTAACTTATATGCTTCAGCAGGAAGATGGGAAGATGTAAGATCACTAAGGGACATGATGTTGAAGAAGGCAGTGATGA AAGAGCCTGGAAGAAGCAGGATTGAGCTTGATCAAGTACTTCATACTTTCCATGCTAGTGATCGTTCTCATCCAAGAAGA GAAGAGGTCTATATTAAAGTGAAGGAATTATCAGTTAGATTTAAAGAAGCTGGTTATGTTCCTGATTTGAGTTGTGTTTT ACACGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTCGGCCATAGTGAAAAGTTGGCCTTGTCTTTTGGACTAATTT CTACTCCAGAAGGTGTGCCAATCCGTGTCATTAAAAATCTCCGTATTTGTGTTGACTGCCATAATTTTGCTAAATATATC TCAAAGATTTATGGTAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCAAATTGTTGGAGGAAAATGTTCCTGTGG AGATTACTGGTGA
Protein sequence (LotjaGi5g1v0146300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLVRTVVTFPCKFELKPSTSSIVIFHTNYSLRMLRARHVHIHVSPSTHKNFIQQLPLLSFLSYSRLLLSTLSFSPHLQQ PLLQMALCGHDMKFKGYNALLNECVSKRALREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLRDARHVFDEMPERNV VSWTAMISAYSQRGYASQALNLFVQMLRSGTEPNEFTFATVLTSCTSSLDSMLGRQIHSLIIKSNYDAHVYVGSSLLDMY AKDGKIHEARGIFECLPERDVVSCTAIISGYAQLGLDEEALDLFRQLRGEGMQSNYVTYASVLTALSGLASLDHGKQVHN HVLRSEVPSYVVLQNSLIDMYSKCGNLTYSRRIFDTMQERTVMSWNAMLVGYGKHGEGREVLELFTLMREENEVKPDGVT MLAVLSGCSHGGLEDRGLDIFYDMTSGKIGVEPKKEHYGCVVDLLGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACSVH SNVDIGVFVGHRLLEIEPGNAGNYVILSNLYASAGRWEDVRSLRDMMLKKAVMKEPGRSRIELDQVLHTFHASDRSHPRR EEVYIKVKELSVRFKEAGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLISTPEGVPIRVIKNLRICVDCHNFAKYI SKIYGREVSLRDKNRFHQIVGGKCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 84 | 211 | 128 | 1.0E-25 | ||
| ProSiteProfiles | 93 | 127 | 35 | 7.432 | ||
| PANTHER | 97 | 208 | 112 | 7.6E-106 | – | |
| ProSiteProfiles | 128 | 158 | 31 | 6.763 | ||
| Pfam | 158 | 205 | 48 | 1.0E-12 | ||
| ProSiteProfiles | 159 | 193 | 35 | 12.047 | ||
| TIGRFAM | 161 | 195 | 35 | 1.9E-6 | ||
| ProSiteProfiles | 194 | 228 | 35 | 5.229 | ||
| Gene3D | 212 | 328 | 117 | 1.4E-18 | ||
| PANTHER | 213 | 319 | 107 | 7.6E-106 | – | |
| ProSiteProfiles | 229 | 259 | 31 | 6.84 | ||
| Pfam | 260 | 306 | 47 | 2.4E-7 | ||
| ProSiteProfiles | 260 | 294 | 35 | 10.665 | ||
| TIGRFAM | 262 | 293 | 32 | 1.2E-4 | ||
| ProSiteProfiles | 295 | 329 | 35 | 6.763 | ||
| PANTHER | 312 | 533 | 222 | 7.6E-106 | – | |
| ProSiteProfiles | 330 | 360 | 31 | 7.476 | ||
| Pfam | 335 | 360 | 26 | 0.019 | ||
| Gene3D | 335 | 570 | 236 | 2.2E-36 | ||
| ProSiteProfiles | 361 | 395 | 35 | 9.514 | ||
| TIGRFAM | 364 | 397 | 34 | 3.7E-6 | ||
| Pfam | 364 | 392 | 29 | 5.2E-6 | ||
| ProSiteProfiles | 397 | 431 | 35 | 6.873 | ||
| ProSiteProfiles | 434 | 468 | 35 | 7.454 | ||
| Pfam | 437 | 461 | 25 | 0.0043 | ||
| TIGRFAM | 438 | 461 | 24 | 0.002 | ||
| ProSiteProfiles | 500 | 534 | 35 | 7.717 | ||
| Pfam | 504 | 530 | 27 | 0.61 | ||
| Pfam | 536 | 658 | 123 | 1.8E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0146300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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