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LotjaGi5g1v0163200.2

Overview

Field Value
Gene ID LotjaGi5g1v0163200
Transcript ID LotjaGi5g1v0163200.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:41825886..41832529) extracted from Lotus japonicus Gifu genome v1.2.

GATCATTCAGCATCCTTTATTATCACTGATGAGAAATGCAAGAAAACAACATCAAAGAAGATCGTTTCTGTTGTGTCACC CCATAAGAACAAACGCAACCCTTCTTCTGCAGCTGGCTCAGTTAGATTTATTCAACTTTCAAATCTTCTTCTTTTCTTCT TCACTTTCTTTTAGGTTGAATTTTGATGCTAATAGTATAAAAAGTGAGTATCTTTGGTTGATGCATGCAGAGAAAGACTC CAATGACTGTGACAGAGAAGATACTGGCTGGAGCTTCAGAGAAAAGTGAGGTGAAGGCAGGGGAAAACGCGTGGGTAAAT GTTGATGTTTTGATGATCAATGATATCACTTGCCCTGGTGTGTCTGCTACCTTCAAGAAAGAGTTCGGCAACACTGCTAA GGTGTGGAAAATAATTTCTCACCACCTTCACCTTCACTTTCACCTAATAGAGAAATGAGTGATGATACACAAATATACAA TTTCTTGTGGACATCCATCACACAAACCACTTTGTAGTGACTTTTAACCCTAGTAACATTTTGTGAAGGTTAAATAGCCT CGACAGAGTGGTAAGTCTAAAAGGTTCACATAATATATGTTTTTTAATCATTTTCGTAGAAAAATATAGGAGTAGATTAG AGATATGCAGTAGGGGGAAAGGAATATAAGAAGAGGAAATGAAAAACTTAAACAGAAGCCTGTTCCTAGGAGGGAATGTA AAATACCTTGTAAATTGATAGATGAAAAGGAATTTAAAAAGGGTCAAATGCATTAGGCAATGATGTTTTAAGAAAGGTTT TGTTTATCTGGATCAAGAAAAAATGGCTCAATAAACTAAAAGTTTCTCCGTAAATTAGTTTTAACATATAAGAACTATAT TACAAATAATATTTACTAGAATGTTAGTTATAAAAACATGATTTATTTATTGGTGGATTAATTTTTAATATGGTCTACCT TAAAACTGTCATTTAATTGAATAGTGAAAAGAGATTTCAAACACCAACAATTGTAAGAACGAGTCGCGCTCGTTCTAGTG GCAGATTTGATTCGGCTTAAGATATTGAGTTTAAATTTGTGTATGAAAAGAAAAACCCTCATAGAACTAGGACCATAAAG ATATGCATTCCTAATCTCTTTAGATTTCAATTAGTATATTCTGACACCGTAAATAACTTGGTCCAATCTCATCCTTTCAA ATTTTTTAGTAATTTTTCTTTGTAAATTTTAAGTTTATAATCTGATTCATTGAAAGTAAGTCCATATTAACTACAGTAGA GATCAAAAGTGTAAATAAGTCTGTATTGTATAAAATTTGACAAAAAATGCCAAATAGTTTTTAATAAAATTTGAGTCAAC CTTAAATTATACAAAAAAAATTATTTACCAAAAAAATGAAAAAAAAATTCTTCTCTACTATTAGAGTAAAAAGACTAGTC TGTAATTCAAATAAGTTTTATAAATAAGGTGATTTTTTTTCAGAACCCTTTTTATACATTTTTTTTCCCATCATATCTCT TTTTCACCAACAATTGTTAATCAAATTGTACATACCTAATTCTCTTTACACAAAACCACCAGGTCGAGTTTTGTGTATAA AAAATCTGACGATAAAACTAAAACTAAGAAATATTGTCATTCTAACCACAAATGAAGCCAAAGAAAGAAAAAGTTTACAA AAAGGTCGAGACAAAAGAGCCGCAACAATTTCTTGTTGTCAGCTCACTTGGGCAAGCTTGAGGGCCCAAACCCAAATCTT ATTAGCCTAATTGAATAATTAGGGGCTCTTGACGAAAAATAATAATTAGGGATTGAGATTATTTGTATATTTTTAATTAA TAACAATCACTTGTCTTTGTTTATTTTATTTTTTATTCTATTTCTTTTAGTTTTCCTCTTGTAAATAAAAACCAATAAAT TGTTGATTTAGTAGTAAACAAGCAATCCCATAAAAATGAAAGCACAAGTTCAAATACTAGAAATACATTTTTTGGGAGGA AGGTGTAACTATTTTGGCAAATTCAGTGGAAGAAATTTTTTTTGTTAATTTGTCCTAGCACTAAAACTTTGAGATAGGAC AGTCTTGTTTTTACCCAATGCATACATGTTAATAAGGGTGATCTTTTAATTTTGTCTATACAAAACTTCTTAACTTTGTG AATGTTTTGAGGGTTTGAAGGTTTGGGACCGTGAAAAGATTGTTGTTATCCCTGATCATTACATATTCACAAATGACGAA CGTGCACACCGCAATGTGGATACTGCAAGAGACTTTTGCACAGAGCAAGATATTAAGTACTTCTATGATATTCAAGATCG CACTAATTTCAGGGTATGACTTCTATTTAAATGATATTAGTCTTGGCTTTTTTAACATGTATATGAATGGGTTTTTTTAC TAATTAACTAGAGTTAGCTTTTCATCATGTACTATATGATACGAGTCTTATTCACCTTGTAATGTGATTAGTATATGATA AATCAATTGCAGTCAACAAACTTTGCTGTTCTTAGAAGTGCATTCATAGGTTCAACCTAGAATTTCAAAATCCATTTCAG AATCAAATGAATTCCTTTAATCAGAAAGGTACAGAACAAGCCTATTTGGCATCTGCTATTGGCATTGTCAACTCCAATCC CATAATTACCATTTTGGGTATTTTGGCACAACCACTCCAAAGTTCTGATTCCGGTTGGCACCAAGACTCTGGATAATCTC ATCATCTTACACATGGTCAACATAATATGCTCATTTGCATTCCATATGAAAGTGAGCATATACGTGTGCGTTTAGATACC AGTTGAGTTAACGTGAAAGCACATTCATCCCAATCGATAAGAAGAGCTTTGTTCACTTCTTGCCTCAAAAGTGGGTGCTA ACGCCCCGTCAGCACCAGCATCAATGAATATTCAAACCTCGTATAGAAGTCCAAAAACTCTCACTTTTACTCTTTCTAAT CTCTTGCATGTTCTTGGCTTATCTAAGAACCTTCTTAGTGGGCCTTAATTTACAAAGGAGCACAATGTTCTGTTTTTAAT TTCATTCTAATGTATGGTTTGTTAAATCTCGTAATCCCAATGCTTAAAGACAAGTTTAAGAATGGCTTGTGTATCTTTGA AGGCCTTTCATTCCCTCCAAAGGTTCAAGATATCATTCTCTATCGGCTCATCTGCATGATGGTCAATAATCTTTGAATTG TATGAAGAGTCCGTTTGGATATGGACTAAGAGTTTATTAGAGCTTATCTACTAAAAAAGCACTAGATAAGCTTCAATAAG TGCTTTTTGGTTTGCATCCAAACGGGTTGTAGGACTTTCTGTAATTGTTCATGTTGGTAACTTAATTCCACCTTACTCCT GTGGCATGCTAGTTTAGGCTATGCCTCTTTACTAATAGTCAAGAAAGTCTTATCTTATTGCAACATTGCATTTTTCAAAC AGTAAAATTGACATACTCTAGTTTCCAAAAAGTGCTCTAGAATAGGGGTGCTAGTCTGGTTGCATGGCAAAAATGCTCTA GTTTCCATTTTCTCCTTCTGACTACTACATTTGATACCCTCCTATGTGAATTGTGAACAACACAAGTACTTCCATCTAAA GGAAGGTTTTCAATATTAAGAGGCCTTTAGTCAAATGATTAAGCCAGAAACAATGAGAAATGTCTTGCCCCTAGGCTCAT CTAAGTAATGGTCAATTAATCAAATTCATGTGAGTAATGCATTTCCAAATGAGGAGCTTCATGAAGATGTTTATGAAATA AAGTTTTATTGCTTAAAATAAAATAATGTTTTGTATAAATATTGACTACAAAGTAATTTATATCGTGCAGGCTAACCCTG ATTATAAAGGTGTTTGTCACATTGCTCTAGCACAGGAAGGTCATTGCAGACCTGGAGAGGTGACTTTTGTTAACATAGCT CCTCCTGGCATTAAAATTTAAAATCTTCAGTTTTCAAAACTTCTCTGAATTCTGATCACTTGGCATGTGATAGCAGGTCT TGCTTGGAACTGATTCTCACACAACATCAGCCGGAGCATTTGGTCAATTTGCTACTGGAGTTGGGAACACTGATGCTGCT TTTATATTAGGGACAGGGAAGATCTTACTCAAGGCATGTACACACATGTTGTCATTTAGTTATTTGTGAACATATTTGAA GACTTTGTGTTGTAAACTTTCATGAAGTTTGTTTCGTTCCAGAAAATTCTTGTAGCGCGTGTTTGGATCAACGTTCTCAC AATTAATTTTGGTGAAATTGAAATTGGTAAAATTAATTATAGTAAAAGTGAGTTATGTTTAAATACATTTATGAATAAGT GATTTTTGTCGGGTAGTGTTGAGAAAGTCAGTTGTAAAATCTTACAATTGATTATGTTCAATGCAGAAGCTACTCTCTCT AGCTTGTACCATAATATTGATTTTAGATCTGAAATCAATTCTCCAACATGATTTTATCCTGAATTGATTTTACTCTACTA GAATTGATTCTGGAGTTTCGATGAATTGCTTGATCACACTTGAAAATGCAGGTGCCTCCGACATTGAGATTTGTACTGGA TGGTGAAATGCCTAACTATTTGCTTGCGAAGGATCTAATTTTGGATGTAGGTGATGGGTTCCTCTGACTAATTTTTTCCA TTTGAATTAAATTTGGTTAGTCCAAGTTATGCGACACAAGTAAATTATAACACTATTTCTATTGTTATGTGAAAACACTA ACCATCATCCAGATCATTGGTGAAATTTCAATGTCTGGTGCAACATATAAAACTATGGAGTTTGTTGGGACCACTATTGA AAGCTTAAGTGTATGTATACTTTAACTTTTTGGCCGTTTTCTTTCTCTATCTTAATTCCATTTGCACAAGTGTAAGATCT CTGAATTGTTGTGTTGAAGATGGAAGAGAGGATGACACTGTGCAACATGGTTGTAGAAGCTGGAGGGAAAAATGGTATTG TTGCTGCTGATCAGAAAACATACCAATACCTTGAGGTTGTTTGGGGTTAATCAGTGCCTACTATACTTTAATCAGTTTCA TTATTTCTGTGTTTTCTTCTCTCAAATTTCCATGGAATTTATATTGCATAGTTTCGTTGCACAGGATAAGACATCTGCAC CATTTGAACCAGTTTATAGTGATGAGAAAGCAAGGCAAGTAATCTGTTTCAGAATAGATAATACATTTCCACCTTTTGCT TTCTCTTATGTGACTCTCTTACAACTGATTGTGGTTTTCCTGTTGATGTGCTAGATTTCTAGCCCAGTATAGATTTGATG TATCAAAGATGGAACCATTGGTGGCAAAGGTTGTTTAACTTAGACTTAAATCATACTTTTTTATTTCACTTTGCCATGAA AATGTAATGATTCTTGTATTTTAAAAAACTTTGTCTAATTCCTGATGTAATGTAATATGTTTGAACCACTCTACGCAGCC ACATTCCCCTGATAATCGCGCTTTGGCAAGAGAGTGCAGCAATGTGAAAATTGACAGAGTATATATTGGATCATGCACTG GTGGAAAGACTGAAGATTTTATGGCTGCAGCTAAAGTTTTCTTAGCTAGTGTATGTCTATTATAATTTTCTTTCCCTTTC TTGTTAGCATGGAAATGCATACATTTTTTAGATAGAAAACCATCAAGGCTGGACTCTAGGTGACCTAAACTAGTTACCTC TTACCCATGTCACATAGTTAAATAAGCCCATAGAGACACTTTGATGTTCTCACAAAAATTGGAATTGAGGACTAACTATT TTAATCCCACCTGTTATGAAAGATTCCAGTAAAAATCCATGAAGTATAAAAACAAGCTTTGAATATTATATATGTTACAG TATTGTAAGCCATCTCAAAATGAAGTTAGTACACATAAACATAACATATGAGAGACATTTTGAGCATATGATCTAAGTAG GATTTATTTGAGCTTCTTGTTTAGGGTGCATGTTTCTGGAGAAAAACATGTTAATGTAGTGTGTATCTTTTTTTCAGCAT TGTAAACATTAGTAACTTTCTTTCTTCTTTTTTTCCTCTCCTTTTAACATCATGAAATTGTTCCACTATAGGGAAAAACT GTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGTGAATGAGACTGTTTTTCCAGTTTCATAAGTACTTA TCACCAAAATCGTTGTTTTAGAACTCAATTAATGAATCTTTCAGGTTTGGATGGACTTATACACGCTTGAGGTACCTGGC TCAGGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATACACCTGCAAGTCCTAGTTGTGCAGCATGTAT GGGTGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTAAAACTCAAATACTATTCCATTGGAAAAACTATTT CCCACTTTCTGGAATGACTATAGATAAATGTAGCACCAGAATTTTTACAGAACAACTGTGTTTTGTTTTGATTTTGATAT AACTAATGAAAGGACTCTTAATGCAGGTTTGCGTCTCAACAACAAATAGAAATTTCCCGGGTCGAATGGGGCACAAGGAA GGTCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCATTAACTGGTTTCGTGACAGACCCCAGGAAATTCTT CTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0163200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGTGACAGAGAAGATACTGGCTGGAGCTTCAGAGAAAAGTGAGGTGAAGGCAGGGGAAAACGCGTGGGTAAATGT TGATGTTTTGATGATCAATGATATCACTTGCCCTGGTGTGTCTGCTACCTTCAAGAAAGAGTTCGGCAACACTGCTAAGG TTTGGGACCGTGAAAAGATTGTTGTTATCCCTGATCATTACATATTCACAAATGACGAACGTGCACACCGCAATGTGGAT ACTGCAAGAGACTTTTGCACAGAGCAAGATATTAAGTACTTCTATGATATTCAAGATCGCACTAATTTCAGGGCTAACCC TGATTATAAAGGTGTTTGTCACATTGCTCTAGCACAGGAAGGTCATTGCAGACCTGGAGAGGTCTTGCTTGGAACTGATT CTCACACAACATCAGCCGGAGCATTTGGTCAATTTGCTACTGGAGTTGGGAACACTGATGCTGCTTTTATATTAGGGACA GGGAAGATCTTACTCAAGGTGCCTCCGACATTGAGATTTGTACTGGATGGTGAAATGCCTAACTATTTGCTTGCGAAGGA TCTAATTTTGGATATCATTGGTGAAATTTCAATGTCTGGTGCAACATATAAAACTATGGAGTTTGTTGGGACCACTATTG AAAGCTTAAGTATGGAAGAGAGGATGACACTGTGCAACATGGTTGTAGAAGCTGGAGGGAAAAATGGTATTGTTGCTGCT GATCAGAAAACATACCAATACCTTGAGGATAAGACATCTGCACCATTTGAACCAGTTTATAGTGATGAGAAAGCAAGATT TCTAGCCCAGTATAGATTTGATGTATCAAAGATGGAACCATTGGTGGCAAAGCCACATTCCCCTGATAATCGCGCTTTGG CAAGAGAGTGCAGCAATGTGAAAATTGACAGAGTATATATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTATGGCT GCAGCTAAAGTTTTCTTAGCTAGTGGAAAAACTGTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGGAT GGACTTATACACGCTTGAGGTACCTGGCTCAGGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATACAC CTGCAAGTCCTAGTTGTGCAGCATGTATGGGTGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTTTGCGTC TCAACAACAAATAGAAATTTCCCGGGTCGAATGGGGCACAAGGAAGGTCAGGTATATCTTGCTTCCCCATATACTGCAGC AGCATCTGCATTAACTGGTTTCGTGACAGACCCCAGGAAATTCTTCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0163200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTVTEKILAGASEKSEVKAGENAWVNVDVLMINDITCPGVSATFKKEFGNTAKVWDREKIVVIPDHYIFTNDERAHRNVD TARDFCTEQDIKYFYDIQDRTNFRANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTTSAGAFGQFATGVGNTDAAFILGT GKILLKVPPTLRFVLDGEMPNYLLAKDLILDIIGEISMSGATYKTMEFVGTTIESLSMEERMTLCNMVVEAGGKNGIVAA DQKTYQYLEDKTSAPFEPVYSDEKARFLAQYRFDVSKMEPLVAKPHSPDNRALARECSNVKIDRVYIGSCTGGKTEDFMA AAKVFLASGKTVKVPTFLVPATQKVWMDLYTLEVPGSGGKTCSQIFEEAGCDTPASPSCAACMGGPKDTYGRLNEPKVCV STTNRNFPGRMGHKEGQVYLASPYTAAASALTGFVTDPRKFF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43822
1 442 442 9.3E-301 –
PANTHER
PTHR43822:SF6
1 442 442 9.3E-301 –
Gene3D
G3DSA:3.30.499.20
2 280 279 1.5E-94 –
TIGRFAM
TIGR01343
2 439 438 2.8E-127
IPR006251
SUPERFAMILY
SSF53732
2 441 440 1.12E-119
IPR036008
Pfam
PF00330
19 292 274 1.3E-53
IPR001030
CDD
cd01583
29 435 407 0.0
IPR033941
PRINTS
PR00415
124 137 14 4.3E-16
IPR001030
PRINTS
PR00415
138 153 16 4.3E-16
IPR001030
PRINTS
PR00415
200 213 14 4.3E-16
IPR001030
PRINTS
PR00415
214 227 14 4.3E-16
IPR001030
Gene3D
G3DSA:3.30.499.10
283 441 159 6.2E-52
IPR015931
Pfam
PF00330
297 433 137 1.5E-24
IPR001030

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003861
Molecular function 3-isopropylmalate dehydratase activity Catalysis of the reaction: (2R,3S)-3-isopropylmalate = (2S)-2-isopropylmalate.
Subterm of
GO:0008652
Biological process Cellular amino acid biosynthetic process The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
Subterm of
GO:0016836
Molecular function Hydro-lyase activity Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
Subterm of
GO:0051539
Molecular function 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0163200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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