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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0163200 |
Transcript ID | LotjaGi5g1v0163200.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:41830576..41832529) extracted from Lotus japonicus Gifu genome v1.2.
CACTATTTCTATTGTTATGTGAAAACACTAACCATCATCCAGATCATTGGTGAAATTTCAATGTCTGGTGCAACATATAA AACTATGGAGTTTGTTGGGACCACTATTGAAAGCTTAAGTGTATGTATACTTTAACTTTTTGGCCGTTTTCTTTCTCTAT CTTAATTCCATTTGCACAAGTGTAAGATCTCTGAATTGTTGTGTTGAAGATGGAAGAGAGGATGACACTGTGCAACATGG TTGTAGAAGCTGGAGGGAAAAATGGTATTGTTGCTGCTGATCAGAAAACATACCAATACCTTGAGGTTGTTTGGGGTTAA TCAGTGCCTACTATACTTTAATCAGTTTCATTATTTCTGTGTTTTCTTCTCTCAAATTTCCATGGAATTTATATTGCATA GTTTCGTTGCACAGGATAAGACATCTGCACCATTTGAACCAGTTTATAGTGATGAGAAAGCAAGGCAAGTAATCTGTTTC AGAATAGATAATACATTTCCACCTTTTGCTTTCTCTTATGTGACTCTCTTACAACTGATTGTGGTTTTCCTGTTGATGTG CTAGATTTCTAGCCCAGTATAGATTTGATGTATCAAAGATGGAACCATTGGTGGCAAAGGTTGTTTAACTTAGACTTAAA TCATACTTTTTTATTTCACTTTGCCATGAAAATGTAATGATTCTTGTATTTTAAAAAACTTTGTCTAATTCCTGATGTAA TGTAATATGTTTGAACCACTCTACGCAGCCACATTCCCCTGATAATCGCGCTTTGGCAAGAGAGTGCAGCAATGTGAAAA TTGACAGAGTATATATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTATGGCTGCAGCTAAAGTTTTCTTAGCTAGT GTATGTCTATTATAATTTTCTTTCCCTTTCTTGTTAGCATGGAAATGCATACATTTTTTAGATAGAAAACCATCAAGGCT GGACTCTAGGTGACCTAAACTAGTTACCTCTTACCCATGTCACATAGTTAAATAAGCCCATAGAGACACTTTGATGTTCT CACAAAAATTGGAATTGAGGACTAACTATTTTAATCCCACCTGTTATGAAAGATTCCAGTAAAAATCCATGAAGTATAAA AACAAGCTTTGAATATTATATATGTTACAGTATTGTAAGCCATCTCAAAATGAAGTTAGTACACATAAACATAACATATG AGAGACATTTTGAGCATATGATCTAAGTAGGATTTATTTGAGCTTCTTGTTTAGGGTGCATGTTTCTGGAGAAAAACATG TTAATGTAGTGTGTATCTTTTTTTCAGCATTGTAAACATTAGTAACTTTCTTTCTTCTTTTTTTCCTCTCCTTTTAACAT CATGAAATTGTTCCACTATAGGGAAAAACTGTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGTGAATG AGACTGTTTTTCCAGTTTCATAAGTACTTATCACCAAAATCGTTGTTTTAGAACTCAATTAATGAATCTTTCAGGTTTGG ATGGACTTATACACGCTTGAGGTACCTGGCTCAGGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATAC ACCTGCAAGTCCTAGTTGTGCAGCATGTATGGGTGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTAAAAC TCAAATACTATTCCATTGGAAAAACTATTTCCCACTTTCTGGAATGACTATAGATAAATGTAGCACCAGAATTTTTACAG AACAACTGTGTTTTGTTTTGATTTTGATATAACTAATGAAAGGACTCTTAATGCAGGTTTGCGTCTCAACAACAAATAGA AATTTCCCGGGTCGAATGGGGCACAAGGAAGGTCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCATTAAC TGGTTTCGTGACAGACCCCAGGAAATTCTTCTAG
CDS sequence (LotjaGi5g1v0163200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGCAACATATAAAACTATGGAGTTTGTTGGGACCACTATTGAAAGCTTAAGTATGGAAGAGAGGATGACACT GTGCAACATGGTTGTAGAAGCTGGAGGGAAAAATGGTATTGTTGCTGCTGATCAGAAAACATACCAATACCTTGAGGATA AGACATCTGCACCATTTGAACCAGTTTATAGTGATGAGAAAGCAAGATTTCTAGCCCAGTATAGATTTGATGTATCAAAG ATGGAACCATTGGTGGCAAAGCCACATTCCCCTGATAATCGCGCTTTGGCAAGAGAGTGCAGCAATGTGAAAATTGACAG AGTATATATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTATGGCTGCAGCTAAAGTTTTCTTAGCTAGTGGAAAAA CTGTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGGATGGACTTATACACGCTTGAGGTACCTGGCTCA GGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATACACCTGCAAGTCCTAGTTGTGCAGCATGTATGGG TGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTTTGCGTCTCAACAACAAATAGAAATTTCCCGGGTCGAA TGGGGCACAAGGAAGGTCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCATTAACTGGTTTCGTGACAGAC CCCAGGAAATTCTTCTAG
Protein sequence (LotjaGi5g1v0163200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGATYKTMEFVGTTIESLSMEERMTLCNMVVEAGGKNGIVAADQKTYQYLEDKTSAPFEPVYSDEKARFLAQYRFDVSK MEPLVAKPHSPDNRALARECSNVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKTVKVPTFLVPATQKVWMDLYTLEVPGS GGKTCSQIFEEAGCDTPASPSCAACMGGPKDTYGRLNEPKVCVSTTNRNFPGRMGHKEGQVYLASPYTAAASALTGFVTD PRKFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 83 | 83 | 2.1E-26 | – | |
PANTHER | 1 | 245 | 245 | 9.2E-159 | – | |
PANTHER | 1 | 245 | 245 | 9.2E-159 | – | |
SUPERFAMILY | 2 | 244 | 243 | 1.12E-70 | ||
Pfam | 3 | 236 | 234 | 7.8E-44 | ||
PRINTS | 3 | 16 | 14 | 2.0E-6 | ||
PRINTS | 17 | 30 | 14 | 2.0E-6 | ||
Gene3D | 86 | 244 | 159 | 1.4E-52 | ||
PRINTS | 174 | 187 | 14 | 2.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0163200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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