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LotjaGi5g1v0163200.4

Overview

Field Value
Gene ID LotjaGi5g1v0163200
Transcript ID LotjaGi5g1v0163200.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:41830576..41832529) extracted from Lotus japonicus Gifu genome v1.2.

CACTATTTCTATTGTTATGTGAAAACACTAACCATCATCCAGATCATTGGTGAAATTTCAATGTCTGGTGCAACATATAA AACTATGGAGTTTGTTGGGACCACTATTGAAAGCTTAAGTGTATGTATACTTTAACTTTTTGGCCGTTTTCTTTCTCTAT CTTAATTCCATTTGCACAAGTGTAAGATCTCTGAATTGTTGTGTTGAAGATGGAAGAGAGGATGACACTGTGCAACATGG TTGTAGAAGCTGGAGGGAAAAATGGTATTGTTGCTGCTGATCAGAAAACATACCAATACCTTGAGGTTGTTTGGGGTTAA TCAGTGCCTACTATACTTTAATCAGTTTCATTATTTCTGTGTTTTCTTCTCTCAAATTTCCATGGAATTTATATTGCATA GTTTCGTTGCACAGGATAAGACATCTGCACCATTTGAACCAGTTTATAGTGATGAGAAAGCAAGGCAAGTAATCTGTTTC AGAATAGATAATACATTTCCACCTTTTGCTTTCTCTTATGTGACTCTCTTACAACTGATTGTGGTTTTCCTGTTGATGTG CTAGATTTCTAGCCCAGTATAGATTTGATGTATCAAAGATGGAACCATTGGTGGCAAAGGTTGTTTAACTTAGACTTAAA TCATACTTTTTTATTTCACTTTGCCATGAAAATGTAATGATTCTTGTATTTTAAAAAACTTTGTCTAATTCCTGATGTAA TGTAATATGTTTGAACCACTCTACGCAGCCACATTCCCCTGATAATCGCGCTTTGGCAAGAGAGTGCAGCAATGTGAAAA TTGACAGAGTATATATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTATGGCTGCAGCTAAAGTTTTCTTAGCTAGT GTATGTCTATTATAATTTTCTTTCCCTTTCTTGTTAGCATGGAAATGCATACATTTTTTAGATAGAAAACCATCAAGGCT GGACTCTAGGTGACCTAAACTAGTTACCTCTTACCCATGTCACATAGTTAAATAAGCCCATAGAGACACTTTGATGTTCT CACAAAAATTGGAATTGAGGACTAACTATTTTAATCCCACCTGTTATGAAAGATTCCAGTAAAAATCCATGAAGTATAAA AACAAGCTTTGAATATTATATATGTTACAGTATTGTAAGCCATCTCAAAATGAAGTTAGTACACATAAACATAACATATG AGAGACATTTTGAGCATATGATCTAAGTAGGATTTATTTGAGCTTCTTGTTTAGGGTGCATGTTTCTGGAGAAAAACATG TTAATGTAGTGTGTATCTTTTTTTCAGCATTGTAAACATTAGTAACTTTCTTTCTTCTTTTTTTCCTCTCCTTTTAACAT CATGAAATTGTTCCACTATAGGGAAAAACTGTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGTGAATG AGACTGTTTTTCCAGTTTCATAAGTACTTATCACCAAAATCGTTGTTTTAGAACTCAATTAATGAATCTTTCAGGTTTGG ATGGACTTATACACGCTTGAGGTACCTGGCTCAGGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATAC ACCTGCAAGTCCTAGTTGTGCAGCATGTATGGGTGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTAAAAC TCAAATACTATTCCATTGGAAAAACTATTTCCCACTTTCTGGAATGACTATAGATAAATGTAGCACCAGAATTTTTACAG AACAACTGTGTTTTGTTTTGATTTTGATATAACTAATGAAAGGACTCTTAATGCAGGTTTGCGTCTCAACAACAAATAGA AATTTCCCGGGTCGAATGGGGCACAAGGAAGGTCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCATTAAC TGGTTTCGTGACAGACCCCAGGAAATTCTTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0163200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGGTGCAACATATAAAACTATGGAGTTTGTTGGGACCACTATTGAAAGCTTAAGTATGGAAGAGAGGATGACACT GTGCAACATGGTTGTAGAAGCTGGAGGGAAAAATGGTATTGTTGCTGCTGATCAGAAAACATACCAATACCTTGAGGATA AGACATCTGCACCATTTGAACCAGTTTATAGTGATGAGAAAGCAAGATTTCTAGCCCAGTATAGATTTGATGTATCAAAG ATGGAACCATTGGTGGCAAAGCCACATTCCCCTGATAATCGCGCTTTGGCAAGAGAGTGCAGCAATGTGAAAATTGACAG AGTATATATTGGATCATGCACTGGTGGAAAGACTGAAGATTTTATGGCTGCAGCTAAAGTTTTCTTAGCTAGTGGAAAAA CTGTCAAAGTGCCTACTTTTCTTGTTCCTGCAACACAGAAGGTTTGGATGGACTTATACACGCTTGAGGTACCTGGCTCA GGTGGCAAAACTTGTTCACAGATATTTGAGGAAGCTGGGTGCGATACACCTGCAAGTCCTAGTTGTGCAGCATGTATGGG TGGCCCAAAAGACACATATGGACGCTTGAATGAACCCAAGGTTTGCGTCTCAACAACAAATAGAAATTTCCCGGGTCGAA TGGGGCACAAGGAAGGTCAGGTATATCTTGCTTCCCCATATACTGCAGCAGCATCTGCATTAACTGGTTTCGTGACAGAC CCCAGGAAATTCTTCTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0163200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGATYKTMEFVGTTIESLSMEERMTLCNMVVEAGGKNGIVAADQKTYQYLEDKTSAPFEPVYSDEKARFLAQYRFDVSK MEPLVAKPHSPDNRALARECSNVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKTVKVPTFLVPATQKVWMDLYTLEVPGS GGKTCSQIFEEAGCDTPASPSCAACMGGPKDTYGRLNEPKVCVSTTNRNFPGRMGHKEGQVYLASPYTAAASALTGFVTD PRKFF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.499.20
1 83 83 2.1E-26 –
PANTHER
PTHR43822:SF6
1 245 245 9.2E-159 –
PANTHER
PTHR43822
1 245 245 9.2E-159 –
SUPERFAMILY
SSF53732
2 244 243 1.12E-70
IPR036008
Pfam
PF00330
3 236 234 7.8E-44
IPR001030
PRINTS
PR00415
3 16 14 2.0E-6
IPR001030
PRINTS
PR00415
17 30 14 2.0E-6
IPR001030
Gene3D
G3DSA:3.30.499.10
86 244 159 1.4E-52
IPR015931
PRINTS
PR00415
174 187 14 2.0E-6
IPR001030

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0163200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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