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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0183900 |
| Transcript ID | LotjaGi5g1v0183900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi5g1v0183900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:46792455..46801000) extracted from Lotus japonicus Gifu genome v1.2.
CATGCTCTTGTTCAGTTCTAGTTTTTAAAAATAAAGGTGGTACAACCGTCAACCGTACAAGGTACATTTATTCTATCATT CTTTTCAATCTATTGATTTTTGCTAAGCAAGTAATATTATGTTCTGTTTATTAGTTTATATCAACATGCATGCAAAATAT ATTAGAACTGATGTCAAACTTGACATCATTTGAGAATTTTTTTTTGATCCACTTTCTTAATATTTCTTCTGCTTGCAATG AAGGGTATCTTACCATTCAGTTCAGCCATGGATAGCTGATCAGTTTGAATTGCCTTAACCTAATAGATAATTTTCCTTCC CACTCACCTACCTTTTCTTTTATCCTTTCAAGCACAGTTCCTTGATCATTCCTACTATTCTATCTACAGATATAGGTTTA TATTCAGGATCGTTGTTATTATTCTTCTCTCACTTAAATTTCCCCTCAATCTACTAGAGGTACTTAGTTTCATGTCTGTA AGTTCTAGTTTTTATTGTTCATGAGCCCTTGGTGAAGTTGCTGAATATAATTGATAGTGCTCCAGTTATTTGTACCCCTT TTTATCTCATTCTTTGGTAGATCTGGTTCTTTTCTTTAGGAACTAATCATTTTGGCTTCCCAGTTCCCTGATTTTTATGG TATAAAGTTTTGCTATTCTTGTAACCATGACTCCTCTGTTTCTCATTGGAGTGTATTTTTAGTTTGTATCATGTTTGTGG GAGTGGATGCAGAAGATGGTCAAACCGAGATATCTTTGTTTAGAATTAGAGGCAGCAGGCCTGCTTTTCTTGAATATGAA GGAATCCATGAATTAGCTACGGTAAATTATTAATGGCACCTTATTTCAATTTAGAACTGTTCTAATAGGAGACTTTTTTT TTTCCTTTTCTTTATTTGGATTTGAATCTTTCTGCAAAATTTTCGTTCCTGATAATGCTTGTGCCGTATCAGGAACAAAC TCAAATTCTTTTATAGAATAATTGATGACTGTTATTTATTTATTGGGTAACGTAATTGAGGTCTGCTTTGCTAAGCACTC CATAGATAGATTAATTTATTTGGATATTTCAGGAGCACAAAATGGGGAGTTCTACCATTACTACACGAATTTTAACCAAT AAAAGATATAGTATTGGAATGATAATGTTAAAGTGAATATTTGTTGACGGTAGCATTTCTCTTGTTGGAAATCCTGAGCC AGTGTGTTGGAAAAGTATTGACAACTACAAATCACATTTTGCCATGTTTATTCTTACATTTGTGTTTTTACTTAGAACAT TTTAGGATATTAATTACATTTTTTATCCACATTGTTTTCAAATTTGTGATTTTGGTTCCAATAGTTTCAATTGCTCTAAT TAAATTTCTCTACTTTTAAAATTGAATCATTTTAACCCGCAACTTACGTAAAAAATGTGATTCCGATAATTTTTTTGTTA ATTATTTGATAAAAAGTTAATCTCTAGATCAAAATACTAGAGACCGAAATCATGCATATGTAAAATTATAGAGATAAAAA ATGTAGTCAAACTAAATTTATGATTTATTTGCACCTATCTAATTTTTTTTCAGTCTCTTTCTATCTCCTTTTCCATTTCT TATCTATATATCTCTAATTTCTCTTATAACTTTTCTTATATTTCTTTTAGTGTTAGGTGATTGAGATGTGTATGAAAACT TATTGATTTATTTTTATCTCTTATCAAGTATTTTAAAATAGATTTCTCATTCGGTCCACATCCACATTCCACAGTCTTAA GGGTGGGAGGGGTAGCTCACTTGGTTGAGCTAAAGGTAGAAATAAGTGTTGGAGATGGAGGTCCAGAGTTCGAACCCTGA CAACTAACCACTAACATTTGCCTATAAAAAAACATTCCACAGTCTTAAGAGTTTTGAATCTTTATTCATACTCTTATTTT CTTTCATCTCATTTTCACTCACCTGCGTTCAATTTTTTTTATTCACTTTCTTTTTTTTCCTATCGTATCATTTATCATAT CTCATTTTTCGCTCTCTTTCACTCTATATATGAACAGTGAATGTGTTATAGAAGTGTGTACCAACTATTTTCCCTCTTAA AAAATGTATGAAGCATGCAAATGGGTGGTGGACAGATTGTTCTGTGGGTCCACACCCAATTGGGACGCGTGGGTGAGCAT TCACTTTCATTCCGTCAGAACATGAGTCCATCAAAGGAAGAGCATGCAATTGCAAGCAAACAAGGTTGTTTCTGTTTGGT CACACTTTTGACTGTAACTATTTGCCAACCTTAACTTGTCCCTCTATTGCAATATAACATCATTTTCTCTTTTCCTTGTC TTGTTTTTTCCTTTTGACAATTCCACTTTTCATTCTCTTTGGTTGGTTTTATGCTCACCCCAGATTCCCATTTCCCTCAG CATCTACCATTTGTTCCCTTTTCCTCTCTGTTTATGGGAAGTGGATTCTAAACACCCTTCCTTTATTTTTCTGCTTTTTT TAGTTCAAATCTGATGATGGTGGATGTTCATCTTTAGCTGTCAAGAATCTTAAGTATTTGCTTGTGTTGGAGAGAAAGAT GAAGGATTTCCCAGGGACACCTGGCACTGGCCTTGGTTTGGCTCTAAGGATGGCACAGTTCATTTTTGCTGCTGGGTCAA TTGCTTCCATGACTACCACACCCAGTTTCTTTAACTTCACAGCCTTTTGGTAATTGAAGATTTTGCTCTTCTGAAACTTT GTTTTCATGCATTTATCTCTTTTGCTGTTGATTTTGTTAATGGACTGTTTTATCCTCTTAATATGTTAGTTATATTTATT GAACTGTTTGCATATAAGTCAATTTGGCATTTTCAAGTTAGATAGCACTTTGTCAATGTTTATGACAGCGGGGGTGACAT GTGTTCTGGGAATTTTGTATTTTTGTTGGGATCTGGGAAGATATCCATGAAGCAAATTACTGGAAACAGTATATGTGAAC TATAATTTTACTTGACTGAATCAAATGTATCTTGTATAAATATTTCATCAATGAATTGTCTACCCTATTTACAGAGGTTT CTATAAGAATAATTAGGCACATAACTATCCGATTTGTAGGATTAGAAAAATCAGCTTCTGAACCTAGATGCCTAACAGAA GGGTAGGGTGTAAGAGCAAAGGATATTCATAGTTGTGAGGATGATGGGAATGGGAATATTATCTTCTCCCTGAGTTAGGT CTTATTTGCAGTGGATTTTCATGAGGCTTGTGCTTAAAGTTCTTCAAAATATTGCGGTAAAACATTATTTGCTGGGTTAC ATCTTAAATTGTAATAAGTTGTAAGTAAGAAGTGCAAATGATGTGTCTGTTCCTTCTTAATCTTTACTTCAGTTGTTCAC ACAGCAGTGACAATTAACTGCAATGCTTACCATTCACTTGCACACATGTTTATATAAAAAATATCTTCATTGTTTGACTA TTGCTATGAAAATGCTATTACTATACCCAACAAGGTGGTTTTCAAATTGTTAAACCATGACATACTAAGAGTATGCTTGG AAACCAATCCAGTTTCCATTTTACCACATTCCGAGACTTTAAAAATGGAAAATCAGTAGTCTCAAGAAACAAATGTGAAT GCAGGTAATGAGATGGATTGGACTAAAGTACTTTTATGTTTTTGTAAATATATATACAAACACATTAAACCTTTCAGTTT CAAATACATTTTCCTATTGATTGAGTCTTGACACACAATTTGCACTTGAAGACTTTGACCTGCCTACTGTGGAAAACATG AATCTACACCTAACAATTACGACTCTGAGGTGATTGATTTTGTTGTAACAGATTACTCATTGTGTGCATTGTATCCTAGA CCAGCCAGATTCATTAGAGGATATGTTCACCTGATATTTCTCTCTATTGCTCTCTTTATCCCACCCCTAAAATACTATGC ATATTATTGGAATTCACGTACTATTGGAATAGTTGTTGTCAGCATTAGTTTCAAGTAGCATACAAATCATTGGTACTAGG AAATGTTTCTCTTCCTATTTATTATGCTTGTGACGACGCATGCTGCAATCAATTCTTTGATATATAATAAACTCAAGCAA TTCACATGTTACATTCCTACTCTATTAACAAGATAGTATCAGACCTTGTGTGGTCTTCTGCATTTTTTATGTTAAAAAAT GTCAGTACTGTCGTTCGGCTTTACCTTTGTCACTGATGTATCTTTCCTTAGGACCCTTCGTCGTCGAAGTAAGATTTGGG TCATCTTAGATGCTCCCATCTGGCCGTGTATCGTGTACAGTAGCATCATTGCTGTTGGCCTGGTATCAGATTGTGCCACC ACCGATTGCATCCTATTTTTTGGTGCCTCTTAGTCCTATTTGAGTAGTCACATGCCCCTTCCCTCATTGTTCGGATAATG GTTCATTGGTTCTTTGGTTCCTGCCAATGTCCAAATTTGCGTTTGACTTTGTCTAGGACTCTAGGTTGTGCGTATTTAGC TGTTTCTTGTCACTGCAACTTTACTTATAAAAACTTACATTTATAAAATCATTACTGTGGATCCTGAACAAACAAACATT GACTATTCTCAAAAGGGTCTTATTTCTTTGAATATTCAGGCTTTGTGAGAGGGGATCATAACATTTTATTAAATACTGAA TGTAAGGCATATCGTTAAAGCATATCATTCAGGATCTTCCACAGCCTCTGTAGTCCGAAATGGTACTTGTATGGCATGCC TCTCACGTTCCATGTTTGCTGGATCTTTGGTTTTGGTTCCTCTGATCACATTGTTGAGGATCACTCTCAGTTCTCAAAAT TATCATCTGCTGAAACCCCTCATGTCATCACTATTGCTGTTAGTTTAAAAGCTTAATCAACTATTGTTGTTCAAGCTCAC CTTTCCCATTTCTTACTTTGAATTATGTCCTTTTTATTCCTGACCCTTTTAGCTTAATTTCCATTAGCCAACTTATGTGT ACTTTGTTCCATAACCTTCTGTGCTGAATCTTTCATATCAAGACAAATTATTGATGTAGGGTTTTCCTTAACATACATCG ATAAGAGGAAAGAAGTAAGAACCAGATTGGGTCCAATAGAAAAGGTCTGCTGGTTTAAGAGAAGAAAAGAAGAATAAAAA AGAGGAGGGAGCTGGAAAATTCTGATAGGGGAGAGAGATAAAATCACAGTTGGGAATTAGTGGAAGAGGAGGGAGAGTAA CATTGCAAAGAGAAAGACGATTCTTTAGGATTTGGTTTATTACTTTATTTATAGGAAAATGATAGATGGCTCGAAAACTT CTCCCACGAAACCAACAGATGTACATTTAATAATTGGTTTAATATGTGTAATTATTATTTGATCCACTGACTTTGCTTTA CACTGGTTCCTGATTGGTTAGAAAAGCTCTCGTGGTTGATTCGTAGATTATATTTCGAGCCACCTAGCATTGCTCTTATT TATATCCTTATTTATATTGATTTTTTTTCCTTTTTTTAATTTTTCACTATTCGACGAGAATTAGATGTGTACCATTATTA GAAATTAGGATAAGTGCTTTTGTAAGATCACACCAATATATTATATCAATACAATTTTATCCTACAAATTCTTTTTTTCT TTCTCTTTTAGTAGCTTAAGATTAAAACTTATAATTTTATCATAGCATCAGAGCGTTATAATAATGTTATTCCTGTTGAT CTTTGTCATCCAATTTTAGGTACTCTGCTTTTTGTTTGTATGGGTAATCTATTTTTTGTTTGTATACCTGATTTTGGGGT TCTAGCTGCTACTAGTGCTGATCCACCGGCCACCACCATATGTAATTGCAGTTTTATTGTTCCTATACCTGTTTTTGGAG TTCCAGCTTCTATCAGCGTTGACCAACCATAGTTGTTGCTGCAAGTTTCGATTCATTTTTCGTTATCTGGTTTTATGGTT TCAGCCACTTTCAGTGTTGACTCTTGTAGTCACCAAGAGTCGAAGGTGACTTCATAAATTGACTCAGAAGCCACTGCTCG GCCGATCCTTGGTGCTTCATCATCGCCTCCATCCTCTATTGTTAGGGCTTCAACTGCTACAAATGTGGGCCTGCTTTTTG CAAGCATCAGGTGACACCCTTGTACATCTCAGAAGTCATCGACGGACCAATACCCAACGATCATCGTCAGATTCCCTTTC ATGTGCTGACAAGCTTTCGTGGGTGCTCTCACGCGCTGCTGTGCAAGCTTGCGCACAAAGAGCACTTGCCGCCTTACTGA CCTGTTGTCATTGCTGCTTCTTCTATTTTGGCCATTGACTCCTCTCGGTTTTTGTTTGTTGTTTGCTGCTGGTTTTTTTT GGTACATCGGAAAGATAATGTGCGCCCGCCAGGATTCGATCCCTGGACCTCCCCTACCCAACCCATATGTCCCTCAGCTC CTACCACTTGAGCTATGTTTGCTGCTGGTTTGCTATTACTTTAGCCTTGTTTAGTTTTGTAGCGTATTGTTGCTCACTAT GTGTAGGGAATTTAGGTTATTCTTTAGGATTCGGTTTCTTTATTTCCTTATTTATATCGATTTGTTTCCTTATTTAATTG TTCTATGGTTGACTATAATTATGAGTTTACCATTACTATAAATAAGGGTAAGTCTTTGTCTTGTGCAAGATCTCACTAAT ATATTATGTAAATACAATTTTAGTCTCTATTTTCCTTTTTCCTCCTTCAGTACCTTAGAAACTACCTAAATCCTGTAACT TTATCTGTCTTGATTATAGTGGTTCCTTCTCCCTGGTAGCAAAAATGGCATCTGCGCATCATGTTGAGATTATAACTTAT AAGTTAAGCTATTCTTGTTAATTAGTTCATGCTGGATGCTAAAACTTGAGGAATTGAAACTGAAAATAGCTATATGAGCT TTCAAATCCATGAAAATGGTGACTAACTGAACTGACTCTGGAATTCTGAATGATCTGTTTTACTATCGCTTACATGATGG TCTGGAAATTTACTCGCAGTGCTCATCAATAGCTTGATTAAACTGTTCCATTTGCATTTCAGTTACTTGATAGCTTCAAT GGGTTTACAAGTCATTTGGAGCTTTATGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAACC CTCTACTTGTTAGTCTCTTTGTGGTTGGAGATTGGGTTAGCTTCTACCAAAACCTTTAACTAGTTGGTTTGTCACATAAG GAGCCCGTTTGGGTGCGGACCAAAAAGCACTTATTGGAGCTTCTCTACTTAAAAACACAAGTTCCAATAAGTATTCTTCG GTCCGCATCCAAACGGTTATGGTTTTTTATTTACATGTCTTCTTGACCACTATTGACAGGTAACAGCAATACTATCTCTA GCTGCAGCATCTTCCTCAGGTGGCATCACAGTTTTGTACTTTCATGATCTTGGACATTGCCGTTTTGGAGAGGGATGCCG GAAGTATCAGATTTCAGTTGCACTAGCCTTCTTGAGCTGGATACCAATTTCAATTTCATCTCTAATTATGCTTTGGATAT TAGCTGCAGGGTAGAATCATCCGAAAGGTTGTTCATGTGATTGAAAATCTGCAATTGAAAGTGTCAATAGTAAAGGAAAT AGAGTAGATGTTTACACTCGTTCAAATTGATTCCTTCATTTCAACCAGAACTGGGTCAGATTGTAAAGAGAGAGAGAAAA AAATGCGATTTTGCCTTGCAAAGAAATTAATCTATCAAAACTGTTATGGTGATTTCTTGATCCTGTGACCAGAAGGTCAA CTTTTATGTTTATAGGAAATTGGGTTGTGAATACTGTAATACTTGTTTTTGTTAGATAGTTTTCTCCTATGTTACCTCGC AAGTATCTGTTATATGCTTGGAAAAGGCATTTACTTGTTCCCATTATAAATTCTTCCCATTGATCATTTTCTTACAGCTA TGAATGGAGTGCCATTAAACTTGATCCTGGACTGTATTCTGGTTACTGAAGCAAACATTATAGCCATAGAAGCAGCCTGC AAAAGATAAACAGTGATGTCATTACGCGAATCTGTTGTTGCTTAAAGAGTTCGAAACTCAGGTCCAAATCACTAGTCAAA AGTTGTTGCATTTAGTAAGATGTAAAACAACTGTCCAATCTTGATGTGAATTCAGAAAAGCAAACTTCGAAGTTAGTGAT TGGTTTGCTGTTGGAACCTGGTACTCGAAATATGGCTAAAATAACTTTGGTAGAACAATTCTCACTCCTGTGTAGAGCTA GACAGGAATGGATCATCTCATGTCAAATTCTTCCTATGTTTCTCATTTTCAAAATTTTGTGTCTACCTGTGTCTTTATAT GTATGTATAAGTGAAACCCTTATGAAGAGAGAGATGTACACAATTTTCAACATGAGATAAATGAGAAAGTTTCGACATGA GAGGATCCATTCCCAGAGTTAGACACAATTATTGGAATATGCGGGTTAAAGTGAGTGTCGCAAACATTTCTTTTTGTCAT TTTTCAACCACTTCATTTTATTTTACTTGGAATAAGAGGTTTGATCCTGTTGCTAAGGTGTTGTTG
CDS sequence (LotjaGi5g1v0183900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGATTTCCCAGGGACACCTGGCACTGGCCTTGGTTTGGCTCTAAGGATGGCACAGTTCATTTTTGCTGCTGGGTC AATTGCTTCCATGACTACCACACCCAGTTTCTTTAACTTCACAGCCTTTTGTTACTTGATAGCTTCAATGGGTTTACAAG TCATTTGGAGCTTTATGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAACCCTCTACTTGTT AGTCTCTTTGTGGTTGGAGATTGGGTAACAGCAATACTATCTCTAGCTGCAGCATCTTCCTCAGGTGGCATCACAGTTTT GTACTTTCATGATCTTGGACATTGCCGTTTTGGAGAGGGATGCCGGAAGTATCAGATTTCAGTTGCACTAGCCTTCTTGA GCTGGATACCAATTTCAATTTCATCTCTAATTATGCTTTGGATATTAGCTGCAGGGTAG
Protein sequence (LotjaGi5g1v0183900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDFPGTPGTGLGLALRMAQFIFAAGSIASMTTTPSFFNFTAFCYLIASMGLQVIWSFMLALLDAYALVKKKVLHNPLLV SLFVVGDWVTAILSLAAASSSGGITVLYFHDLGHCRFGEGCRKYQISVALAFLSWIPISISSLIMLWILAAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 152 | 152 | 7.2E-85 | – | |
| PANTHER | 1 | 152 | 152 | 7.2E-85 | – | |
| Pfam | 8 | 136 | 129 | 3.0E-25 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 68 | 26 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 88 | 109 | 22 | - | – | |
| Phobius | 110 | 129 | 20 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 130 | 150 | 21 | - | – | |
| Phobius | 151 | 152 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0183900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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