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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0183900 |
| Transcript ID | LotjaGi5g1v0183900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT3G23200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|Q8L7R5|CSPLG_ARATH CASP-like protein 5B3; TrEMBL-Plants: tr|I3S4F7|I3S4F7_LOTJA CASP-like protein; Found in the gene: LotjaGi5g1v0183900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:46795013..46799988) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGATTTCCCAGGGACACCTGGCACTGGCCTTGGTTTGGCTCTAAGGATGGCACAGTTCATTTTTGCTGCTGGGTC AATTGCTTCCATGACTACCACACCCAGTTTCTTTAACTTCACAGCCTTTTGGTAATTGAAGATTTTGCTCTTCTGAAACT TTGTTTTCATGCATTTATCTCTTTTGCTGTTGATTTTGTTAATGGACTGTTTTATCCTCTTAATATGTTAGTTATATTTA TTGAACTGTTTGCATATAAGTCAATTTGGCATTTTCAAGTTAGATAGCACTTTGTCAATGTTTATGACAGCGGGGGTGAC ATGTGTTCTGGGAATTTTGTATTTTTGTTGGGATCTGGGAAGATATCCATGAAGCAAATTACTGGAAACAGTATATGTGA ACTATAATTTTACTTGACTGAATCAAATGTATCTTGTATAAATATTTCATCAATGAATTGTCTACCCTATTTACAGAGGT TTCTATAAGAATAATTAGGCACATAACTATCCGATTTGTAGGATTAGAAAAATCAGCTTCTGAACCTAGATGCCTAACAG AAGGGTAGGGTGTAAGAGCAAAGGATATTCATAGTTGTGAGGATGATGGGAATGGGAATATTATCTTCTCCCTGAGTTAG GTCTTATTTGCAGTGGATTTTCATGAGGCTTGTGCTTAAAGTTCTTCAAAATATTGCGGTAAAACATTATTTGCTGGGTT ACATCTTAAATTGTAATAAGTTGTAAGTAAGAAGTGCAAATGATGTGTCTGTTCCTTCTTAATCTTTACTTCAGTTGTTC ACACAGCAGTGACAATTAACTGCAATGCTTACCATTCACTTGCACACATGTTTATATAAAAAATATCTTCATTGTTTGAC TATTGCTATGAAAATGCTATTACTATACCCAACAAGGTGGTTTTCAAATTGTTAAACCATGACATACTAAGAGTATGCTT GGAAACCAATCCAGTTTCCATTTTACCACATTCCGAGACTTTAAAAATGGAAAATCAGTAGTCTCAAGAAACAAATGTGA ATGCAGGTAATGAGATGGATTGGACTAAAGTACTTTTATGTTTTTGTAAATATATATACAAACACATTAAACCTTTCAGT TTCAAATACATTTTCCTATTGATTGAGTCTTGACACACAATTTGCACTTGAAGACTTTGACCTGCCTACTGTGGAAAACA TGAATCTACACCTAACAATTACGACTCTGAGGTGATTGATTTTGTTGTAACAGATTACTCATTGTGTGCATTGTATCCTA GACCAGCCAGATTCATTAGAGGATATGTTCACCTGATATTTCTCTCTATTGCTCTCTTTATCCCACCCCTAAAATACTAT GCATATTATTGGAATTCACGTACTATTGGAATAGTTGTTGTCAGCATTAGTTTCAAGTAGCATACAAATCATTGGTACTA GGAAATGTTTCTCTTCCTATTTATTATGCTTGTGACGACGCATGCTGCAATCAATTCTTTGATATATAATAAACTCAAGC AATTCACATGTTACATTCCTACTCTATTAACAAGATAGTATCAGACCTTGTGTGGTCTTCTGCATTTTTTATGTTAAAAA ATGTCAGTACTGTCGTTCGGCTTTACCTTTGTCACTGATGTATCTTTCCTTAGGACCCTTCGTCGTCGAAGTAAGATTTG GGTCATCTTAGATGCTCCCATCTGGCCGTGTATCGTGTACAGTAGCATCATTGCTGTTGGCCTGGTATCAGATTGTGCCA CCACCGATTGCATCCTATTTTTTGGTGCCTCTTAGTCCTATTTGAGTAGTCACATGCCCCTTCCCTCATTGTTCGGATAA TGGTTCATTGGTTCTTTGGTTCCTGCCAATGTCCAAATTTGCGTTTGACTTTGTCTAGGACTCTAGGTTGTGCGTATTTA GCTGTTTCTTGTCACTGCAACTTTACTTATAAAAACTTACATTTATAAAATCATTACTGTGGATCCTGAACAAACAAACA TTGACTATTCTCAAAAGGGTCTTATTTCTTTGAATATTCAGGCTTTGTGAGAGGGGATCATAACATTTTATTAAATACTG AATGTAAGGCATATCGTTAAAGCATATCATTCAGGATCTTCCACAGCCTCTGTAGTCCGAAATGGTACTTGTATGGCATG CCTCTCACGTTCCATGTTTGCTGGATCTTTGGTTTTGGTTCCTCTGATCACATTGTTGAGGATCACTCTCAGTTCTCAAA ATTATCATCTGCTGAAACCCCTCATGTCATCACTATTGCTGTTAGTTTAAAAGCTTAATCAACTATTGTTGTTCAAGCTC ACCTTTCCCATTTCTTACTTTGAATTATGTCCTTTTTATTCCTGACCCTTTTAGCTTAATTTCCATTAGCCAACTTATGT GTACTTTGTTCCATAACCTTCTGTGCTGAATCTTTCATATCAAGACAAATTATTGATGTAGGGTTTTCCTTAACATACAT CGATAAGAGGAAAGAAGTAAGAACCAGATTGGGTCCAATAGAAAAGGTCTGCTGGTTTAAGAGAAGAAAAGAAGAATAAA AAAGAGGAGGGAGCTGGAAAATTCTGATAGGGGAGAGAGATAAAATCACAGTTGGGAATTAGTGGAAGAGGAGGGAGAGT AACATTGCAAAGAGAAAGACGATTCTTTAGGATTTGGTTTATTACTTTATTTATAGGAAAATGATAGATGGCTCGAAAAC TTCTCCCACGAAACCAACAGATGTACATTTAATAATTGGTTTAATATGTGTAATTATTATTTGATCCACTGACTTTGCTT TACACTGGTTCCTGATTGGTTAGAAAAGCTCTCGTGGTTGATTCGTAGATTATATTTCGAGCCACCTAGCATTGCTCTTA TTTATATCCTTATTTATATTGATTTTTTTTCCTTTTTTTAATTTTTCACTATTCGACGAGAATTAGATGTGTACCATTAT TAGAAATTAGGATAAGTGCTTTTGTAAGATCACACCAATATATTATATCAATACAATTTTATCCTACAAATTCTTTTTTT CTTTCTCTTTTAGTAGCTTAAGATTAAAACTTATAATTTTATCATAGCATCAGAGCGTTATAATAATGTTATTCCTGTTG ATCTTTGTCATCCAATTTTAGGTACTCTGCTTTTTGTTTGTATGGGTAATCTATTTTTTGTTTGTATACCTGATTTTGGG GTTCTAGCTGCTACTAGTGCTGATCCACCGGCCACCACCATATGTAATTGCAGTTTTATTGTTCCTATACCTGTTTTTGG AGTTCCAGCTTCTATCAGCGTTGACCAACCATAGTTGTTGCTGCAAGTTTCGATTCATTTTTCGTTATCTGGTTTTATGG TTTCAGCCACTTTCAGTGTTGACTCTTGTAGTCACCAAGAGTCGAAGGTGACTTCATAAATTGACTCAGAAGCCACTGCT CGGCCGATCCTTGGTGCTTCATCATCGCCTCCATCCTCTATTGTTAGGGCTTCAACTGCTACAAATGTGGGCCTGCTTTT TGCAAGCATCAGGTGACACCCTTGTACATCTCAGAAGTCATCGACGGACCAATACCCAACGATCATCGTCAGATTCCCTT TCATGTGCTGACAAGCTTTCGTGGGTGCTCTCACGCGCTGCTGTGCAAGCTTGCGCACAAAGAGCACTTGCCGCCTTACT GACCTGTTGTCATTGCTGCTTCTTCTATTTTGGCCATTGACTCCTCTCGGTTTTTGTTTGTTGTTTGCTGCTGGTTTTTT TTGGTACATCGGAAAGATAATGTGCGCCCGCCAGGATTCGATCCCTGGACCTCCCCTACCCAACCCATATGTCCCTCAGC TCCTACCACTTGAGCTATGTTTGCTGCTGGTTTGCTATTACTTTAGCCTTGTTTAGTTTTGTAGCGTATTGTTGCTCACT ATGTGTAGGGAATTTAGGTTATTCTTTAGGATTCGGTTTCTTTATTTCCTTATTTATATCGATTTGTTTCCTTATTTAAT TGTTCTATGGTTGACTATAATTATGAGTTTACCATTACTATAAATAAGGGTAAGTCTTTGTCTTGTGCAAGATCTCACTA ATATATTATGTAAATACAATTTTAGTCTCTATTTTCCTTTTTCCTCCTTCAGTACCTTAGAAACTACCTAAATCCTGTAA CTTTATCTGTCTTGATTATAGTGGTTCCTTCTCCCTGGTAGCAAAAATGGCATCTGCGCATCATGTTGAGATTATAACTT ATAAGTTAAGCTATTCTTGTTAATTAGTTCATGCTGGATGCTAAAACTTGAGGAATTGAAACTGAAAATAGCTATATGAG CTTTCAAATCCATGAAAATGGTGACTAACTGAACTGACTCTGGAATTCTGAATGATCTGTTTTACTATCGCTTACATGAT GGTCTGGAAATTTACTCGCAGTGCTCATCAATAGCTTGATTAAACTGTTCCATTTGCATTTCAGTTACTTGATAGCTTCA ATGGGTTTACAAGTCATTTGGAGCTTTATGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAA CCCTCTACTTGTTAGTCTCTTTGTGGTTGGAGATTGGGTTAGCTTCTACCAAAACCTTTAACTAGTTGGTTTGTCACATA AGGAGCCCGTTTGGGTGCGGACCAAAAAGCACTTATTGGAGCTTCTCTACTTAAAAACACAAGTTCCAATAAGTATTCTT CGGTCCGCATCCAAACGGTTATGGTTTTTTATTTACATGTCTTCTTGACCACTATTGACAGGTAACAGCAATACTATCTC TAGCTGCAGCATCTTCCTCAGGTGGCATCACAGTTTTGTACTTTCATGATCTTGGACATTGCCGTTTTGGAGAGGGATGC CGGAAGTATCAGATTTCAGTTGCACTAGCCTTCTTGAGCTGGATACCAATTTCAATTTCATCTCTAATTATGCTTTGGAT ATTAGCTGCAGGGTAG
CDS sequence (LotjaGi5g1v0183900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGATTTCCCAGGGACACCTGGCACTGGCCTTGGTTTGGCTCTAAGGATGGCACAGTTCATTTTTGCTGCTGGGTC AATTGCTTCCATGACTACCACACCCAGTTTCTTTAACTTCACAGCCTTTTGTTACTTGATAGCTTCAATGGGTTTACAAG TCATTTGGAGCTTTATGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAACCCTGTAACAGCA ATACTATCTCTAGCTGCAGCATCTTCCTCAGGTGGCATCACAGTTTTGTACTTTCATGATCTTGGACATTGCCGTTTTGG AGAGGGATGCCGGAAGTATCAGATTTCAGTTGCACTAGCCTTCTTGAGCTGGATACCAATTTCAATTTCATCTCTAATTA TGCTTTGGATATTAGCTGCAGGGTAG
Protein sequence (LotjaGi5g1v0183900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDFPGTPGTGLGLALRMAQFIFAAGSIASMTTTPSFFNFTAFCYLIASMGLQVIWSFMLALLDAYALVKKKVLHNPVTA ILSLAAASSSGGITVLYFHDLGHCRFGEGCRKYQISVALAFLSWIPISISSLIMLWILAAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 141 | 141 | 9.4E-71 | – | |
| PANTHER | 1 | 141 | 141 | 9.4E-71 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Pfam | 8 | 125 | 118 | 6.4E-16 | ||
| TMHMM | 10 | 29 | 20 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 43 | 68 | 26 | - | – | |
| Phobius | 69 | 79 | 11 | - | – | |
| TMHMM | 78 | 97 | 20 | - | – | |
| Phobius | 80 | 98 | 19 | - | – | |
| Phobius | 99 | 118 | 20 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 119 | 139 | 21 | - | – | |
| Phobius | 140 | 141 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0183900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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