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LotjaGi5g1v0194900.2

Overview

Field Value
Gene ID LotjaGi5g1v0194900
Transcript ID LotjaGi5g1v0194900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Lon protease homolog; TAIR: AT1G33290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P51281|YCF45_PORPU Uncharacterized protein ycf45; TrEMBL-Plants: tr|A0A072VN28|A0A072VN28_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi5g1v0194900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:49001922..49006856) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGGGGAAAAGTGGATAAGGGAGAAAGGAAACAGAAATGGGCGTTGCGACACTATCATCATCTTCTTCATGTTGGATG GTGGCGCCATGGATTTCAAAGACAAAACCACACACCACTCTCAAATTCAACTGCTCGCAAGCCTCGCCGCCACTTCCACA CTCTTCTTCTTCTTCTGCGCAGAAAGACGACCTCCAACCTCTCTTACAGGCACCTTCTTCTTCCCTCTTCCTCCATTCCC AATTCGTATTCACTGCTTTCTCACTCACACCCATGTATCTTCTCTTTTGCAGATTCTTCCCTCTGATTTGCATCACAATC TCCTCAATCAAGCAAATCGCCCTCAACTTCTAGAGGTCAATTTCCAATCATCTCTTCCAATTATGAAGTTAAACACCAAT CTTATATTATACCCAATTTCGTTATTTTAGGTTATTTTGGATTTGGGTCGTTACCCAGAAGCTCGTTACCTAGGAAAACT TGGTAGCCAGTATCTAAGGAACACTGAGGTAATCATAATTTCTTAAAAATTAGACCTTTTTATTACTACTTTCATTTTCA AATTTTTCAAGGAAGATGGAAGTTAGTAATTAAAAAGATTAAATTTTTGGTCTACTTTAACCAAGAGGGGTAGCTCAGTT GGCAACGTAGGCTGAGTGTGTGGGAAGAGCTTTGGGGTTCGATCCCCACACAATACACACTGGGGGGATGATGAGCCTTA ACTGTGACTAAATCCCGAATCTGACAGCATCCAAAGGGTGTCCGGTACCGGATATTTATACCAAAAATAAAATGGTCTAC TTTTTTGATTCATAATGGTAATTAAATTTGCAAAATTTTGGAAAAGATTTGTATTGGAGGGAATTTTTTGTGTGGTTTGA TGTGTTGAGGAATGTGTGTGTAGCTAGGTAACGGTGAAAGAGTTGGAACATGCTCAACAAGCTGTTGGTGAGTTTGGGAG GGACAATAGAGCTGGCATTGAGGGTACGTTGCATCGGATATCCGCGATAAGGAGTAGGAATGGTGCCATTGTTGGGTTGA CGTGTCGGGTTGGGAGGGCGGTCAGCGGCCACATTGACATGGTTTATGATCTGCTTCAATATGGGAAGAACATTTTATTT GTTGGAAGGTATAGCAGCAGCACCCTATTCATAGCTTGTTCCATTGTTGTATTTATCATTTTATCTTTTGGTCTAAATAC TAGGACATCTTTTTTAAAAAACAAAGTTATAGACTTGGTGGGTTCCTTTACTGGCACTGTTAATTGGAATATATATATAA ATCTAATTCACTCCTTTGGAGGTTTTGAAATCTATGTTATGGAAATTGACAAAATGTAATAAATGGTACTAATCATGGTT TTCTTGATTTCCTAATCCAATCCAACAGCATTATAGAATGTCCAACTCATTCACCACACATGCTTTATTTACCATTATCT GATGATGTTTCTTTTTGCTTGGATATCCTAAAATTTGGATTCTCTTAGGCCTGGGGTTGGCAAGACTACCGTTATGCGAG AGATTGCTCGTGTACTGTCTGATGAATTTAACAAGAGAGTGGTACACTTATTTCTCAGTGTCTCACTGTGCTCTTTCTTT CTCAGACTACTTTGTTGATCAGCTTATGAATAGAATAAACTCTTGCAAATTGGGTAGGTGATTGTTGATACCAGCAATGA AATTGGAGGCGATGGCAATATTCCTCATGCAGCAATTGGGGGTGCACGAAGAATGCAGGTACCTGAGCCATCAATGCAGC ATAGCGTGATGATTGAGGCAGTAGAAAATCACATGCCTGAGGTGATTATAGTCGATGAGATTGGCACAGTAGCTGAAGCT CATGCTTGCAGGTCAATTGCTGAGCGAGGCATTATGCTTATTGGGACTGCTCATGGAGAGCAGCTTGAGAATATCATGAA GAATCCTACACTCTCTGATCTGGTTAGTTCTTATTTTCATTTGGTTGTGCCAACAATAACATTTAAGACATTTTAGTTTT TCTCCCTTTAAGACGTTGAGCTCTCTAGCTTGGTTGAGTGGTTTATCTGACAAAGTGACTATCAATTTCTTCAATGTAAA CTTGAGCTGCATTTTATTTCATTCGTTCATTTGAAATACATGTTGAGCAGATTAGTGTGTGATGTTAAAGAGATGCTTGA TTTGTGGAAATGAGTCATTATGCAATCTAATCAAGTTTAATATTCAAGATCCTCCTCCATTTGCTTTATCAGATTGGCGG AATAGCAAGCGTTACTCTGGGAGACGCAGAAGCCAGAGCAAGAAAGTGTCAGAAGACAATTCTTGAGAGGAAAGCACCTC CAACATTTGATTTCGTGATGGAGATGAGAGACAGACACTACTGGATTACACATCAGGTATGTTAATTGAGCATTTATTAC TCCAGTCAAGAAAGATTCATATCTTGTGGATTGCATTGGTAAAAACCTTTTTACCAAGTAAAAACCTTCTTTCAAACTTA TCAGGTAAAAACCCTTGAAAACCCCTTCCAAGTAAAAACCTTTTTACAAACTCAATAATCAAATCCTAATCCTTATGTAT TATTGTATTAGGAAGACACTCTTATTTATAATAAATAAACTAACACTACTAAGAAAATGACACTGGCCCAACATAGGCCC GACTCCACTAATAAAACAAACTAAAAGATAGAAAAGTTAAACTAAAGATAGACTGAGCCATACAGATCCATGAATCCACT AACAGTAACAAATAACACTAGCCCAGGGTCACCCAGGATCCCTAGGCCCATTCTCTTGGATCCCAACACATCCTATATAT CCCAAGTTGGAGGGCAGACAAATGGGATTTCGGGTAGAACATAAATTCATTCCATCATAATATCATATTTCATCGCATTG CATCCTACTTTTAATTATCCAAACATTGGAACTTTGTATCATTCCTTTCTATCAATCCAAACATAACAATTGCAATAACA ACCAAGCCTTACCCTAGGTGGGTTCAGCTAGATGCATTAGGTGATGCCATAAAGCTCTATCATGTATTATGTAATCCAAA CATAACCTTAGTGAAAAGTTATTTCACACTGTTGCTTTAAATCATTTTTTATAGAAGCTTTTCTCTGTTAATACTTTTTT ACTAACCATTATAACTTCTTTTCAAAATAAACACCAGTCATAGTATCTAGGGGTTGAACGTGAAATTTTTATAACTATAA TTATACTAAAAATCATGAAAGTAAATGCTAGAATGGATTGCCATATACTCATATACAAGGTTTTAAATATCGCTCCGTTA CATGAATACCGGCCGCGAAATAACGGTTTCGGTGGCCACCGATACCGAAACAGGACGATTTCACGGTGGGAAGCAAAATC ACAGGTAACGTCCGCAACAGAACAATATTGCGGCCGCAACGGACGCAACGCAACGCCGTTTTCCCCGCATCAGAGACTGG TACAGCTGCAAACTCCATTTTCATTGCTGGAGAGGTGGTGCAGCTGCAAATCAAACACCATTTTTCTGCTTTCATGGTCT TCACAGCACTCAATCTTCACATTTTCAGACTTCAAATTGCAATAATTGGATCGAATTCGATCATGTTTCTCGCTCCTGTG TTTGTGCTTTTTGTTGGTGGTATTGCAAATCTGGGTGTGGTTTAGTTTGGGTCGGTGAAATAGTGGCTAAGGAGAGAGAA GAAGCAGAAAACTAAGAGATAAGAAAGTGACACCTAAAAGTTAATATGAGCCAAATGGAGGTGTGAAGGATAAGATAAAA AGGGTCTCAATTCATATAAAAAGGGCCTGCATAATTCATTGGTTAAATTTATTGTATTAGTTTCATTTTTTTCCTTTAAA TATCTTATATTAATAAGAAAATTAAGTCATGAGAGTTTTAGTATAAGTTGGGAATAATTGTGAACCATTCACACCGCAAC ATCCGCAACACCCGCAATACCCGCAACCGTGAAAACTGAAACGCGACCGCGACCGATATTTAAAACCTTGCTCATATATG TTAGGCCTATATGTTATTGATGATTCAAATCTACATTGAGCTTTGAATCTCCTGCATCATTATTTAAGATGCGTTACTTT TTTGATTATTTGATTTCATTGCTGCCAAATCACTCGAGTAGAATTGTAAGAGATTTGGATAAGCTAAAATATGAATTGGT TTAAGGTTAACTTGTTTATTTCATGTTTTCTTTTTGCAGACTGACAAAAGCGTTGATCTGTTGCTTCAAGGCAAAATTCC ACAAGTTGAGGTAATTCTTTTGTAGTATACTTCTTATTTAGTTTGTGATTGTAAGTCCTTATTTTGCACATAGAAGATGT GCTTTTCTATTATTTTTATTATTAACAATGATACTTTTTCATTTATTTTAGTTGTAGTTGGATATGCATGGCCTTTTACT ATTAATTTTCCTACTGAAAAGGACTATTAGCTTTCCGGTGGAGGCCAGATAAAAAAGTATTACAGTTTTTGTTCAGTTTC TTCACTTTTCTGAAACTATTTAATAGCGAGCAAAATATATTATTAGCCTTTGAGATTGGATAAACTTGAGTATCATACAA ATAAAGAATTGCACCTGGCTTGATTATTCCTTTACTCTTCGGTTTCTTCTCTAGTTCTCCTCTTGAGGTTACTTCTCGGT CATTGTATCATCTTTCCAGGATGTTTCATATTATGACTGATGTTGTTTTAAACTCTTCTGCAGGTAAGAAAAAGAGATGA AAAATGCAAGGTTGTGATAGAAAAATCTAAAGCGTATGATAAATGCCAAATTTGATAATATAATTCATTTTGAAGCAGTG TAGGATTGTTAAATTGTTTATGAAAAAGTTTAAGATTTTAAAGCTATAAACATGTTAAACATTTTGTAAATTGTGTTTTG TTGACATAACTATGTATAGATTTATATCTTCCACTTTGAAGTTACATCCTTTTCC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0194900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCGTTGCGACACTATCATCATCTTCTTCATGTTGGATGGTGGCGCCATGGATTTCAAAGACAAAACCACACACCAC TCTCAAATTCAACTGCTCGCAAGCCTCGCCGCCACTTCCACACTCTTCTTCTTCTTCTGCGCAGAAAGACGACCTCCAAC CTCTCTTACAGATTCTTCCCTCTGATTTGCATCACAATCTCCTCAATCAAGCAAATCGCCCTCAACTTCTAGAGGTAACG GTGAAAGAGTTGGAACATGCTCAACAAGCTGTTGGTGAGTTTGGGAGGGACAATAGAGCTGGCATTGAGGGTACGTTGCA TCGGATATCCGCGATAAGGAGTAGGAATGGTGCCATTGTTGGGTTGACGTGTCGGGTTGGGAGGGCGGTCAGCGGCCACA TTGACATGGTTTATGATCTGCTTCAATATGGGAAGAACATTTTATTTGTTGGAAGGCCTGGGGTTGGCAAGACTACCGTT ATGCGAGAGATTGCTCGTGTACTGTCTGATGAATTTAACAAGAGAGTGGTGATTGTTGATACCAGCAATGAAATTGGAGG CGATGGCAATATTCCTCATGCAGCAATTGGGGGTGCACGAAGAATGCAGGTACCTGAGCCATCAATGCAGCATAGCGTGA TGATTGAGGCAGTAGAAAATCACATGCCTGAGGTGATTATAGTCGATGAGATTGGCACAGTAGCTGAAGCTCATGCTTGC AGGTCAATTGCTGAGCGAGGCATTATGCTTATTGGGACTGCTCATGGAGAGCAGCTTGAGAATATCATGAAGAATCCTAC ACTCTCTGATCTGATTGGCGGAATAGCAAGCGTTACTCTGGGAGACGCAGAAGCCAGAGCAAGAAAGTGTCAGAAGACAA TTCTTGAGAGGAAAGCACCTCCAACATTTGATTTCGTGATGGAGATGAGAGACAGACACTACTGGATTACACATCAGACT GACAAAAGCGTTGATCTGTTGCTTCAAGGCAAAATTCCACAAGTTGAGGTAAGAAAAAGAGATGAAAAATGCAAGGTTGT GATAGAAAAATCTAAAGCGTATGATAAATGCCAAATTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0194900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGVATLSSSSSCWMVAPWISKTKPHTTLKFNCSQASPPLPHSSSSSAQKDDLQPLLQILPSDLHHNLLNQANRPQLLEVT VKELEHAQQAVGEFGRDNRAGIEGTLHRISAIRSRNGAIVGLTCRVGRAVSGHIDMVYDLLQYGKNILFVGRPGVGKTTV MREIARVLSDEFNKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVPEPSMQHSVMIEAVENHMPEVIIVDEIGTVAEAHAC RSIAERGIMLIGTAHGEQLENIMKNPTLSDLIGGIASVTLGDAEARARKCQKTILERKAPPTFDFVMEMRDRHYWITHQT DKSVDLLLQGKIPQVEVRKRDEKCKVVIEKSKAYDKCQI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20953
32 80 49 1.1E-182 –
PANTHER
PTHR20953:SF13
32 80 49 1.1E-182 –
PANTHER
PTHR20953
78 355 278 1.1E-182 –
PANTHER
PTHR20953:SF13
78 355 278 1.1E-182 –
SUPERFAMILY
SSF52540
121 288 168 4.12E-15
IPR027417
Gene3D
G3DSA:3.40.50.300
125 312 188 8.5E-23 –
CDD
cd00009
138 236 99 1.85846E-10 –
SMART
SM00382
143 299 157 9.1E-14
IPR003593
Pfam
PF13604
144 282 139 2.4E-7 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0194900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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