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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0201300 |
| Transcript ID | LotjaGi5g1v0201300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Starch synthase, chloroplastic/amyloplastic; TAIR: AT1G32900.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q43092|SSG1_PEA Granule-bound starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr|B2CP01|B2CP01_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi5g1v0201300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50058608..50062448) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAACTGTAACGGCCTCATCATACGCGGTGTCAAGAAGCGCGTGCCTCAACCGCCATGGAAGAACAGACTCTGCTGC TGCCAAAGTGAATTCGGTGACTCTCGGTGGCCACGCGCTGGTTTACGATGGGTTGAGATCTCTCAACAAGTTGCACGTGC GATCCGCACGTGCGGTGAAAGGCTTGTCGTCGACGGCGAGTGACGGAGGAGCCGCGCGTGGTAAGGCTTCCGGGGAGGTT GTGTGTGGGATGAACTTGGTGTTCGTCGGAGCTGAGGTCGGACCTTGGAGCAAAACTGGTGGACTCGGTGATGTTCTTGG AGGACTTCCACCTGCTTTGGCAGTAAGTCGATTTCATCAATTTGGATTTTCTCTCTTCTGTCACCTGTTTCTATTATATC ATTATGGAAAATGTTTGGTATAGAAAAACGATAATGTGATGTGAGGTGACATGAGAGATTCATAGCATGTTTCCATCAAC TTAATTTTTCTCAGAATCAATTTTCATATTGGAAACTATTATAAACTTCTCTATAGAATATTCAGAATCAATTGTAGAAG TAGGATGTTTTGAAATAATTCTATAATTGATTCTAAAGCGAAATTCAATTATGTGAAAAAGTTTATGCGAGTATATTCTG GGTGTCAGAATTGAATCCGAGGAAAAATAAGTTAATCCAAAGTGGATGTAACTTTGGGGTGTTTAAAAATCTATTTGGAT TATTATTATCATCTGAGCCAGTTTTCTGCTAATTGATGTAGGGAAATGGGCACCGTGTGATGACAGTGTCGCCGCGGTAT GATCAATACAAGGATGCATGGGACACCAATGTGACGGTGGAGGTAAAAAATTTGTACCTGGGTATCTATAAATCTAGGAT CTATGGCTGGTTAATGTTAATTATGTGTTTTATTTATGTTTTTTGGTAGGTCAAAGTTGGAGATAGAGTAGAAACTGTCC GTTTCTTTCACTGCTACAAGCGAGGAGTTGATCGTGTTTTTGTGGATCACCCAATGTTCCTTGAGAAGGTGTTTTTATTG TCATCATCAACCAATGGAATATTTGTAGGATTTTAGACAGTGTGACACTTTTAAATTAAACTAACTTTTCTTTTGGTTTA TGGAATTCGACAGGTTTGGGGCAAAACTGGGTCGAAACTCTATGGCCCTACGGCTGGAGTGGATTATGAAGATAACCAAC TTAGATTCAGCTTGTTGTGCCAGGTAGCTTATTGCCATGTATTATCTTCCTTTAGTTTTATCCTGTATGATTCTCTATTG ATGGTAAATATTGAATAACATTGCCCCTGAAGCTTTTAAAGTTAAATTTTTTTGTGTACCTCACCTGGTCATTTTCTTCC CTTATGCTGATGATTATTAGTCATTGTCTGGATAATTGGACATAGTCCAATGTCCTCTGAATCACAATTATCAGTCCTCT CTGTTTGACACTGTCAGTTGATTTAATTTCTTGAGCATATGGCAAAGAGTCTTGAGACATGCAGCACATTATTGAATCCC TTCAACCATGATTTGCAGTTTTGTTTTATTTTTGCTGACTGCAATTTCATGCTGGGATTGGATTTTAATCATTGTTACCA GTACTTATTTGTACTATGTAGTTGAGAATTACAACTCCTTTATGTTGACTGTAAATATGACACTATCTATGTCTTAAACA ACTTTCAGGCTGCACTTGAGGCACCTAGGGTTTTGAACTTAAATAGCAGCAAATATTTCTCTGGACCATATGGTATGGGT CTCTGGTTTTTTAATTCCTTGATCTTAAAACTTCAGCTGAGAAAAAGAATTGTTATGCTGACAAGTTTTTCTGTATTTGA GCAGGCGAAGATGTAGTCTTCATTGCTAATGATTGGCACACTGCTCTTCTTCCATGCTACTTGAAATCAATGTACAAGTC CAGGGGGATTTACCAAAATGCAAAGGTGGGGATTTATTCCCTTTTTGGGTGTGTGGAGTCAATTTTGTATTTTAGGCTTC ATCATTCTCGAGAAACTGACTTTCCTTGGTTAATCATGGCAGGTTGCGTTTTGTATTCATAACATAGCCTACCAGGGTAG GAATGCCTTTTCAGACTTCTCTCAACTCAATTTACCTAACCAATTCAAGAGCTCTTTCGACTTTACTGATGGGTATGATA CCATTATCCTTTTACAACTTATGTTTTATGTTTATACAGTTAACTATTCCATTGCCAGCCATGTTCACATTTCCTTTGTT TTTCAGGTATGACAAGCCTGTGAAGGGAAGGAAAATTAATTGGATGAAGGCTGCTATATTAGAATCCAATCGAGTGTTCA CTGTAAGTCCGTATTATGCCCAGGAACTTGTTTCTGGAGAGGACAGAGGTGTGGAATTGGACAATATTATTCGTAAAACT GGCATCACTGGTATCGTGAATGGCATGGATATCCGAGAGTGGAGTCCAGAAACTGATAAGTTCATAGATGTACACTATGA TGCAACAACTGTAAGTGGCACCTTCTCTGCTACATTTGGTTCCCTCGTTGACATAGGCCATAGAGATCCATGCTCATGAC AACTCTCATTTTTTAGGTCACTGAAGCGAAATCTCTGCTGAAAGAAGCTCTTCAAGCAGAGGTTGGCTTGCCTGTTGACA GGAATATCCCTTTGATAGGGTTCATTGGCAGGCTAGAAGAGCAGAAAGGTTCAGATATCCTTGTAGAAGCTATCCCTGAG TTCATTGACCAGAATGTTCAGATAATAGTTCTTGTAAGTGTCTTTGTCTTTGATTCAATTGTTCTTGTCTATTTCTTAGT CCATATTACTGATTCTGTTACCTGAACAAAGTTGAGCAGTTGATTCATATCCTTTTTTATTCAGGGAACTGGCAAGAAGA TCATGGAGAAGCAAATTGAACAACTGGAGGAAACGTATCCTGATAAGGCGATAGGGGTTGCGAAATTCAACGCTCCCTTG GCTCACAAGATTATTGCCGGAGCTGACTTCATAGTGATCCCAAGTAGATTTGAGCCCTGTGGTCTGGTTCAATTGCATGC TATGCCATATGGAACGGTAGAGTTTACGTGCAATGTTTTCTCTATTTCGCTCTCATCTTTACATTGGTGTGTTCCCTGAC AATTCTTGTAATTGTTCGTACATTATATGCCCACAACAGGTGCCCATAGTGTCATCAACTGGTGGACTCGTTGACACTGT AAAAGAAGGTTATACTGGATTCCACACGGGAGCGTTCAATGTAGAAGTAAGTCGAGTCCTTTTTTTTCTTTAATTCGATA GAGGGATGAAACTTAAAGATTATAACTTGGGTTTTTATCTTCAGTGTGAAACTGTTGATCCAGCCGATGTGGATAAGTTA GCCACTACTGTTAAGAGAGCCCTGCAAACCTATGGTACCCCGGTCTTGAAAGAGATGATCCAGAACTGCATGGCCCAAGA CTTTTCATGGAAGGTAATCATTCAGCAACTTTTGTTTTGTTCATAGCATATAGAAGAATCTGGGTATAGGAGAAACTATT TCTCTATTGAGATTAGGAAATATATTTGATATAATAAGGAATATATGAAAACTAATCCGGTGATCCTATCTTCCTAATTT GATAATATAGTTATAATTACATATCAGATATAATTTCTAATGGATGTTAGCATGTTACACCTCTATGGGCATGAACCATG GAGGAAAATGCAGTTCACTTAATCATTGAGTAATTCTTATACAGGGACCAGCCAAACAATGGGAAAAGGCGCTATTGAGC CTAGAGGTTGCTGGTAGTGAAGCTGGAATAGATGGGGAAGAGATTGCTCCTCTTGCAAAGGAAAACGTCCCTACTCCTTG A
CDS sequence (LotjaGi5g1v0201300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACTGTAACGGCCTCATCATACGCGGTGTCAAGAAGCGCGTGCCTCAACCGCCATGGAAGAACAGACTCTGCTGC TGCCAAAGTGAATTCGGTGACTCTCGGTGGCCACGCGCTGGTTTACGATGGGTTGAGATCTCTCAACAAGTTGCACGTGC GATCCGCACGTGCGGTGAAAGGCTTGTCGTCGACGGCGAGTGACGGAGGAGCCGCGCGTGGTAAGGCTTCCGGGGAGGTT GTGTGTGGGATGAACTTGGTGTTCGTCGGAGCTGAGGTCGGACCTTGGAGCAAAACTGGTGGACTCGGTGATGTTCTTGG AGGACTTCCACCTGCTTTGGCAGGAAATGGGCACCGTGTGATGACAGTGTCGCCGCGGTATGATCAATACAAGGATGCAT GGGACACCAATGTGACGGTGGAGGTCAAAGTTGGAGATAGAGTAGAAACTGTCCGTTTCTTTCACTGCTACAAGCGAGGA GTTGATCGTGTTTTTGTGGATCACCCAATGTTCCTTGAGAAGGTTTGGGGCAAAACTGGGTCGAAACTCTATGGCCCTAC GGCTGGAGTGGATTATGAAGATAACCAACTTAGATTCAGCTTGTTGTGCCAGGCTGCACTTGAGGCACCTAGGGTTTTGA ACTTAAATAGCAGCAAATATTTCTCTGGACCATATGGCGAAGATGTAGTCTTCATTGCTAATGATTGGCACACTGCTCTT CTTCCATGCTACTTGAAATCAATGTACAAGTCCAGGGGGATTTACCAAAATGCAAAGGTTGCGTTTTGTATTCATAACAT AGCCTACCAGGGTAGGAATGCCTTTTCAGACTTCTCTCAACTCAATTTACCTAACCAATTCAAGAGCTCTTTCGACTTTA CTGATGGGTATGACAAGCCTGTGAAGGGAAGGAAAATTAATTGGATGAAGGCTGCTATATTAGAATCCAATCGAGTGTTC ACTGTAAGTCCGTATTATGCCCAGGAACTTGTTTCTGGAGAGGACAGAGGTGTGGAATTGGACAATATTATTCGTAAAAC TGGCATCACTGGTATCGTGAATGGCATGGATATCCGAGAGTGGAGTCCAGAAACTGATAAGTTCATAGATGTACACTATG ATGCAACAACTGTCACTGAAGCGAAATCTCTGCTGAAAGAAGCTCTTCAAGCAGAGGTTGGCTTGCCTGTTGACAGGAAT ATCCCTTTGATAGGGTTCATTGGCAGGCTAGAAGAGCAGAAAGGTTCAGATATCCTTGTAGAAGCTATCCCTGAGTTCAT TGACCAGAATGTTCAGATAATAGTTCTTGGAACTGGCAAGAAGATCATGGAGAAGCAAATTGAACAACTGGAGGAAACGT ATCCTGATAAGGCGATAGGGGTTGCGAAATTCAACGCTCCCTTGGCTCACAAGATTATTGCCGGAGCTGACTTCATAGTG ATCCCAAGTAGATTTGAGCCCTGTGGTCTGGTTCAATTGCATGCTATGCCATATGGAACGGTGCCCATAGTGTCATCAAC TGGTGGACTCGTTGACACTGTAAAAGAAGGTTATACTGGATTCCACACGGGAGCGTTCAATGTAGAATGTGAAACTGTTG ATCCAGCCGATGTGGATAAGTTAGCCACTACTGTTAAGAGAGCCCTGCAAACCTATGGTACCCCGGTCTTGAAAGAGATG ATCCAGAACTGCATGGCCCAAGACTTTTCATGGAAGGGACCAGCCAAACAATGGGAAAAGGCGCTATTGAGCCTAGAGGT TGCTGGTAGTGAAGCTGGAATAGATGGGGAAGAGATTGCTCCTCTTGCAAAGGAAAACGTCCCTACTCCTTGA
Protein sequence (LotjaGi5g1v0201300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVTASSYAVSRSACLNRHGRTDSAAAKVNSVTLGGHALVYDGLRSLNKLHVRSARAVKGLSSTASDGGAARGKASGEV VCGMNLVFVGAEVGPWSKTGGLGDVLGGLPPALAGNGHRVMTVSPRYDQYKDAWDTNVTVEVKVGDRVETVRFFHCYKRG VDRVFVDHPMFLEKVWGKTGSKLYGPTAGVDYEDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVVFIANDWHTAL LPCYLKSMYKSRGIYQNAKVAFCIHNIAYQGRNAFSDFSQLNLPNQFKSSFDFTDGYDKPVKGRKINWMKAAILESNRVF TVSPYYAQELVSGEDRGVELDNIIRKTGITGIVNGMDIREWSPETDKFIDVHYDATTVTEAKSLLKEALQAEVGLPVDRN IPLIGFIGRLEEQKGSDILVEAIPEFIDQNVQIIVLGTGKKIMEKQIEQLEETYPDKAIGVAKFNAPLAHKIIAGADFIV IPSRFEPCGLVQLHAMPYGTVPIVSSTGGLVDTVKEGYTGFHTGAFNVECETVDPADVDKLATTVKRALQTYGTPVLKEM IQNCMAQDFSWKGPAKQWEKALLSLEVAGSEAGIDGEEIAPLAKENVPTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 610 | 610 | 0.0 | – | |
| PANTHER | 1 | 610 | 610 | 0.0 | – | |
| SUPERFAMILY | 83 | 580 | 498 | 1.54E-117 | – | |
| Hamap | 84 | 585 | 502 | 33.476 | ||
| TIGRFAM | 84 | 583 | 500 | 7.2E-154 | ||
| CDD | 85 | 580 | 496 | 0.0 | – | |
| Gene3D | 86 | 576 | 491 | 4.3E-181 | – | |
| Pfam | 86 | 346 | 261 | 1.1E-73 | ||
| Gene3D | 357 | 567 | 211 | 4.3E-181 | – | |
| Pfam | 402 | 527 | 126 | 4.9E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Glycogen (starch) synthase activity | Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1). |
Expression pattern of LotjaGi5g1v0201300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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