Domain Predictions — View

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TIGR02095

Source: TIGRFAM

Description

glgA: glycogen/starch synthase, ADP-glucose type

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004373 View details of GO:0004373 AmiGO InterPro QuickGO	Molecular function	Glycogen (starch) synthase activity	Catalysis of the reaction: UDP-glucose + (1,4)-alpha-D-glucosyl(n) = UDP + (1,4)-alpha-D-glucosyl(n+1).	Subterm of GO:0035251

Associated Lotus transcripts 16

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v2975950.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase IIb precursor [Lotus japonicus] gi\|221063676\|gb\|ACL98482.1\|	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 PF00534 PF08323 PTHR12526 PTHR12526:SF337 SSF53756 TIGR02095 cd03791	11
Lj1g3v2975950.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase IIb precursor [Lotus japonicus] gi\|221063676\|gb\|ACL98482.1\|	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR12526 PTHR12526:SF337 SSF53756 TIGR02095 cd03791 mobidb-lite	13
Lj2g3v1058180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase IIa precursor [Lotus japonicus] gi\|221063674\|gb\|ACL98481.1\|	Domains G3DSA:3.40.50.2000 IPR011835 IPR013534 MF_00484 NON_CYTOPLASMIC_DOMAIN PF08323 PF13692 PTHR12526 PTHR12526:SF337 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53756 TIGR02095 cd03791 mobidb-lite	17
Lj2g3v1058190.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase IIa precursor [Lotus japonicus] gi\|221063674\|gb\|ACL98481.1\|	Domains G3DSA:3.40.50.2000 IPR011835 IPR013534 PF08323 PF13692 PTHR12526 PTHR12526:SF337 SSF53756 TIGR02095 cd03791	10
Lj3g3v2515230.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Granule bound starch synthase Ib precursor [Lotus japonicus] gi\|170676395\|gb\|ACB30385.1\|	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 PF00534 PF08323 PTHR12526 PTHR12526:SF383 SSF53756 TIGR02095 cd03791	11
Lj4g3v0281070.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic-like [Cicer arietinum] gi\|502141922\|ref\|XP_004504704.1\|	Domains Coil G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 NON_CYTOPLASMIC_DOMAIN PF00534 PF08323 PTHR12526 PTHR12526:SF304 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53756 SignalP-TM_GRAM_POSITIVE TIGR02095 cd03791 mobidb-lite	20
Lj5g3v1262950.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Granule bound starch synthase Ia precursor [Lotus japonicus] gi\|170676393\|gb\|ACB30384.1\|	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 PF00534 PF08323 PTHR12526 PTHR12526:SF383 SSF53756 TIGR02095 cd03791	11
LotjaGi1g1v0287000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT5G24300.1 Glycogen/starch synthases, ADP-glucose type; Swiss-Prot: sp\|P93568\|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|X5CTV8\|X5CTV8_LENCU Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi1g1v0287000	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 NON_CYTOPLASMIC_DOMAIN PF00534 PF08323 PTHR45825 PTHR45825:SF11 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53756 TIGR02095 cd03791	17
LotjaGi1g1v0504200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT3G01180.1 starch synthase 2; Swiss-Prot: sp\|Q43093\|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B9VJS9\|B9VJS9_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi1g1v0504200	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR45825 PTHR45825:SF12 SSF53756 TIGR02095 cd03791 mobidb-lite	13
LotjaGi1g1v0504200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT3G01180.1 starch synthase 2; Swiss-Prot: sp\|Q43847\|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B9VJS9\|B9VJS9_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi1g1v0504200	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR45825 PTHR45825:SF12 SSF53756 TIGR02095 cd03791	12
LotjaGi2g1v0259700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT3G01180.1 starch synthase 2; Swiss-Prot: sp\|Q43093\|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B9VJS8\|B9VJS8_LOTJA Starch synthase IIa; Found in the gene: LotjaGi2g1v0259700	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 NON_CYTOPLASMIC_DOMAIN PF00534 PF08323 PTHR45825 PTHR45825:SF12 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53756 TIGR02095 cd03791 mobidb-lite	18
LotjaGi3g1v0403200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT1G32900.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|O82627\|SSG1_ANTMA Granule-bound starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B2CP02\|B2CP02_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi3g1v0403200	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR45825 PTHR45825:SF10 SSF53756 TIGR02095 cd03791	12
LotjaGi4g1v0025200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase; TAIR: AT4G18240.1 starch synthase 4; Swiss-Prot: sp\|Q0WVX5\|SSY4_ARATH Probable starch synthase 4, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|A0A0B2R1U3\|A0A0B2R1U3_GLYSO Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi4g1v0025200	Domains Coil G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 NON_CYTOPLASMIC_DOMAIN PF00534 PF08323 PTHR46083 PTHR46083:SF2 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53756 SignalP-TM TIGR02095 cd03791 mobidb-lite	20
LotjaGi5g1v0201300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT1G32900.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|Q43092\|SSG1_PEA Granule-bound starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B2CP01\|B2CP01_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi5g1v0201300	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR45825 PTHR45825:SF10 SSF53756 TIGR02095 cd03791	12
LotjaGi5g1v0201300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT1G32900.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|Q43092\|SSG1_PEA Granule-bound starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B2CP01\|B2CP01_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi5g1v0201300	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR45825 PTHR45825:SF10 SSF53756 TIGR02095 cd03791	12
LotjaGi5g1v0201300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Starch synthase, chloroplastic/amyloplastic; TAIR: AT1G32900.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|Q43092\|SSG1_PEA Granule-bound starch synthase 1, chloroplastic/amyloplastic; TrEMBL-Plants: tr\|B2CP01\|B2CP01_LOTJA Starch synthase, chloroplastic/amyloplastic; Found in the gene: LotjaGi5g1v0201300	Domains G3DSA:3.40.50.2000 IPR001296 IPR011835 IPR013534 MF_00484 PF00534 PF08323 PTHR45825 PTHR45825:SF10 SSF53756 TIGR02095 cd03791	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd03791	CDD	1	6.25