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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0222300 |
| Transcript ID | LotjaGi5g1v0222300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9SW44|RH16_ARATH DEAD-box ATP-dependent RNA helicase 16; TrEMBL-Plants: tr|A0A0B2Q3E8|A0A0B2Q3E8_GLYSO DEAD-box ATP-dependent RNA helicase 16; Found in the gene: LotjaGi5g1v0222300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52920699..52928066) extracted from Lotus japonicus Gifu genome v1.2.
GAGCAAACAACCGGAGAAACCGCACCCAAACAAACCGTCAACGAATACGAAGAAGAAATCGATGACCAGAGCTTCGAAGA CCTCGGTTTAGACCCTCGTCTCGTCCGTGCCTTACTCAAGAAAGGAATCGAAAAACCCACTCCCATTCAGCGCGTCGCGT TTCCATTGATGCTGGTAACTTCCCCTTCCACCTTAAACTCACTGTTAATTCAGTTCTTCATCTTCAGTTTCCATAACCTG GTTTCCCTCTCTGGTTTCAGGAAGGTAAAGATGTGGTTGCTCGAGCAAAAACCGGTTCTGGAAAAACGTTCGCGTATCTT CTCCCGTTGCTTCAGAAACTGTTTACTGGTAGTGAGGATAGGAAGAAGCTTGCTCCTAATGCTTTCGTTCTTGTTCCAAC TCGTGAACTGTCTCAACAGGTGAATTCACTTTTTTCCTCTTTTGCCCCTCAATTTCTGTTTTTTTTTTCTTCCATTGGAT AAATAAATTGATTTCATGTTGGTTTGATATTTAATTTTAGGTGTATACGGAGGTCTTGTCACTCATTGAGATATGCAAGG TTCAGCTGAAAGTTGTGCAGTTGAATAGCAATATGCTTAACAATGACTTGGTTCGTTATGTTATGCCCTATATGAATTTT TTGATTTGTCGAGATTATATTCGAATTCGATAGTTATTTTAGAATGTGTAGTTGAATAAATGTCTCTAATTTGGGTTTGC AGCGGGCGGCACTGGCTGGTCCACCTGATGTTTTGATCTCGACGCCTGCTTGCGTAGCTAAGTGCTTGTCGGGAGGTGTA CTACAGGCGGCGTCCATTAATGCTTCGCTTGAAACTCTAGTTCTCGATGAGGTGAAATCATATATTTAATCTATTGATTT TGAGTATTTATGTTTGGTATTAGGGTATATTCGGTTTATGAAAATGGTATCTGGTTTCACCAATGATTGCACTAGTTAGT TGACGCTAATTCAAGTAGTCAGTGGACAATCATTGACTGTTCCGTTCATTGTTTGTATCAATGGTTTCAGGCAGATCTTC TACTATCTTATGGGTATGAAGAGGATATAAAAGCTCTTACACCTCATGTACCACGAAGTTGCCAATGTCTTCTAATGTCT GCAACATCAAGGTGTGTTATTTATTGTGTTTTTGCCACTTTTCCATGTTTGTGCTCAAATGCTTTGTGATATAATGGGGA TGCAACATCTCTCGTTCTTCATTTCTTTCCTGATGTTCTTGCATTTCATTTTGTTTCTCTTCTTTTATTTGATAGTTTGA ATCTGAAAACAATCTTTCTTGCGCTTTTGAAGATTTGATATATGCTTGTTATCAACAAAATGTCCTAAGGATTACATTAT CCATGTGCTTGCTGTTAGCAAAATGTTATCTCTGTGACGTTTTACTGGCTGAGTATTTTGCTGTGTTTGACCAATCTGTG TCATTATTTTGTGATTATTAGTCTTGCATGAAATGAAATCATGGCCTATTATTTAATCCCTCTTCAATTGTATCCAACTA TCAATTTATTTCTAATGTACTGTTATCTTCTGCAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATT TGTTTTGACTTTGCCTGAAGTGGGAAATCATAAGGATGACATCATCCCAAAAAATGTTCAGCAGTTCTGGGTAAGAGATT CTACTTCTTTTTTCTACCTGTCTTTTTGATATTACAAAGTTAATTGTGGTTAAGGTAATTCCTTATTATATGTGCAAAAA TATGGCATTATTTCTTTCTATGGAGAAGGCAGCCACCTTCTTTCCATATCCGGGATCTGTCCTGTATTATTTGATACTTA GAGGAAATGAACCATGATGGAAAGGAAATATTTTATTCAGATGGAAATGAGTGCTTGAAATAAAGATGTCATTTGAGTCA CTGATCCTCCAAAAAAATGTTAAGCTTTTTTATGAGTTTAAAATATTGCATATTGATATTGTTGGCTATTAAGGATATAT TATGCTTCCACCTAGGGGGTGCTTGAAAGCTGTCATTTTGTGTAATAGGGTTTAGATGCTAATTTGCTTATATATTATTA TTTTTTAAATATACTTCTTTCATCTTGCCTGTTGACTTCTGATTCAATATTTTTTATGTGGAGTTGATAACCTTTTAACT GTTTTCAATTGTGTCAGATCTCATGTCCTGCCAGTGACAAGTTGCTCTACATCCTTGCTATATTGAAGAATGGGTTGGTT CATAAGAAAGTACTAATATTCACTAATACCATAGACATGGGTTTCAGATTGAAACTATTCTTGGAAAAGGTATGTGTTTG ATATAAAAACATTCATAGGCCCTCACCTAACAAGTTTAAGCATTTGAGATAGTGAACTAATGACTTCGTATTAGAGCTTC TATGATCAGCGGTATAAGTTTGATCCTTGCTATCTTCATTCATCTTAATAAAAGTTAATTTTAGCGTAGGATAGAGTGGA CCTTTGCATTGTGGTTTCCATTGTGAGGGGATCATTAGATATAACACCATTCATGAACCTCCATCGAAGATTGAACGGCT TAAGCTTGGGGATAGTTAATTCTTGAAATATTGTTAGGACCCGAAAATCCTAACGTGGTGAAACATAAGGGAAAAATATA ATAAAGGTTAATATTTTTGTATTTTATTATAAAAGACTGGAAAATAAAGATAGATAAGAACTAAGAGGCTGGTTCCTCTT AGAACCATGAGGCTGGTTCCTCTTCAATAAGGCTGGTTCCCTTTACAAACTCAATAATCTAATCCATAACTCTAACCTAA AGAGGGCACTCCTATTTATAATAACTAATCCCAATATCAATAACTTAATCCCTAAGAAATACATAAGATATACTACTAGA ATAAGAGATAACATCCTAATATAAAAGATACTATAAAGATAGATTCCTAAATTAAAATAAATTAAATCCTAATATAATTA ATCCTAACAATACTCCCCCCCTAAAATCAACCTTGTCCTCAAGGTTGGAAGTAGCATAGTAGATCCAATCTTCCCCTCCC GGGTCCCATTGTAGGCGGCAATCCGAGCGAGGCGCCAGAACAGCAAGTGTCCAAGTGTCCAGATCTGGCGGCATTGGAGG AGGTCGCTTGGACAACACATTGAGTACCCATAGTGGCATCGGTATTGAGGGTGCACCCCTCCGCGTTGAATGACCAACTT TGTTCACAAATACCAATGTTAATTGTGTACCCAGATGCTTGAAATCGTCTGTATTGCCAAATTTTTCAATCATAACAGCA TTCACAGACATTGACAACGGAGCATCTACCATAGAGATTGTGCTGATGTGAGGCATATTGGCAACATCTTCTTGGGGACC TTCTAGCGGAAAAGTAGTGTCTTGCTTGGACTCATTAGAAGTCTCAGAAGTCAGCGCAACATGTGGATTGCTTGAGTCCT CCGTCAGTACGTCTTCGCTTGAGTCCTCCTTGAGTATGCCTTCTTCTTCCACCGAAATACTAGCAACGGTTTCCCCTTCG GTGTTAGAAGGCGAGGGGAGAGAAGCCTCTGGAGTCAGTGATTGTTCTTCAGCACGGCAAAATTCTGAATCAATTTCTCG AGCAATCTCCATGGCACGCAACAAAGTTGTAGGATGGAAAGAACGCAACCTAAGACGAACCACCAGTCTGAGGCCCCGCT GAAAACACTCCAACAACCGCTCTTCAGAAAGATCAGGAACATGGGCCACCCAAAGCTTCGAATTCCCGCACATAAGCGTC AACAGTACTGCTTTGTCGGAGAGTGTTCAGCCTCTTGTAAACGTTAGCACGATACTCGACACCAAAACGTTGAAGCAAGA GGGAGATGAAGCGATTCCAAGTGAGATCGAGATCTTGATAACAGCAACAATAAAACCAATTAGTGGCCTTCTCCCCGTCC ATGCTAACGGATGCCAATTGCAACTTATCTAGATCCCGCTGCAAATTGTCGACCTCAAAGATTTTCTCGGCCCGAGCAAT CCAAGACACCGGATCCACTCCGTCAAACTTGGGAAACTCCTCGACAATAGACTGCCATTCTTTCATTGAAAGGGCCATGA TGGCAAGAACTTCTGGAAATAAAATAAAATTATCGCCCAGAACAGCCAATCAAAGCGTGAATGGACAGGTGCGTGTAAGC AAAACCCAATTTGTGACGTGAACAGTGACGTGAACAGTGACGTGAACAGTGACGTGAACAGTGACGTGAACAGTGACGTG AACAGTGACGTTTTGTTTTGCTGCAACGAAGTGACAACTGGAAGTGGCAGGTGTGGTAGAATCAAAGAGGAAGTGTAATG GTGCGTGCGGTAGCTGGCGGAATTTCGATCCGGCAGGTCGGACCAATTGTTAGGACCCGAAAATCCTAACGTGGTGAAAC ATAAGGGAAAAATATAATAAAGGTTAATATTTTTGTATTTTATTATAAAAGACTGGAAAATAAAGATAGATAAGAACTAA GAGGCTGGTTAATATTTTTGTATTTTATTATAAAAGACTGGAAAATAAAGATAGATAAGAACTAAGAGGCTGGTTCCTCT TAGAACCAAGAGGCTGGTTCCTCTTCAATAAGGCTGGTTCCCTTTACAAACTCAATAATCTAATCCGTAACTCTAACCTA AAGAGGGCACTCCTATTTATAATAACTAATCCCAATATCAATAACTTAATCCCTAAGAAATACATAAGATATACTACTAG AATAAGAGATAACATCCTAATATAAAAGATACTATAAAGATAGATTCCTAAATTAAAATAAATTAAATCCTAATATAATT AATCCTAACAAATATGCATTCAGTAAATTGAATCATCCACCTTATCTCACATGTTACATCAAACATGTCATTTTGTTTTT GTTTACATCATATAGCCATTCATGAACCTCCATTGAAGATGGAATGGATTAAGCTTGGGGATAGTTGATTTTTGACATGC ATTCAAAAAATTAAATCCACCTGATCTTACATGTTTCATCAGACATGTCATATTTTATTTTTAGTAATTCACAATGATTT TCATACTGTGTCAGTTTAATGAATAATAGTTAATAAACAGTTTTTTCTGCATCCTTTTTTTACCTTCAATATGTCTGCTC AAGATGTTTTGGATTAAGTTTTCAATCAAATTTGGAAGATCATGCTTCTATTCCAGTCTAAACATTTATAGATGTAGTAG GATTATTTTATTGTCATCATTGTTCCTCTCATTTCCCCCTATATTCTTCCAGTTTTGGATCAAGTCTGCTGTTTTAAATG CTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGTATTGAATATTGTCCGTTTTACTTCTCTCTAGACAGATAAA TAGGGCTGGAGATAGTATTTGTCATTTAAAGATCTATATTTTCTCACATGTTTTTGATAAACCTGTTTTCATCAGGAATT CAATGCCGGCCTATTTGATTATCTAATTGCAACGGATGTCAGCCAGTCAAAAGAGAAGGATGAAGCACCTAAGGAAAGTA ATGTTGGATCACGGAAGTCTAGAAAGCAGGCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGTTAGGGGGATTGACTTT AAAAATGTATACACGGTACGCAAGTCATCTCTAATAAGTTATATCTCTTTACGATATGTTTATCTAATATGCACATTTTT GGAGTTATTATGCTGTATGTCATTTTTGTAAGAGTTATTTACCATTGTAAATTTTGTCTTCTGGTTTATATCTTTGCTCA ATGGGGGAAAATGCCCTGTTCATTGAAATCATTTAGTTAATGCTTACTCTTGTTGATGAACAGGTTATAAACTTTGATAT GCCTGAAAGTGTAGAAGGATACGTGCATCGAATTGGACGCACAGGAAGAGCATACAATTCTGGTACTTCTATATCTCTGG TGAGTTTGTTAGATTAACAAAGTCCCTCTTTTCCACTGAGTAAATTTCTAGTTGTATTATTACTGTTAGATTTTTGTCTC TAACCGGTACCGACGTACCGTACTATTGGGTGTATTATTGAGGTCCAAGGTAGCACCAAACTACATAATGCTGGGACATT GAGATTTTCTTTGCTTCTTTATAGGTTTCTCCGGACGAGATGGATACTCTAGAAGAAATAAGAGATTTCATTGGGGATGA TGAAAACAAGGGCTCAAACTCACTTCTTGAGTTTCCCAAGCTCACCAAGAATGCAGTTGAAAACTTGCGGTATAGGGCTG AGGTGATTTGTCATTTCCTTTATTCTTGAAACAAAAGCATCTTAGTATTGCATATAATGCATCAACCAGTCAGAGCCTTT TAAACTGACTTGGTATCTTTTGTTTCACTATAAACTTCTGATTAAGAATCCTCTAGTTTGAAAATGACAAGGAGGGAAAC ATCATATTTGTGATTCTCATATTATTTCTGTCTTAGGAAAACTTGAGAATATTGAGATATCTTGCATGTATTCTCAGCTG TTCTCCTTTTAAATGAAAATTATATGGAGGATATTTTGCAGCTCTGTTATTTTATCTGATTTAGCTGGTTTTGCAAATAG CATTGATGATTGGCATTATATTGCAGGATACAGCAAAGAGCGTAACTAGAATTGCTGTCAGAGATTCACGAGCCCAGGAC TTAAGAAATGAAATTTTGAACTCCGAAAAGTGAGTGACTGGTATTACATGTGTTATATGCTTGAGAATTGTAACTGTTAT GTTAAATGTTATTCCCTTTCTAACCCGTTCCTGTTCACCTGTGTTTTTCTGTCTTAGGTTGAAGGCACACTTTGAAACTA ATCCAAGAGACCTAGGTAAACGTTATTGATTGATTTTATTGTTACTGTGTCCTGTGGGCATTTATCATTCGCACTTTTAT GTTTGAAGAAGTTAAACTTAAAGGATCTAAATTGTATTTGAGCAGACCTATTGAAACATGACAAAGTTTTGAGCAAGAAC GCCCCTCCTCTACACCTTCGTAATGTCCCTGACTACCTGTTAGACAAAACAACAAAAGAGGCAAGGGACATGGTCAAGCT TGCAAGTGATGCAATGGGAAATAATAACAATCGCCGCAGGGGGGGATCCAAGAAAAAGATAAGAAAAAGCGGAGACCCTC TGAAGGCCATCTCTGCTGGGGTATGATCTTTTCCCTTGGATTTGACCTCCTTCCTAATTTATGCCAATTCTGAATCTTGA ATCTTAAATGAAGGAAAGGAAACTAAAATTCCTGACATGAGTTTTGCCTTTAAAATAGTTGTATAGATATTAGATGAAAA ATAATCTTTTTGCATAGAGCCATTAGATTTTATATCGATTTTAGTAAATATTGTTAATATAACCTTGCATAGATCTAAAT ATAAATTC
CDS sequence (LotjaGi5g1v0222300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGAAGGTAAAGATGTGGTTGCTCGAGCAAAAACCGGTTCTGGAAAAACGTTCGCGTATCTTCTCCCGTTGCTTCA GAAACTGTTTACTGGTAGTGAGGATAGGAAGAAGCTTGCTCCTAATGCTTTCGTTCTTGTTCCAACTCGTGAACTGTCTC AACAGGTGTATACGGAGGTCTTGTCACTCATTGAGATATGCAAGGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAATATG CTTAACAATGACTTGCGGGCGGCACTGGCTGGTCCACCTGATGTTTTGATCTCGACGCCTGCTTGCGTAGCTAAGTGCTT GTCGGGAGGTGTACTACAGGCGGCGTCCATTAATGCTTCGCTTGAAACTCTAGTTCTCGATGAGGCAGATCTTCTACTAT CTTATGGGTATGAAGAGGATATAAAAGCTCTTACACCTCATGTACCACGAAGTTGCCAATGTCTTCTAATGTCTGCAACA TCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCATTTGTTTTGACTTTGCCTGAAGTGGGAAATCA TAAGGATGACATCATCCCAAAAAATGTTCAGCAGTTCTGGATCTCATGTCCTGCCAGTGACAAGTTGCTCTACATCCTTG CTATATTGAAGAATGGGTTGGTTCATAAGAAAGTACTAATATTCACTAATACCATAGACATGGGTTTCAGATTGAAACTA TTCTTGGAAAAGTTTTGGATCAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGA ATTCAATGCCGGCCTATTTGATTATCTAATTGCAACGGATGTCAGCCAGTCAAAAGAGAAGGATGAAGCACCTAAGGAAA GTAATGTTGGATCACGGAAGTCTAGAAAGCAGGCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGTTAGGGGGATTGAC TTTAAAAATGTATACACGGTTATAAACTTTGATATGCCTGAAAGTGTAGAAGGATACGTGCATCGAATTGGACGCACAGG AAGAGCATACAATTCTGGTACTTCTATATCTCTGGTTTCTCCGGACGAGATGGATACTCTAGAAGAAATAAGAGATTTCA TTGGGGATGATGAAAACAAGGGCTCAAACTCACTTCTTGAGTTTCCCAAGCTCACCAAGAATGCAGTTGAAAACTTGCGG TATAGGGCTGAGGATACAGCAAAGAGCGTAACTAGAATTGCTGTCAGAGATTCACGAGCCCAGGACTTAAGAAATGAAAT TTTGAACTCCGAAAAGTTGAAGGCACACTTTGAAACTAATCCAAGAGACCTAGACCTATTGAAACATGACAAAGTTTTGA GCAAGAACGCCCCTCCTCTACACCTTCGTAATGTCCCTGACTACCTGTTAGACAAAACAACAAAAGAGGCAAGGGACATG GTCAAGCTTGCAAGTGATGCAATGGGAAATAATAACAATCGCCGCAGGGGGGGATCCAAGAAAAAGATAAGAAAAAGCGG AGACCCTCTGAAGGCCATCTCTGCTGGGATCTAA
Protein sequence (LotjaGi5g1v0222300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEGKDVVARAKTGSGKTFAYLLPLLQKLFTGSEDRKKLAPNAFVLVPTRELSQQVYTEVLSLIEICKVQLKVVQLNSNM LNNDLRAALAGPPDVLISTPACVAKCLSGGVLQAASINASLETLVLDEADLLLSYGYEEDIKALTPHVPRSCQCLLMSAT SSADVDKLKKLILHNPFVLTLPEVGNHKDDIIPKNVQQFWISCPASDKLLYILAILKNGLVHKKVLIFTNTIDMGFRLKL FLEKFWIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKESNVGSRKSRKQAKLKLDSEFGVVRGID FKNVYTVINFDMPESVEGYVHRIGRTGRAYNSGTSISLVSPDEMDTLEEIRDFIGDDENKGSNSLLEFPKLTKNAVENLR YRAEDTAKSVTRIAVRDSRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPLHLRNVPDYLLDKTTKEARDM VKLASDAMGNNNNRRRGGSKKKIRKSGDPLKAISAGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 181 | 181 | 2.2E-43 | – | |
| SMART | 1 | 199 | 199 | 6.9E-28 | ||
| ProSiteProfiles | 1 | 179 | 179 | 24.102 | ||
| Pfam | 2 | 168 | 167 | 4.1E-31 | ||
| SUPERFAMILY | 2 | 362 | 361 | 2.65E-48 | ||
| PANTHER | 2 | 471 | 470 | 4.5E-89 | – | |
| PANTHER | 2 | 471 | 470 | 4.5E-89 | – | |
| CDD | 2 | 181 | 180 | 1.02582E-79 | – | |
| CDD | 196 | 359 | 164 | 1.05438E-43 | – | |
| Pfam | 207 | 350 | 144 | 1.9E-34 | ||
| ProSiteProfiles | 208 | 396 | 189 | 13.507 | ||
| SMART | 236 | 350 | 115 | 1.8E-20 | ||
| MobiDBLite | 284 | 303 | 20 | - | – | |
| Coils | 420 | 440 | 21 | - | – | |
| MobiDBLite | 485 | 517 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi5g1v0222300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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