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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001650
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 509 results. Now displaying 1 of 11 with 50 rows per page. This search has taken 5.830s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0014299.1
n.a. PREDICTED: DNA repair protein rhp26-like [Cicer arietinum] gi|502114921|ref|XP_004495082.1| chr0 5479405 5486022 +
4 domain predictions
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Lj0g3v0041629.1
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
4 domain predictions
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Lj0g3v0041629.2
n.a. PREDICTED: dicer-like protein 4-like [Glycine max] gi|356565129|ref|XP_003550797.1| chr0 13681900 13712650 +
4 domain predictions
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Lj0g3v0050249.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Glycine max] gi|356563121|ref|XP_003549814.1| chr0 17066995 17071627 -
4 domain predictions
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Lj0g3v0054419.1
n.a. PREDICTED: Werner syndrome ATP-dependent helicase-like isoform X1 [Cicer arietinum] gi|502129734|ref|XP_004500407.1| chr0 17451173 17455169 -
4 domain predictions
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Lj0g3v0055059.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] gi|356572874|ref|XP_003554590.1| chr0 17701136 17705897 +
4 domain predictions
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Lj0g3v0055519.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine max] gi|356507351|ref|XP_003522431.1| chr0 17935595 17940819 -
4 domain predictions
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Lj0g3v0057069.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 52-like [Cicer arietinum] gi|502151581|ref|XP_004508511.1| chr0 18628709 18631852 +
4 domain predictions
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Lj0g3v0060759.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like isoform X2 [Cicer arietinum] gi|502081287|ref|XP_004486821.1| chr0 20260185 20264457 +
4 domain predictions
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Lj0g3v0068189.1
n.a. PREDICTED: transcriptional regulator ATRX-like [Cicer arietinum] gi|502178492|ref|XP_004516267.1| chr0 24379633 24380640 -
4 domain predictions
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Lj0g3v0072849.1
n.a. PREDICTED: F-box protein At3g54460-like [Glycine max] gi|356541572|ref|XP_003539248.1| chr0 27153265 27160791 +
4 domain predictions
 –
Lj0g3v0084329.1
n.a. PREDICTED: ATP-dependent DNA helicase RecG-like isoform X3 [Cicer arietinum] gi|502123899|ref|XP_004498303.1| chr0 33482812 33490207 -
4 domain predictions
 –
Lj0g3v0103029.1
n.a. PREDICTED: DNA repair protein rhp54-like [Glycine max] gi|356544159|ref|XP_003540522.1| chr0 43885968 43890252 -
4 domain predictions
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Lj0g3v0110109.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine max] gi|356499257|ref|XP_003518458.1| chr0 47752139 47762218 -
4 domain predictions
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Lj0g3v0126049.1
n.a. PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like [Cicer arietinum] gi|502139411|ref|XP_004503757.1| chr0 56681371 56685755 -
4 domain predictions
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Lj0g3v0138089.1
n.a. DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357492817|ref|XP_003616697.1| chr0 63330662 63332584 -
4 domain predictions
 –
Lj0g3v0187429.1
n.a. Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 [Medicago truncatula] gi|357478809|ref|XP_003609690.1| chr0 91443272 91444393 +
4 domain predictions
 –
Lj0g3v0188739.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHR1-like [Glycine max] gi|356506353|ref|XP_003521949.1| chr0 92253882 92260923 -
4 domain predictions
 –
Lj0g3v0190499.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cicer arietinum] gi|502128963|ref|XP_004500137.1| chr0 93121919 93127115 -
4 domain predictions
 –
Lj0g3v0195829.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX29-like isoform X1 [Cicer arietinum] gi|502126630|ref|XP_004499378.1| chr0 95538193 95543632 -
4 domain predictions
 –
Lj0g3v0195839.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX29-like isoform X1 [Cicer arietinum] gi|502126630|ref|XP_004499378.1| chr0 95538874 95543632 -
4 domain predictions
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Lj0g3v0205299.2
n.a. PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max] gi|356547300|ref|XP_003542053.1| chr0 102101318 102102728 -
4 domain predictions
 –
Lj0g3v0205309.1
n.a. PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max] gi|356547300|ref|XP_003542053.1| chr0 102102277 102102728 -
3 domain predictions
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Lj0g3v0209329.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine max] gi|356519355|ref|XP_003528338.1| chr0 104933873 104939786 -
4 domain predictions
 –
Lj0g3v0210949.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHR1-like [Glycine max] gi|356506353|ref|XP_003521949.1| chr0 106172230 106176681 +
4 domain predictions
 –
Lj0g3v0215649.1
n.a. DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357503527|ref|XP_003622052.1| chr0 109319112 109321654 +
4 domain predictions
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Lj0g3v0216549.1
n.a. PREDICTED: transcriptional regulator ATRX homolog [Cicer arietinum] gi|502158015|ref|XP_004510995.1| chr0 109974317 109974997 -
3 domain predictions
 –
Lj0g3v0228419.1
n.a. chromatin remodeling complex subunit [Populus trichocarpa] gi|224128974|ref|XP_002320469.1| chr0 118069691 118071003 -
4 domain predictions
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Lj0g3v0238469.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 123745271 123748239 +
4 domain predictions
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Lj0g3v0241739.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1| chr0 125463002 125465782 -
2 domain predictions
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Lj0g3v0244469.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Glycine max] gi|356560282|ref|XP_003548422.1| chr0 126844680 126846609 -
4 domain predictions
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Lj0g3v0245039.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Cicer arietinum] gi|502146038|ref|XP_004506292.1| chr0 127049994 127053584 -
4 domain predictions
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Lj0g3v0246069.1
n.a. Dead box ATP-dependent RNA helicase isoform 2 [Theobroma cacao] gi|508724625|gb|EOY16522.1| chr0 127445886 127452228 -
4 domain predictions
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Lj0g3v0250239.1
n.a. PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Fragaria vesca subsp]. vesca] gi|470142342|ref|XP_004306870.1| chr0 129717504 129724134 -
4 domain predictions
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Lj0g3v0258839.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine max] gi|356504849|ref|XP_003521207.1| chr0 134391357 134397770 -
4 domain predictions
 –
Lj0g3v0269349.1
n.a. chromatin remodeling complex subunit [Populus trichocarpa] gi|224122872|ref|XP_002318937.1| chr0 139537849 139549334 +
3 domain predictions
 –
Lj0g3v0271549.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 140673021 140679894 -
4 domain predictions
 –
Lj0g3v0273279.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Glycine max] gi|356520426|ref|XP_003528863.1| chr0 141625346 141640119 +
4 domain predictions
 –
Lj0g3v0282239.1
n.a. Helicase protein with RING/U-box domain [Theobroma cacao] gi|508714076|gb|EOY05973.1| chr0 146329668 146335635 +
4 domain predictions
 –
Lj0g3v0298949.1
n.a. PREDICTED: DEAD-box ATP-dependent RNA helicase 32-like [Glycine max] gi|356501519|ref|XP_003519572.1| chr0 155380623 155387217 +
4 domain predictions
 –
Lj0g3v0313299.1
n.a. Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1 [Theobroma cacao] gi|508774890|gb|EOY22146.1| chr0 163588504 163597827 +
4 domain predictions
 –
Lj0g3v0313299.2
n.a. Nucleic acid binding,ATP-dependent helicases,ATP binding,helicases,ATP-dependent helicases isoform 1 [Theobroma cacao] gi|508774890|gb|EOY22146.1| chr0 163588504 163597827 +
4 domain predictions
 –
Lj0g3v0322239.1
n.a. PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Glycine max] gi|356519100|ref|XP_003528212.1| chr0 168239618 168257141 -
4 domain predictions
 –
Lj0g3v0322239.2
n.a. PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Glycine max] gi|356519100|ref|XP_003528212.1| chr0 168239618 168251831 -
4 domain predictions
 –
Lj0g3v0322239.3
n.a. PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Glycine max] gi|356519100|ref|XP_003528212.1| chr0 168239618 168257141 -
4 domain predictions
 –
Lj0g3v0322239.4
n.a. PREDICTED: zinc finger Ran-binding domain-containing protein 3-like [Glycine max] gi|356519100|ref|XP_003528212.1| chr0 168239618 168257141 -
4 domain predictions
 –
Lj0g3v0326409.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356533151|ref|XP_003535131.1| chr0 170633599 170648023 -
4 domain predictions
 –
Lj0g3v0354659.1
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186796725 186819693 -
4 domain predictions
 –
Lj0g3v0354659.2
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186796725 186827230 -
4 domain predictions
 –
Lj0g3v0354659.4
n.a. PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max] gi|356516857|ref|XP_003527109.1| chr0 186819578 186827230 -
4 domain predictions
 –