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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0231900 |
Transcript ID | LotjaGi5g1v0231900.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Agenet domain-containing protein, putative; TAIR: AT1G09320.1 agenet domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|A0A1J7GLB7|A0A1J7GLB7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0231900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:53935178..53939394) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTCGGGTCGGATAGACACAAATATATATTTGATTGGTGGCATTATGCCCTATCTCTTTTTTGTGTAGTATAGTAGCA ATCCATTGAGTTTCAAATTCCCGCCAACACAACACACAGACACAGACACAGGTGCGTGCGTGCGTGAAACCCTAATCCGA TGGCACCCAAATCTGCCACCGCCGTCTCGCCCTTCCTGAAACCCGGTACCGCGGTGGAAGTCTGTTCCGAAGACGACGGT TTCCGCGGCTCCTGGTTCACCGGCAAGATCGTCCGCCGTCTCGCCAATAACAAGGTCTCGGTGGAGTATGATAGCCTGAC TGAGGACGACGAAGGCACCAAGCCCTTGAAAGAAACCCTGCACATTCGCCAGCTCCGGCCACTCCCCTTGCCGGAGACTC AACATGAGTTCAAATTCGGCGACGAGGTGGACGCTTACCACAACGACGGGTGGTGGGAGGGTCATATAACTGAGGAATTA GGGAATGGTAGGTTCGCTGTGTATTTCAGAGTCTCCAAGGAGCGGATCGAGTTTCCGAAAGAGGAGCTGAGGACTCACCG TGAATGGATTGATGACCATTGGGATCCGCCGTTCGAATTGCCGAAGCAGGAGGAGCAGGTATGCTTCTGTGTTGATTTTA GTTGAATTTTGTTATGATTTGTTGAATTAGGAGGATTTTAGGGTTAAATTGTATGGCTTAGGATGTTGCTGATTGTAAAT TTGTAATGCTGTTAATTAATTTAATAGGTGAATGAATCGAACAAGGTGTTGTTGACACCGAATGCGAAGTCTGAGGAAGC TGTGAACAAGGTGTTGTTGACACCGAAAGCGAAGTCTGTGGAAGCTGTGAACAAGGTGTTGTTGACACCAAATGTGGAGT CTGAGGAAGCTGTGAACAAGGTGTTGTTGACACCAAATGTGGAGTCTGAGGAAGCTGTGAAGCTGAAGAAGAAGGAGGAG TTGTTTTGCGTGGGGGCGTTGGTTGAGGTTAGCAGTGACGAAGAGGGTTTCCAAGGGGCTTGGTTTTCTGCCACCATTGT CGAGGTTATGGAACAGGAGAAGTTCCTGGTTGAGTACCATAACCTGACTGATGACGATGGCCAACTTCTGAGAGAGGAGA TTGATTCCCTGCACATAAGGCCTCCTCCTCCGCCAGAAAATGGTGTTGTTGCTCAATTTAGTCGTCTTGACGAAGTTGAT GCTCTGCACAATGACGGCTGGTGGGTCGGTGTGATTTCTAAGGTTCTTGGTGACTCCAAGTATATAGTTTACTTCAGGGG CACCAATGAAGAATTGGAGTTTCAGCAATCCGAGTTGAGGGTGCATCAGGACTTCATTGGTGGCAAATGGGTTATGGCTA AGGTATATGACTGCATTGGTTTTTAGTTTTCGAGTAAGCACATTTGAACTTCCCCTTAATAACTAGTCTTTATTTACATA GCAACATATATAGTCAAAATAGTCCCCTAATTGGGATTGGCTTCAAGCATTCAATCCTCTTCTTGTAATCTACTATTTAG TTTAAATTTTTGTTACTGAACCCCAGCTATCAAGGCAGTTCAAACAACGATTTCTGAAACGAGTTACATTTTTCTTCAAA GAATTGAATTTGAGTCTTGACAGTTTGTGAATCTCTAACCTTCAATTCTTGTCCTGTCTGTTTTGTTGACTTGATTGTGA GTGACTGTACGGCGTGGCTGTGCGTGGAAAATTGACCCTAACGCTCAAGTCTTTCTTTGAGAGAGTTTGAGTGATCTTAA AGGAAGTGAAGGGGAAAAACTTGAAACTAACTTAGCTTAGTAGGATCATGGGAGAGTGGAGGTGCCTCATTATATATTTG GGAAATCATGCTCTGATCATCCATATTTGATTGGTTGAAGTAGGAGTTCACCGCTTCTCACAATTGAGATCAATGTTTTG CTTCAGTGAACTAGATTAGAGGCTTGACAGTCCGTACTTCGTTAGCCTTCAAAACCTCAATTCCTCCATTATATGGTATG ATTACTTTATATTTAGGAGTGCATAAATGTGGATTTGCAAAAGAGGCTCTCTCACTTAAGTCATTCTTTAAGGAAGTGTT AGCAATCTTAATAGAAGTGAAAAAAAAATGACTGGAGTGCACTTACATAGACATGCATGGAGAGAAATGTGGTTGGTATA ATTGTTGAACTTAGTGGGAATGTGGGATCATGGAGAGTGTCTTAGAATTCGAGTTAGGTCTAACTTTAGGCTAAAAGCTA GCTTAGAAGTGATGGTTGAGCTACCATTTATAAAGACTTATTTGGCCAAGAAAGTGATAAGTATAGACCCTTAGTCAAGA AGGTCTATGTTAGGAGAAAGAGGGGAGGAGCAGGGGATAATAACCCTGTAACTGACTCTAACTGACTTCATGGGGGGTTA GGATTCTGTTAGTCTGTTAGTCCCTTGTAACTGACAACTACCTACTATAAAGGGTAGTTAGCAGGGTAGTTAGAATCACT TCTGAGTTGTTAGGAAGAGTGGAGAGTCTGGTCTCTCGAATAACCAGTGGGTTCTTCTGTAGTTTGTGAGTTTCTTCTGA ATCTTCTTGGATTCAGTGTGAGTTTCAATACAATTCTTCTCAGTTTTCTTCAGAGTTTATCAGAAAGTCAGTGTGAAAGG ATAGAGATTGAAGAAATTTGGAGGTACAAAAGAAAGTGAGTGTGAACGAATTGTAATTGAATAAATACTTCGGTGCCATA TTCACCCTCATTCTCATTGTGAATTGAGATCATGGGGTCAGGGGAGTTCACTTAAAGTACAGGGTAAACCATAGAAGAAA CAAGTCGAGTGAAAGCATAAACTTGTGCAGACTGGAAAATATCAGTCTAGCGAGCCATGCTTTCTATTTGAAAGTCACAA TTGAAACTAATAAGTATGTCAAAATAGAAGTTTAGATTGGGATGCTTGTGGGTGTGGTATCAACGGTAGTGTTATGTAAT GTTTAAGTAACATCAATCAAATTATAACATGCTTAATTGCACTTTCAGCTTTTCTTGATTTTGATTCCCAACTTCTTTGT ACCATAAAAATTGCATTAATTTCAAACTAAATGGATCCAAAGTTTAATTAAGTCATTACAATATTGCACACTAGTAGTTG TTTGGCATTTGTTCATGTTGTTATTGGCAACTTATTAACATTGTTGATCAGTATTTGATGTTGACTTGATGGACAAGGCT CTTAAAAAATATTGTGTTGTGATTTTAATTCATTAATATTTAAAAACAAATAAACTTTTACTTGCTTGTTTTATATTAAC TCGTCACACAAGATTCTCTTCCTTTATATGTGAGAGTATATTGTAAAGACAGCTTCTAGTCTATTAAGTGCAGTACTGAG CCGGTTACAAGTTTTAACTGATTCAGTTATTGACTCAGCTAGATAACTTAGATTCACTGGGGTATAAACCTTGTATCTCT ACAGTTTCTCACGTAATGGAAATTACACATTTCACTCCGTCTTCTGTTTTCTCTTTCCTTCTCTTTCTCTAACTCTATCA ATATGACATTCTCTTTAAACCTTGTAATCTCGACTCTTAAGCATGCAAAAATATTTTGTTTTGAAGATAGTAATCTGGAA ATCATTATTGGTTTCAGGTTGTTCAGGCGCGTTGAAGTTGCGAACGCCAAAGATAGCAAGAGAAAGAAGAAGAAACTCTG TTTTGGTCTAGCTAGTTGCCACGGTTGTGAATAATTGCAAAGAGAATAGAACTCCTGTATAGTTTAAAACTTGAACTCAT CTTTGCTATGCTAATGGTCATTGTAGGTTGCAGATCAAGTATAGCTTAGCATTTTTAAGGCTGGACCTTGATTTTAGTTT CATTACATCATGCTATGGAATTGCAACTTGTGCTTTTAGCTATGCGAGTAGTATTTCATTTTGTTTGGTTTTTTACTGGA AATCCCCACATACGGAAGTGTGTGTTTAACCCTCAAACCGATGATGATGGAGATAAAGCCCTCCTTGGAATAGTGACTTC GAATTCAGGTCCTTGACATTGCAGGTACAGTTTACGTGAGTTTTTCCCATTTGCCAATGTGACTTTGAATGAGAAAGCAA GGGCTTTTGTACCCAAATGGTATATTTATTTTGGAAATTACAGCTTTTGGGTATTTTTTTTTATTTACCAAATTAGTATA AATCGTCACTGTCAGTGGCGATTCTATTTTTTTTTTTTTTACTTTTTTAAAGAATCG
CDS sequence (LotjaGi5g1v0231900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCCAAATCTGCCACCGCCGTCTCGCCCTTCCTGAAACCCGGTACCGCGGTGGAAGTCTGTTCCGAAGACGACGG TTTCCGCGGCTCCTGGTTCACCGGCAAGATCGTCCGCCGTCTCGCCAATAACAAGGTCTCGGTGGAGTATGATAGCCTGA CTGAGGACGACGAAGGCACCAAGCCCTTGAAAGAAACCCTGCACATTCGCCAGCTCCGGCCACTCCCCTTGCCGGAGACT CAACATGAGTTCAAATTCGGCGACGAGGTGGACGCTTACCACAACGACGGGTGGTGGGAGGGTCATATAACTGAGGAATT AGGGAATGGTAGGTTCGCTGTGTATTTCAGAGTCTCCAAGGAGCGGATCGAGTTTCCGAAAGAGGAGCTGAGGACTCACC GTGAATGGATTGATGACCATTGGGATCCGCCGTTCGAATTGCCGAAGCAGGAGGAGCAGGTGAATGAATCGAACAAGGTG TTGTTGACACCGAATGCGAAGTCTGAGGAAGCTGTGAACAAGGTGTTGTTGACACCAAATGTGGAGTCTGAGGAAGCTGT GAAGCTGAAGAAGAAGGAGGAGTTGTTTTGCGTGGGGGCGTTGGTTGAGGTTAGCAGTGACGAAGAGGGTTTCCAAGGGG CTTGGTTTTCTGCCACCATTGTCGAGGTTATGGAACAGGAGAAGTTCCTGGTTGAGTACCATAACCTGACTGATGACGAT GGCCAACTTCTGAGAGAGGAGATTGATTCCCTGCACATAAGGCCTCCTCCTCCGCCAGAAAATGGTGTTGTTGCTCAATT TAGTCGTCTTGACGAAGTTGATGCTCTGCACAATGACGGCTGGTGGGTCGGTGTGATTTCTAAGGTTCTTGGTGACTCCA AGTATATAGTTTACTTCAGGGGCACCAATGAAGAATTGGAGTTTCAGCAATCCGAGTTGAGGGTGCATCAGGACTTCATT GGTGGCAAATGGGTTATGGCTAAGGTTGTTCAGGCGCGTTGA
Protein sequence (LotjaGi5g1v0231900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKSATAVSPFLKPGTAVEVCSEDDGFRGSWFTGKIVRRLANNKVSVEYDSLTEDDEGTKPLKETLHIRQLRPLPLPET QHEFKFGDEVDAYHNDGWWEGHITEELGNGRFAVYFRVSKERIEFPKEELRTHREWIDDHWDPPFELPKQEEQVNESNKV LLTPNAKSEEAVNKVLLTPNVESEEAVKLKKKEELFCVGALVEVSSDEEGFQGAWFSATIVEVMEQEKFLVEYHNLTDDD GQLLREEIDSLHIRPPPPPENGVVAQFSRLDEVDALHNDGWWVGVISKVLGDSKYIVYFRGTNEELEFQQSELRVHQDFI GGKWVMAKVVQAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 11 | 80 | 70 | 6.4E-17 | ||
PANTHER | 12 | 173 | 162 | 1.2E-93 | – | |
PANTHER | 12 | 173 | 162 | 1.2E-93 | – | |
Pfam | 16 | 76 | 61 | 9.9E-20 | ||
SMART | 82 | 138 | 57 | 1.2E-14 | ||
PANTHER | 193 | 329 | 137 | 1.2E-93 | – | |
PANTHER | 193 | 329 | 137 | 1.2E-93 | – | |
SMART | 194 | 261 | 68 | 3.2E-14 | ||
Pfam | 199 | 258 | 60 | 3.1E-19 | ||
SMART | 265 | 321 | 57 | 1.7E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0231900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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