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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0242600 |
| Transcript ID | LotjaGi5g1v0242600.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|G7ICV1|G7ICV1_MEDTR Pre-mRNA splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi5g1v0242600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55116979..55122471) extracted from Lotus japonicus Gifu genome v1.2.
GACATTCTCGAGAAACGGAAAACCCTCCCCGTCTGGCTCCAGAAGGAAGAGTTCTTCAAGGCTTTGCGCGAAAACCAGAC TCTCATTCTCGTTGGTGAAACTGGTAGTGGTAAAACCACACAGGTCAGTTTCTCTACTCCAAAACCCTCTCTCAAAATTG AAATTGTAGGGACTCGATGAATTCTACTTGTTTTTGTGTGTAGGTCACTGAATTTTATGGTTTTGTGTTTTTGTTATTGG TGACAGATTCCTCAGTTTGTTCTGGAAGCGGTTGATTTAGAGAGCCCTGATAGACGCGGGAAGATGATGGTTGCATGCAC TCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCACTATTGGAGAAGAGGTTG GTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATGTTTTGTTTTTCTGTTAAATTACTACT TTCTTTAGTTAATTGAATTTAGAGTTTCGTGCAGTATTTTGGCCCCGTTTGGAAGAGCTTATTTGAACTTATCTGATAGC TTAAGCTCTTATGTAAGTGTATGGCAGAGCTTATGCAAACAGGCGCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTAC TCAAGATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAAAATTTTAAAATAGCT TATGAATAAGCACTTATGACCATAAGTGCTTAATTAAGCTGTTTTCCCAAACGGGGCCTTTATATAATGTTTTCCCCCCC TATGGGTCTCAATTGGGATGCGTTTTCTTTGCTCCCTGCCACAGGTATCTTACAGATGGTATGCTTTTGAGAGAAGCAAT GGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGGACTTTGGCCACGGATGTGCTGT TTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAGTGCAACACTTGAAGCTGAAAAG TTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGGTGGAAATTTTCTACACTCAGGA GCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGTGAGCCTCCTGGAGATATACTTG TTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGTTTCAAATTTGGGAGACCAGGTG GGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGATTTTTGAAGCAGCTCCACCTCC AGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAAACTTCCTTGACAATTGATGGTA TAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCGGGTCGAGTCTTTGTTGGTGTCT CCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAGGGAAATGTTTTAGACTTTACAC TGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCTAATCTTGCGAACACAGTTCTTA CCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCCCCCGAGACCTTAATGCGCGCT TTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCC ATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAATGAGATTCTTTCAATTTCAGCCA TGCTATCAGGTATGATTCTATTTTTAATTGCTTTTTTTGTGTCTGTCCTGAGTCTCACCCTAATGTTAAGGGAATGTTGT TGTGTTGGGCTCCACTTTGATATGGATGCCCAGCATTTTTACATGTGCACAGTCTATATTGTGCATACGAGGGGATGTTT GACTGCTTACATGTGTGCTAAGTTGCACATGAATGCGGTTCATTGAGTATGTCCTGTTAGTTAGTCATCAGCAACTGTCT TCTCTGGGTTTCATGCCCCCGGTTGGCATGTACCATAGGATTCTAAGTAAGTGCTGATGCAGATAGTTGCAGTTTCTCAG TATTCTCTCATGAAGAAATTGGTGTCGTCTCGCCTCTATGCATCTGCTGACCTTCCGTGGACCTCCTCTGTGATAAATAA TTTCTTTCTCTAGTACCCAATTGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGTTTGG GCACATTGATGGAGATCATCTCACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAGTGAGTGCTCATTTCTGCTAC TTTGTTTATTCCCCAATTTGTTGCTATTTATTTTTGTCTAATGTCAAGTTCGTTAATTGTACGTGAATGGTTTTTCAGAT GAGGATCCATCTTGGTGCTATGATAACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGT GCGTATCATGACTCGGTATAACCTGAAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGG CAATGCTAGCAGGATATTTCATGCAGGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTT TGTTGAGATGCACTGCAATTTGTGCTTATCTTCCTTCCTTTTCCATTTTGTACTACAAAAATAGCTATTGTGTAGGCTGA AGGATTGCATTTATATTAATTATTATATTCTGGTGTAGGTGGTGCACTTGCATCCTTCAAATTGCCTGGACCACAAGCCC GAGTGGGTAATCTATAATGAATATGTCCTTACCAGTCGGAACTTCATTCGTACTGTGACAGACATACGCGGTGAATGGTA AGATTTTATTCATTTAGTATTTTGATGGCTTTCCAAGCAAGGTTTGAGTTTGACAACTTGAGCTGGTAAAAAGTAAATAT TTTTCATCCATGATATTTGATGGGAAACTTGTATTCAGTAAAAGTGCTATCAGTAAATATATAGTTTTCTGGCATAAATT TTGATGCAGGAGCAAATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATTCCGAATCTATTCT GTTTTTAATTAAGTTTAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTTAGGATCTTTTAGT TAGGATTTTCATTATTTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCAATAGCCTATTCAG TTTATTATTGATAATCAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTAGGGTTCAGTGCTT GCTAACCCTTACTTTCTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGTACGACTTCCGCTG CATCAAGTGGCATCAGAGCAGGCTTTCTCCTGTCTCTTTTCTTTGCTTGATCAACCATGGAAGATCAACCAATGACCAAA GCAGATCTGAAGGATGTTACCGCGGCTCTTACCGCGGCCCTAACTGCTATTACGCAACATATGACACAACAAATGATACA ACATATGGCGACGTTCACGGCGGCTTTAACGGCGCAGATCAACAATACCAACAACGGTAACCGGCGACGAGACAGGAGAG GGAAACCACATAGGTTTCCGCGCGACAACAACAACAATCGTTCCGCTATATCTTTACCTTCCCAATCTTTGCATTCACCA TCCGTATCTCATTCTTATTACCAAGTTCAGTACCCAACCTCTAAAACCACCGAAACTCCACACCCCCAACCTGCTACATC CAACCTTATCAATCCTTACCCCAACATATCACCGACTGCAAATCCAATTTCCTTGCCACAACCCTTACCAAAACCTATTT CAAATTCATGTCCATCTGCAAGACCTATGTACGCAACTTCTTCGGAATCAGATTCTCAAATTTCATTTGCGCCATCCTCT ATTGTTGACATGGAAGATGAGGCAAAAATGTTGGTGGATGATTTGGTACCATCTGCGCAGAAACCAAGGGAAGTAGACGT TACAAAAGATGAAAACTTTGGCCACATGAAGTCCTCAGAGTTTCTTACATTCAAATCTTCAACTCCGCTTCCTACAGGAG TACAAAGCATTATCCCCTATAATTCAAAAGCCCCCAATGTTATTTTGGAGAAACTGGAGAGGTTAGAATTGCTTAAAGAT AGTGATGGTGCTCATGAGATATTTGTTGAAGGAGATGATGAAAAAATAGTTCGAAGTTGTAGTAATGGTGTTGTTCGTTT GGTTGGTTTGCATATTGAAGCCTTTTATTTAGAAGAGAACTTGTGGTCAAGTTCTTTGGAAGAAGAGGAGAATGTAAAGA CATCAGAGGCACTTGGTTGTGACGCATTCATGCGGACATCAGATAGTTCTACACAAATTTGGGTATTTGACCCTGGCATT CTTAATGTCGTTCATGAGTTCCGAACAGAGGCCTCCTTTGTTTTTTTTTGTTACGTTAGAACTCGGGGTCGAGTTCTTCA CAAGAAGAGGAGCCTGATGCAGGAGCAAATTAATTATGAATTTATTATTTTTAGTATTTTTAAATATATTTAGGATCATT CCGAATCTATTCTGTTTTTAATTAAGTTTAGGATCAATTTGTTAGGATTTGTTATTTTTAATTACTTTCTAATTGAGTTT AGGATCTTTTAGTTAGGATTTTCATTATTTTTAGTTTCATTAGGGTTTTCCTATTTCTCTATTTAAGCACGTGTAAGGCA ATAGCCTATTCAGTTTATTATTGATAATCAAATTTGAGATTTTTCTCTCTTTACTGGTGGATTCCAGAGTTATCTTTTTA GGGTTCAGTGCTTGCTAACCCTTACTTTCTGGTGGATTCCAGAAACCTTTTCTTTTAGGATTTGCGCTTGCAATCCTAGT ACGACTTCCGCTGCATCAAATTTACTAAAACATATTGTATATTCCTATCATGAATTAATAACACTTGAATAGATGATTTA TGTACAGTGGTAAACACAACTTATTATTTTGAATTCCACTCTTTGATTTTAGCTGGGAGAGAGTTGCAAGAATGATTCTC AAGTATAATGTTGTGGACCTTTCTGTACTAATTTTGGCTGATGTTATTTAGATGTATTAACTTTATGATGTATTATTATC CTGCAGGATAGTTGATATAGCACCACATTACTATGATCTGTCTAATTTTCCACAATGTGAAGCAAGGCGTGTTCTTGAGA AGCTTTACAAGAAGCGAGAGAAGGAAAAAGAGGAATCTAGGGGTCGTAAATGA
CDS sequence (LotjaGi5g1v0242600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTTGCATGCACTCAGCCGCGTAGAGTGGCTGCGATGTCTGTTTCCCGCCGTGTGGCTGAAGAGATGGATGTCAC TATTGGAGAAGAGGTTGGTTATAGCATCAGATTTGAGGATTGCAGTAGTTCCAAGACGGTTTTGAAGTATCTTACAGATG GTATGCTTTTGAGAGAAGCAATGGCGGATCCGCTTTTGGACCGATACAAAGTAATTATTCTTGACGAGGCGCATGAAAGG ACTTTGGCCACGGATGTGCTGTTTGGTCTTCTTAAGGAAGTACTTAAAAATAGACGTGACCTGAAGTTGGTTGTTATGAG TGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTCCGGGGCGCCTCTTATGAAAGTGCCTGGAAGGCTACATCCGG TGGAAATTTTCTACACTCAGGAGCCAGAAAGAGATTACTTGGAGGCGGCTATTAGGACAGTTGTACAGATACACTTGTGT GAGCCTCCTGGAGATATACTTGTTTTCCTTACTGGGGAGGAAGAGATAGAAGATGCATGCCGCAAAATAAATAAAGAAGT TTCAAATTTGGGAGACCAGGTGGGACCTTTGAAAGTGGTACCCTTGTACTCTACACTTCCTCCAGCTATGCAGCAGAAGA TTTTTGAAGCAGCTCCACCTCCAGTTAAAGAGGGAGGGCCTCCTGGAAGGAAGATTGTGGTATCAACTAACATTGCAGAA ACTTCCTTGACAATTGATGGTATAGTCTATGTTATTGACCCTGGGTTTGCTAAGCAGAAGGTTTATAACCCTCGAGTTCG GGTCGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGGCGTGCTGGAAGAACTCAGCCAG GGAAATGTTTTAGACTTTACACTGAAAGAAGTTTCAATAATGATCTTCAGCCGCAAACCTATCCTGAAATTTTGAGATCT AATCTTGCGAACACAGTTCTTACCTTAAAGAAACTTGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGC CCCCGAGACCTTAATGCGCGCTTTGGAAGTATTGAATTACTTGGGTGCACTTGATGATGAGGGTAACTTAACAAAGCTGG GTGAGATTATGAGTGAATTTCCATTGGATCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCTGAGTTCAACTGTTCAAAT GAGATTCTTTCAATTTCAGCCATGCTATCAGTTAGTCATCAGCAACTGTCTTCTCTGGGTTTCATGCCCCCGGTTGGCAT GTACCATAGGATTCTAATACCCAATTGCTTTATTCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCAAAAGCTAGGT TTGGGCACATTGATGGAGATCATCTCACACTCTTGAATGTTTACCATGCCTACAAGCAAAACAATGAGGATCCATCTTGG TGCTATGATAACTTTGTTAACAATAGGGCGCTGAAATCAGCTGATAATGTCAGACAACAGCTAGTGCGTATCATGACTCG GTATAACCTGAAGCTATGCAGCAGTGACTTCAATAGCCGTGACTACTATGTCAACATAAGAAAGGCAATGCTAGCAGGAT ATTTCATGCAGGTGGCCCATCTTGAGCGGACAGGACACTACTTGACAGTGAAAGACAACCAGGTGGTGCACTTGCATCCT TCAAATTGCCTGGACCACAAGCCCGAGTGGGTAATCTATAATGAATATGTCCTTACCAGTCGGAACTTCATTCGTACTGT GACAGACATACGCGGTGAATGGATAGTTGATATAGCACCACATTACTATGATCTGTCTAATTTTCCACAATGTGAAGCAA GGCGTGTTCTTGAGAAGCTTTACAAGAAGCGAGAGAAGGAAAAAGAGGAATCTAGGGGTCGTAAATGA
Protein sequence (LotjaGi5g1v0242600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMADPLLDRYKVIILDEAHER TLATDVLFGLLKEVLKNRRDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLC EPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVGPLKVVPLYSTLPPAMQQKIFEAAPPPVKEGGPPGRKIVVSTNIAE TSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRS NLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSN EILSISAMLSVSHQQLSSLGFMPPVGMYHRILIPNCFIRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSW CYDNFVNNRALKSADNVRQQLVRIMTRYNLKLCSSDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHP SNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWIVDIAPHYYDLSNFPQCEARRVLEKLYKKREKEKEESRGRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 137 | 137 | 0.0082 | ||
| ProSiteProfiles | 1 | 128 | 128 | 16.325 | ||
| Gene3D | 1 | 130 | 130 | 3.3E-62 | – | |
| CDD | 2 | 127 | 126 | 1.76382E-89 | – | |
| PANTHER | 2 | 412 | 411 | 0.0 | – | |
| PANTHER | 2 | 412 | 411 | 0.0 | – | |
| SUPERFAMILY | 5 | 524 | 520 | 1.49E-114 | ||
| Gene3D | 131 | 312 | 182 | 4.0E-73 | – | |
| CDD | 132 | 300 | 169 | 2.93244E-86 | – | |
| ProSiteProfiles | 153 | 333 | 181 | 16.395 | ||
| Pfam | 155 | 291 | 137 | 7.0E-11 | ||
| SMART | 174 | 292 | 119 | 1.5E-17 | ||
| Gene3D | 336 | 467 | 132 | 1.7E-32 | – | |
| SMART | 353 | 465 | 113 | 2.0E-31 | ||
| Pfam | 354 | 464 | 111 | 1.6E-21 | ||
| PANTHER | 433 | 635 | 203 | 0.0 | – | |
| PANTHER | 433 | 635 | 203 | 0.0 | – | |
| Pfam | 526 | 602 | 77 | 4.4E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. |
Expression pattern of LotjaGi5g1v0242600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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