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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011709
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 83 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.437s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0111099.1
n.a. Os02g0301500 [Oryza sativa Japonica Group] gi|115445687|ref|NP_001046623.1| chr0 48220222 48221842 +
2 domain predictions
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Lj0g3v0195829.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX29-like isoform X1 [Cicer arietinum] gi|502126630|ref|XP_004499378.1| chr0 95538193 95543632 -
2 domain predictions
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Lj0g3v0195839.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX29-like isoform X1 [Cicer arietinum] gi|502126630|ref|XP_004499378.1| chr0 95538874 95543632 -
2 domain predictions
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Lj0g3v0205039.1
n.a. PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] gi|356499332|ref|XP_003518495.1| chr0 101929939 101932645 -
2 domain predictions
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Lj0g3v0205279.1
n.a. PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max] gi|356547300|ref|XP_003542053.1| chr0 102098668 102102131 -
2 domain predictions
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Lj0g3v0205299.1
n.a. PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Glycine max] gi|356557396|ref|XP_003547002.1| chr0 102098668 102102129 -
2 domain predictions
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Lj0g3v0238469.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 123745271 123748239 +
2 domain predictions
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Lj0g3v0250239.1
n.a. PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Fragaria vesca subsp]. vesca] gi|470142342|ref|XP_004306870.1| chr0 129717504 129724134 -
2 domain predictions
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Lj0g3v0271549.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr0 140673021 140679894 -
2 domain predictions
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Lj0g3v0326409.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356533151|ref|XP_003535131.1| chr0 170633599 170648023 -
2 domain predictions
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Lj1g3v2610280.1
n.a. RNA helicase family protein isoform 3 [Theobroma cacao] gi|508774753|gb|EOY22009.1| chr1 30135419 30137988 -
2 domain predictions
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Lj1g3v3317320.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX8 [Glycine max] gi|356502628|ref|XP_003520120.1| chr1 37090007 37096648 +
2 domain predictions
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Lj1g3v4434360.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX8-like isoform X1 [Cicer arietinum] gi|502109572|ref|XP_004493676.1| chr1 51769731 51774182 -
2 domain predictions
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Lj1g3v4434360.2
n.a. PREDICTED: ATP-dependent RNA helicase DHX8-like isoform X1 [Cicer arietinum] gi|502109572|ref|XP_004493676.1| chr1 51769731 51772636 -
2 domain predictions
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Lj1g3v4435510.1
n.a. PREDICTED: ATP-dependent RNA helicase DHX8 [Glycine max] gi|356502628|ref|XP_003520120.1| chr1 51815657 51821416 -
2 domain predictions
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Lj1g3v4834030.1
n.a. ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357442187|ref|XP_003591371.1| chr1 58591542 58595872 -
2 domain predictions
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Lj1g3v4834030.2
n.a. ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357442187|ref|XP_003591371.1| chr1 58591542 58593182 -
2 domain predictions
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Lj2g3v3072950.1
n.a. PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine max] gi|356499332|ref|XP_003518495.1| chr2 39543183 39552511 +
2 domain predictions
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Lj4g3v2538150.1
n.a. PREDICTED: ATP-dependent RNA helicase dhx8-like [Glycine max] gi|356512355|ref|XP_003524885.1| chr4 34125113 34134334 -
2 domain predictions
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Lj4g3v3114070.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1| chr4 41880596 41891192 +
2 domain predictions
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Lj4g3v3114070.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1| chr4 41880623 41891192 +
2 domain predictions
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Lj5g3v0840940.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356534552|ref|XP_003535817.1| chr5 11967497 11976702 -
2 domain predictions
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Lj5g3v0840940.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like isoform X1 [Cicer arietinum] gi|502122238|ref|XP_004497647.1| chr5 11981978 11991306 -
2 domain predictions
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Lj5g3v1575200.2
n.a. ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357442187|ref|XP_003591371.1| chr5 22874340 22879898 -
2 domain predictions
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Lj5g3v2169560.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum] gi|502120600|ref|XP_004497017.1| chr5 31162361 31172109 +
2 domain predictions
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Lj5g3v2266340.1
n.a. Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1| chr5 33156139 33159890 +
2 domain predictions
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Lj6g3v1055630.1
n.a. RNA helicase family protein isoform 1 [Theobroma cacao] gi|508774751|gb|EOY22007.1| chr6 12134532 12150086 -
2 domain predictions
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Lj6g3v2006110.1
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Cicer arietinum] gi|502078184|ref|XP_004485864.1| chr6 23370198 23375763 -
2 domain predictions
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Lj6g3v2006110.2
n.a. PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Cicer arietinum] gi|502078184|ref|XP_004485864.1| chr6 23370198 23378924 -
2 domain predictions
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LotjaGi1g1v0046400.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT2G30800.1 helicase in vascular tissue and tapetum; Swiss-Prot: sp|F4INY4|HVT1_ARATH DExH-box ATP-dependent RNA helicase DExH6; TrEMBL-Plants: tr|K7KB99|K7KB99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0046400 LjG1.1_chr1 6332736 6341824 -
2 domain predictions
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LotjaGi1g1v0718000.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT1G26370.1 RNA helicase family protein; Swiss-Prot: sp|F4IE66|PRP22_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10; TrEMBL-Plants: tr|K7K7U5|K7K7U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718000 LjG1.1_chr1 128633815 128640695 +
2 domain predictions
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LotjaGi1g1v0718000.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT1G26370.1 RNA helicase family protein; Swiss-Prot: sp|F4IE66|PRP22_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10; TrEMBL-Plants: tr|K7K7U5|K7K7U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718000 LjG1.1_chr1 128634378 128640066 +
2 domain predictions
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LotjaGi1g1v0718000.3
n.a. ATP-dependent RNA helicase, putative; TAIR: AT1G26370.1 RNA helicase family protein; Swiss-Prot: sp|F4IE66|PRP22_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10; TrEMBL-Plants: tr|K7K7U5|K7K7U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0718000 LjG1.1_chr1 128635053 128640066 +
2 domain predictions
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LotjaGi1g1v0757600.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT3G62310.1 RNA helicase family protein; Swiss-Prot: sp|Q9LZQ9|DEAH2_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2; TrEMBL-Plants: tr|G7ICV1|G7ICV1_MEDTR Pre-mRNA splicing factor ATP-dependent RNA helicase; Found in the gene: LotjaGi1g1v0757600 LjG1.1_chr1 133077212 133081998 -
2 domain predictions
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LotjaGi2g1v0125300.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT1G33390.1 RNA helicase family protein; Swiss-Prot: sp|Q9C813|DEAHD_ARATH ATP-dependent RNA helicase DEAH13; TrEMBL-Plants: tr|I1J7X3|I1J7X3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0125300 LjG1.1_chr2 45988316 45994720 +
2 domain predictions
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LotjaGi2g1v0196000.1
n.a. ATP-dependent RNA helicase; TAIR: AT1G58060.1 RNA helicase family protein; Swiss-Prot: sp|F4I9Q5|DEXH7_ARATH DExH-box ATP-dependent RNA helicase DExH7, chloroplastic; TrEMBL-Plants: tr|A0A0R0F600|A0A0R0F600_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0196000 LjG1.1_chr2 63008976 63014916 -
2 domain predictions
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LotjaGi2g1v0207400.1
n.a. ATP-dependent RNA helicase; TAIR: AT1G58060.1 RNA helicase family protein; Swiss-Prot: sp|F4I9Q5|DEXH7_ARATH DExH-box ATP-dependent RNA helicase DExH7, chloroplastic; TrEMBL-Plants: tr|A0A1J7G4L6|A0A1J7G4L6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0207400 LjG1.1_chr2 65152466 65158111 +
2 domain predictions
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LotjaGi2g1v0273300.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT2G01130.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|F4IM84|DEXH5_ARATH DExH-box ATP-dependent RNA helicase DExH5, mitochondrial; TrEMBL-Plants: tr|K7LD94|K7LD94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273300 LjG1.1_chr2 74450485 74465139 +
2 domain predictions
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LotjaGi2g1v0273300.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT2G01130.2 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|F4IM84|DEXH5_ARATH DExH-box ATP-dependent RNA helicase DExH5, mitochondrial; TrEMBL-Plants: tr|K7LD94|K7LD94_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0273300 LjG1.1_chr2 74451189 74465139 +
2 domain predictions
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LotjaGi3g1v0291100.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A0S3SG57|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100 LjG1.1_chr3 59328622 59338518 +
2 domain predictions
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LotjaGi3g1v0291100.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A0S3SG57|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100 LjG1.1_chr3 59329094 59338066 +
2 domain predictions
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LotjaGi3g1v0291100.3
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A0S3SG57|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100 LjG1.1_chr3 59329107 59338066 +
2 domain predictions
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LotjaGi3g1v0291100.4
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A0S3SG57|A0A0S3SG57_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0291100 LjG1.1_chr3 59331696 59338066 +
2 domain predictions
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LotjaGi3g1v0291100.5
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G13010.1 RNA helicase family protein; Swiss-Prot: sp|F4K2E9|PRP16_ARATH Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7; TrEMBL-Plants: tr|A0A151SUL8|A0A151SUL8_CAJCA Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16; Found in the gene: LotjaGi3g1v0291100 LjG1.1_chr3 59332170 59338066 +
2 domain predictions
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LotjaGi3g1v0302600.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G04895.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|F4HYJ7|DEXH3_ARATH DExH-box ATP-dependent RNA helicase DExH3; TrEMBL-Plants: tr|A0A0B2S1Y1|A0A0B2S1Y1_GLYSO Putative ATP-dependent RNA helicase DHX36; Found in the gene: LotjaGi3g1v0302600 LjG1.1_chr3 63170221 63185628 +
2 domain predictions
 –
LotjaGi3g1v0302600.2
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G04895.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|F4HYJ7|DEXH3_ARATH DExH-box ATP-dependent RNA helicase DExH3; TrEMBL-Plants: tr|I1KVZ2|I1KVZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0302600 LjG1.1_chr3 63170440 63185472 +
2 domain predictions
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LotjaGi3g1v0302600.4
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G04895.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|F4HYJ7|DEXH3_ARATH DExH-box ATP-dependent RNA helicase DExH3; TrEMBL-Plants: tr|I1KVZ2|I1KVZ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0302600 LjG1.1_chr3 63171234 63185039 +
2 domain predictions
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LotjaGi3g1v0302600.5
n.a. ATP-dependent RNA helicase, putative; TAIR: AT5G04895.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|F4HYJ7|DEXH3_ARATH DExH-box ATP-dependent RNA helicase DExH3; TrEMBL-Plants: tr|A0A0B2S1Y1|A0A0B2S1Y1_GLYSO Putative ATP-dependent RNA helicase DHX36; Found in the gene: LotjaGi3g1v0302600 LjG1.1_chr3 63171738 63185628 +
2 domain predictions
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LotjaGi4g1v0317100.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT1G33390.1 RNA helicase family protein; Swiss-Prot: sp|Q9C813|DEAHD_ARATH ATP-dependent RNA helicase DEAH13; TrEMBL-Plants: tr|I1J7X3|I1J7X3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0317100 LjG1.1_chr4 69470824 69477617 +
2 domain predictions
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LotjaGi4g1v0363900.1
n.a. ATP-dependent RNA helicase, putative; TAIR: AT1G27900.1 RNA helicase family protein; Swiss-Prot: sp|Q93Y16|DEAH4_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4; TrEMBL-Plants: tr|K7KQA5|K7KQA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0363900 LjG1.1_chr4 74387712 74406277 -
2 domain predictions
 –