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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0246600 |
| Transcript ID | LotjaGi5g1v0246600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 13; TAIR: AT1G02680.1 TBP-associated factor 13; Swiss-Prot: sp|Q6NQH4|TAF13_ARATH Transcription initiation factor TFIID subunit 13; TrEMBL-Plants: tr|I3T0K3|I3T0K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0246600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55510033..55512122) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTAATTCTACTGCTGGAACCTCATCAAAACCAAGAGCAGCATCCTCACAACCATCAGAAACTTCATCCAAGCGAAA GAGAGGAGTTTTCCAAAAAGAATGTAACAAATTTTATTCCTAACTTTTAATATCTTAGTCTACATGTACCTATCTTTATT CCTAACTTTTAATATCTTAGTCTACATGTACCTATCTTTCTTCCTAATCTTCTTGCTTTGCTATAGTGCAGCACATGATG TATGGCTTTGGAGATGATCCTAATGTAAGTGTTTTTCCATCCTTTTCATTTTTCCCCATATGTACTCAATTTCTATTCAC AAGGTTATTAAATCATTTAACTACATGTCAATTTTTGTTTGTTTTTCATTTAAAATCTAAATATTTATGTCTATTTATTT GAACTTTTGTTCTTGTCCGCCACCTCAACCAGCCACTTCCTGAAAGTGTGGCACTTATGGAGGACATTGTCATAGAATAT GTTACAGAACTGGTAAGAGTTTTCCCAAGTTTGTTATTGTTCAACTCAGCCTGAGTTCCCTAGAGTGGTTGGCTTATGTC CTTATGCAATTTTTTTTTCTGCCAAGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGAT TTTCTCTATTTGATTCGCAAGGTACTCTTATGTTAATAAAATTTGCTAATAATTATTTTGAAGATTAAATATTGTTGGGG AACCTTGAATCCTTTATAGGTCTTTCAAATATTGCATTAAATCAAATTCTACATCCCTAACTTCATTATTCTTGATGGAA CTATGCATTTGAAGAAACTATCTTTCTCTCTAAACCCTTTTTAATTTGTACAGATCTTATTCTTATGTGTTAGAAAAGAA ACGCAAAATAGAGTAAATCAATTAACATGAATCCTGGACAAACTAATGCAAAGTTCTATAACACTTCTTTACACTGAGAA TACTCTTCTGAATTGACCATCTTTTATGTTAGTACTTATTTCCAAACTTTCTCAGCATTAGATTACACAACACCATTGTA AATTTCTATCTATCTAGCCAGAAAGTTCTCTTTGGTCTGCCTTTATCAACACATGGCCTTTAGTTGCTAATACGCCTTGT CTGATGGACTAAGGCCTATACTTGGGAACTTGTTACAACTAACAAGTATCAACCTCTATTTATCCATATCATTTTTTTAT GCGAGTCTTTTACTGTCTTGTGCATATCACACTTTTGGTCAAACTTGTTACAACTTACAAGTATCAACCTATATTTATCC ATATCATTTTTTTGTGCGAGTCTTTAACTGTCTTGTGCATATCGCACTTTTGGTCAAGCTTTAGATAGAGTGAACTTTGT GTCTTCGAGATTATTAAGTATTGTCTGACAAATCTTAGTGTAAGTACAATAGATTAATATGAGTTGCAACCTGCTGGCTG AGGTTAGTTTTGTTATTCCTCAACGAGAATTCCGATAGATAAGATTCCAGATATTTCGATACACTGAAATGAAGATCGCT TCACCATTTCTCATTGAGTTGAGCAAATGGACCTTGATATTGTTAGAAACTAGTGAGGACTGGTCCTATTACCTCTAGTT AAAATGACAAACAAAAAATACAGAGGACTGATTACTCAGACAACCTCTCAGAAGGCCATTTTCAGGAGGATGGAGTTAAA AAGAAAGTTTGAATTGTCGCAAAAACACCTGAAACTCTGCAACCATCAAAGAGATTCTGAGCAGACATGGATTGGGCTGT CATAGCATATACCTTCTTAATAAAGGAAACCGGAGATTGACACAAACTTTCAACATGAGGGAACATGAGAGAAATTTCAC ATGAGAGGATCCTAATCCAAAAAGAAATCACATGACCATCATAACTATTTGCATTCATTACTGTCTTATGTAAGTTATGT TATTTAACTTGGATCCTTAAACTTATGCATTGCAGGATTTTCCAAAACTTAACCGCTGTACAGAACTGCTGTCGATGAAT GAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGATGAAGAGAAACTGAGGAAGGTTTTTGAGGTTGATGAATCAGT TGAAGGATGA
CDS sequence (LotjaGi5g1v0246600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAATTCTACTGCTGGAACCTCATCAAAACCAAGAGCAGCATCCTCACAACCATCAGAAACTTCATCCAAGCGAAA GAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGGAGATGATCCTAATCCACTTCCTGAAAGTGTGG CACTTATGGAGGACATTGTCATAGAATATGTTACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAG CTATCAGTTGAGGATTTTCTCTATTTGATTCGCAAGGATTTTCCAAAACTTAACCGCTGTACAGAACTGCTGTCGATGAA TGAAGAGCTGAAACAAGCAAGAAAGGTTTTTGAATCAGATGAAGAGAAACTGAGGAAGGTTTTTGAGGTTGATGAATCAG TTGAAGGATGA
Protein sequence (LotjaGi5g1v0246600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSTAGTSSKPRAASSQPSETSSKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVIEYVTELVHKAQDIGSQRGK LSVEDFLYLIRKDFPKLNRCTELLSMNEELKQARKVFESDEEKLRKVFEVDESVEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 5 | 124 | 120 | 6.4E-51 | – | |
| PANTHER | 5 | 124 | 120 | 6.4E-51 | ||
| CDD | 28 | 118 | 91 | 6.51593E-43 | ||
| Pfam | 30 | 118 | 89 | 8.5E-31 | ||
| Gene3D | 30 | 74 | 45 | 6.5E-25 | ||
| SUPERFAMILY | 31 | 73 | 43 | 2.05E-13 | ||
| Coils | 103 | 127 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi5g1v0246600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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