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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0246600 |
Transcript ID | LotjaGi5g1v0246600.4 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi5g1v0246600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55514476..55517469) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTAAGACGGTGGATCTTCCTCCCAAGGGCGGCTTCAGTTTTGATCTCTGCAGAAGAAATGCAATGCTTGAACAGAA GGGCCTTAAGGGCCCATCCTTTCTGAAGACTGGGACGACTATTGTTGGTTTAGTTTTCCAAGTATGAATGGCTTATACTT CATCTTATGTGGTTATTTTGGGTTCACTATTTTTTTCTGTGTCTTCTTTATCATGGTGAGTTAATGACCAAAACACGTAG GCCTCATATTGAATAGTGGGTCCAACATACAGGACGTGAGCTCGTGTTTCACCACGCTCAATCTAGAATGACTTCAAATA TATAAGTGGTATATAATCGGTTGAATTGGGTTTTATTAGTGGCAGGGAAGATGTGCTTAGGACGTGTCTTGTGTTCAAAT TTTATGATGTTGGAGCAATATTTGGTTGCATTTTTTGGAGGGAGGGGAGTGATGAAATTGGGAAGCCTAGAATGACATGT TGTCTTGATTGTTATGTTCTTAGCCTAGCAACTTTTTGGACCCAACTAGTATAATTACAGTAGCACTATGCCTCCTCTCT CTCTCTCTCTCTCTTTCTCTAACAACCTCGCTTGTATCTTATGGTATTTGTTAAAATTTATTCTAAAATATATGAATGGT TGATTTTATTTTCTGGACGGCCTTTAGAAACAATTGGAAGCAAGTAAAGTTGTAAAACTCATGCATTGGTTTATGAAGAT GGCAATGGATAATTGGTTGCTCATGTAATTTCTTATCATATTGAGCTCAGTGGTGGATCTTTAGTTGTTCGGTTGAGTTT TTATCTTGCCTGCCTTGCTTCATCAAGCTGGGGAATAATATTAATCAATCTGGCTGTGGTTTTAATGTTGAAGTGGGGAT TTAATTGCACGTTTTGTATGGCTAATTTGAAATTGAGCTCCCTTGTCTAAAGATTGAGTTCTTATGAAGTGATCCGGTGC ACTCTAACTTTATAGCTTACAGTTAATGTGGTTATCCCCCTTTTTGTTGCTTTTAGTATTGCTGATCTTTTACGGAGCTG TTAGTCTCAGTTGGTTTTGTTAGTGGCAATTATCAGGTTGTTGATCATTGCACTTGGCTGCTACGATTTAGTTAGAAAGT TTTTCAGTGAAACTTACATGTCTATATATTCAAAATACTGCAATCAAACTCAACAATACAATACAAAGAAGTATTCACTG AAATACTGTTTCTCACTTTATTTCATCATCTTGAAAGCTGAACTACAGAATTTTTCCATTTTACATCTGTGCTCTTCATT ACTGTCCATGGCATGGTCACCCATACCAAATACGTTTTTATATAACTGCATGTTTTGATTGCATATTTTCTGTTTTTAAT GTCATAATTTGTAAACTATGATCAGGAACGGAACCAAGTGCAAAGAAAATGGGGCAGTCACCCCCCAAGAGAAAACTATT CCTTAATAGAATGGTTTTCAAATGATGTATTTGGCCCCCTCAAAATTTTTAGACTACCTATTCCAATAAGCTATTGTTGA TTTAGTGTGTTAAATTTTCGCCTCCTTGCCTGTTTTATTTTCTAGTTCTGTCCCTGACTGATCTAATTCTGACGTTTTCC ACGCAAAAAATTTGCCACAGGATGGTGTCATTCTAGGAGCAGATACTAGGGCAACTTCAGGATCCACAGTTGCTGATAAA AACTGTGAGAAAATTCATTATATGGCACCCAACATATATTGCTGTGGAGCAGGAACTGCTGCTGACACAGAGGCTGTAAC AGGTATATTTTGAAATGCATGCTATAACATTTTTACTTCATACCTTGTGCATAGTGGCATATAGGTGTTGTTTAAGTTTT GCTCTTGTAATATGGTAAAACCATTGAAAATGGGCTGTATTTACTGCAGACATGGTTAGCTCCCAACTCCAACTACATCG CTACCATACTGGTCGAGAATCGAGAATTGTTACAGCACTAACCCTTCTTAAGAGACACCTCTTCAAGTTGAGTTTTTAGA CCTTACATCTCTATTGAATTCGATCTCTGTATCAAACTCTGATTCTGGTCTGACTCTTAAAATTATTCTGCAGTTACCAA GGTCAGGTCTCGGCTGCCTTAGTTCTTGGTGGAGTTGATGCAACTGGCCCTCATTTGCATACTGTTAGTTCATTGCCTAA ACCTTTCTTTTGTACTTAACTTTCCTTGTTTTGAATGCATATAGTTTGATTTCTCATGACAATTCATGACATTTTGTGCA GATTTATCCACATGGTTCAACTGACACACTCCCATTTGCTACCATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTG AGTCTAAATACAAGGAAAGCTTGACTGTAAGTGACTAAGTGAGCATATTAAGGCTCAGAAATCATGCTCACTTCAATATC TCTTACTAAAATAATTTTGAGGAAAGATGCTGTTGAAGCTTTCTAGACACGTAATTTGATAAGATTCTTTCAAATGTTAT TCTATTTATAATCTTTTTATGGAATGAAACTAATATGTAAATTTTGAGTCTAAATATTACAATGTGCATTGTAATTGTTA TAATTGATGATTGGTGATACTGGGATTGTATATGTAATGTTGCAATTTTATAGATATTTCAATTCACTATAAACATTCTG CTGTGGTGCAGAGGGATGAAGGAATAAAAATAGTTGTTGAGGCAATATGTGCTGGTGTTTTTAATGACTTGGGAAGTGGA AGTAATGTTGATGTTTGTGTCATAACCAAGGTTAGTGCCTTGATGCCTAATACTAGTACAAGTTATTGTTCGAGGGGATG AATCTGATTTTAATTTGTGCAAATTCTTTACTTTTTCTTCACAGGGACATAAGGAATATCTCAGGAATTACCTCACACCA AATCCTCGCACATATGTCAATCCAAAAGGCTTTACTTTTTCCAAAAAGACTGGTTTGTTGCAAACTATACTAATTTATTA CACTTGAGACCAGAATAAACTAAATTGTTTTGCT
CDS sequence (LotjaGi5g1v0246600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAAGACGGTGGATCTTCCTCCCAAGGGCGGCTTCAGTTTTGATCTCTGCAGAAGAAATGCAATGCTTGAACAGAA GGGCCTTAAGGGCCCATCCTTTCTGAAGACTGGGACGACTATTGTTGGTTTAGTTTTCCAAGATGGTGTCATTCTAGGAG CAGATACTAGGGCAACTTCAGGATCCACAGTTGCTGATAAAAACTGTGAGAAAATTCATTATATGGCACCCAACATATAT TGCTGTGGAGCAGGAACTGCTGCTGACACAGAGGCTGTAACAGACATGGTTAGCTCCCAACTCCAACTACATCGCTACCA TACTGGTCGAGAATCGAGAATTGTTACAGCACTAACCCTTCTTAAGAGACACCTCTTCAATTACCAAGGTCAGGTCTCGG CTGCCTTAGTTCTTGGTGGAGTTGATGCAACTGGCCCTCATTTGCATACTATTTATCCACATGGTTCAACTGACACACTC CCATTTGCTACCATGGGATCAGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAATACAAGGAAAGCTTGACTAGGGA TGAAGGAATAAAAATAGTTGTTGAGGCAATATGTGCTGGTGTTTTTAATGACTTGGGAAGTGGAAGTAATGTTGATGTTT GTGTCATAACCAAGGGACATAAGGAATATCTCAGGAATTACCTCACACCAAATCCTCGCACATATGTCAATCCAAAAGGC TTTACTTTTTCCAAAAAGACTGGTTTGTTGCAAACTATACTAATTTATTACACTTGA
Protein sequence (LotjaGi5g1v0246600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKTVDLPPKGGFSFDLCRRNAMLEQKGLKGPSFLKTGTTIVGLVFQDGVILGADTRATSGSTVADKNCEKIHYMAPNIY CCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRIVTALTLLKRHLFNYQGQVSAALVLGGVDATGPHLHTIYPHGSTDTL PFATMGSGSLAAMSVFESKYKESLTRDEGIKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNYLTPNPRTYVNPKG FTFSKKTGLLQTILIYYT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 11 | 228 | 218 | 2.65E-63 | ||
PANTHER | 23 | 252 | 230 | 4.1E-135 | – | |
PANTHER | 23 | 252 | 230 | 4.1E-135 | – | |
Pfam | 36 | 216 | 181 | 6.4E-48 | ||
ProSiteProfiles | 38 | 216 | 179 | 48.809 | ||
Gene3D | 39 | 252 | 214 | 6.4E-73 | ||
CDD | 39 | 227 | 189 | 4.08569E-131 | – | |
ProSitePatterns | 42 | 89 | 48 | - | ||
PRINTS | 46 | 61 | 16 | 1.8E-9 | ||
PRINTS | 166 | 177 | 12 | 1.8E-9 | ||
PRINTS | 177 | 188 | 12 | 1.8E-9 | ||
PRINTS | 202 | 213 | 12 | 1.8E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi5g1v0246600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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