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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0292900 |
Transcript ID | LotjaGi5g1v0292900.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histidine decarboxylase; TAIR: AT1G43710.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q6ESZ9|SDC1_ORYSJ Serine decarboxylase 1; TrEMBL-Plants: tr|A0A151S6Z1|A0A151S6Z1_CAJCA Histidine decarboxylase; Found in the gene: LotjaGi5g1v0292900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61004802..61007567) extracted from Lotus japonicus Gifu genome v1.2.
GGAGTTTCCGCTTTCGCCGTGTGGGGATATATATGATGCAATACCTTACTACCTTATATATAAATGCAGTAGGAACCACA CACACCACCATAAGCAGAAAATACAGAGTGAAGTTCAGAGTTAGAGAGCAAGCAATTAATACAGAGAGAAAGAAAAGAGT GTGAAGTTCACAGCTAGAGAGAAACCACACACAAACACCAGCATATAAGCAGAACATAGAGTGTGAAGTTCACAGCTAGA GAGAAAGCAATACAGAGAGAAAGAAAACAGAATCAGATATTCAGATTTCAGAGGCAGCCATGAAGGACATGATTCTTGAA TCCCTTTTACAAGCAGGCAAGCACTATTTTCCCCCTTTCCACCTTGTTTCATTTCATCTTTTAGATAAAATGTCTTGTTA CATCCCTAGAAAAATCAGTTTAAGTTTGAAATACAATTTTATTTATTTTTAGTGCTATATGGTATGTAAAATTCACGTGA TTTTAGTCTCATTACAATATCTTTTTAATATTCCAGCATTCAAAGAGTACTTGCATAAGGAGGTCCCAAAAATCAACAAA CCCTCTAGAGAAGAAGAGAAAAATGGGGAAATGCAAGAGAATGAAGGACATATGAACCTCGACATTACTAAGTGCTTCGG GGAGACACGGGCCAATTTGTCTAAAATCATTGCCAACTATGTGGTGATGTTAAACCAAAACAAATCGCGTTGTTTAGGTA TGTAGTATCACATTAATTGGTTTTTCTAATTGATTTGTGCTTGAGACCTTTTCACTAATGATATCCACGAACACAGGCTT CCCTGTTAATCTGGATTTTGACTATGACGCATTGACACCGTTGTTACAATATCACTTAAATAATGCTGGTGATCCATTTC TCGGGAGCGGCTATGGACAAAATTCAGCAGAATTTGAAGTTTGTGTGCTCGATTGGTTTGCCAAACTATGGCAAATGGAG AAGGGTGAATATTGGGGATATGTTACAACAGGTGGGACTGAAGGAAACTTACATGGAATTTTAATGGGGTAAGTTTTTGT TAAATTTCATTTCTAGACCTTTTGAAATTTTACTATTAGTAGAAATGATGCCTCCTACATAGGTTTATGCATATTCCAAA CAAGATCGTTAACTATGGTGTTTATTATTTATAGGAGGGAAAAATTTCAAAACGGGATTCTATATACCTCAGAGAACTCT CATTACTCATTATTCAAAATTGTAATGATGTACAGAATGCAATGTGTTAAGGTCAACACGTTGGTCTCGGGTGAGATTGA TTGTGCTCATTTCAAGACGTTACTTCTATCTCACAAGGACAAACCAGCCATCATCAACCTAAACATAGGTATGTCATCAT TGATAAGTTAATTATGCGCACAACATATAATTATCAAGTTTAAGCATATAATTATCAAGTTACTTTTGCTAAATCCATTT TTCTTGAATGTATAGGAACAACTATGAAAGGAGCAATTGATGACATTGATCTAGTAATACAAACATTAGAGGAATGTGGC TTCCCTCGTGATCGGTTCTACATTCATTGTGATGGAGCTCTATCCGGAATAATGTTGCCGTTTCTTAAACAAGTGAGTGG AAGTTATTAATCTCAATTTTAAGTTTAACAAAAGTATTACTTCGATGATGGTTTACATACAAAGAACAATGAAAAAGTGC TACAAAATTGTTAAGTACAACGAGAAATGTTGCAAATATATCCCAAGTGCAAATCTGAATATGGAGGCATCTAACTTTTT TTAGTATTTACTTTATTTCTTGTTCAATATAACTAATTTTACAATATTGTCCGGATTGTTGTACAGGCTCCGATGATTAA TTTCAAGAAGCCCATTGGAAGTATATCTATTTCTGGTCATAAGTTCTTGGGTTGCCCAATTCCTTGTGGTGTTATATTAA CACGTTCAGAAAACGTCAATGCTCTATCTAGAGATGTTGAATACATTGAATCAAGGGATGTTACAATCACAGGTAGTCGA TGTGGTCTTGCAGCAATCTACCTCTGGTATGCTCTCCAAGAAAGAGGTTTAATCGGACTTAAGAGAGAAACTCAAATATG CATCACAAATGCAAGTCACTTACTTGATAAACTACATGATAATGGTATTGGTGCAATGCGAAATGAGTTTAGTAATACTG TTATATTTGAAAGGCCTCTAGATGATGACTTTGTCCGAAAGTGGAATTTGTCTTGTGAAGGAAATGTTGCACATGTGGTT GTGATGCAGCATGTCACCATTGAGATGCTAGACTCATTTGTTAGTGAACTTGTTAACAAACGGAAAGTTTGGTTTCAAGA TGGACAAAGAAAGTCTCCGTGCATTGCGAACAGCGTTGGTGGAAACAATTGTGCTTGTGGATTGCATAATTCATTTTGAG GGAAGGGGGAATGCTCTTAACAACATAAATGTGAACCATGTAATTACCAATTTGGATGTAGTCATCAATCATTACTCAAT TTTTTTTACTGAGATTCATAATTTTTTTAAGCAAAAGAAAATTATAATTTCATAATCTTTATTGTCGAGTTCCATGTAAA ATCTCATAATTTTGTTTCATGTATCATCTCAAAATTTTGTTTCTCAAGAGTAGTAGAGGTTTTGCTTGTTCATTCAATCC TCGTTGCCTCTTACTACTTCCCCAACAACAATTTCTTTCTTAATGTCTTGCATGCTTCTACAATTCATCTAAGGTATTTT TCTCGGTGTCTTTAAAAAGATGTAAGCTACTAGTAACCAAAAAAAT
CDS sequence (LotjaGi5g1v0292900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGACATGATTCTTGAATCCCTTTTACAAGCAGCATTCAAAGAGTACTTGCATAAGGAGGTCCCAAAAATCAACAA ACCCTCTAGAGAAGAAGAGAAAAATGGGGAAATGCAAGAGAATGAAGGACATATGAACCTCGACATTACTAAGTGCTTCG GGGAGACACGGGCCAATTTGTCTAAAATCATTGCCAACTATGTGGTGATGTTAAACCAAAACAAATCGCGTTGTTTAGGC TTCCCTGTTAATCTGGATTTTGACTATGACGCATTGACACCGTTGTTACAATATCACTTAAATAATGCTGGTGATCCATT TCTCGGGAGCGGCTATGGACAAAATTCAGCAGAATTTGAAGTTTGTGTGCTCGATTGGTTTGCCAAACTATGGCAAATGG AGAAGGGTGAATATTGGGGATATGTTACAACAGGTGGGACTGAAGGAAACTTACATGGAATTTTAATGGGGAGGGAAAAA TTTCAAAACGGGATTCTATATACCTCAGAGAACTCTCATTACTCATTATTCAAAATTGTAATGATGTACAGAATGCAATG TGTTAAGGTCAACACGTTGGTCTCGGGTGAGATTGATTGTGCTCATTTCAAGACGTTACTTCTATCTCACAAGGACAAAC CAGCCATCATCAACCTAAACATAGGAACAACTATGAAAGGAGCAATTGATGACATTGATCTAGTAATACAAACATTAGAG GAATGTGGCTTCCCTCGTGATCGGTTCTACATTCATTGTGATGGAGCTCTATCCGGAATAATGTTGCCGTTTCTTAAACA AGCTCCGATGATTAATTTCAAGAAGCCCATTGGAAGTATATCTATTTCTGGTCATAAGTTCTTGGGTTGCCCAATTCCTT GTGGTGTTATATTAACACGTTCAGAAAACGTCAATGCTCTATCTAGAGATGTTGAATACATTGAATCAAGGGATGTTACA ATCACAGGTAGTCGATGTGGTCTTGCAGCAATCTACCTCTGGTATGCTCTCCAAGAAAGAGGTTTAATCGGACTTAAGAG AGAAACTCAAATATGCATCACAAATGCAAGTCACTTACTTGATAAACTACATGATAATGGTATTGGTGCAATGCGAAATG AGTTTAGTAATACTGTTATATTTGAAAGGCCTCTAGATGATGACTTTGTCCGAAAGTGGAATTTGTCTTGTGAAGGAAAT GTTGCACATGTGGTTGTGATGCAGCATGTCACCATTGAGATGCTAGACTCATTTGTTAGTGAACTTGTTAACAAACGGAA AGTTTGGTTTCAAGATGGACAAAGAAAGTCTCCGTGCATTGCGAACAGCGTTGGTGGAAACAATTGTGCTTGTGGATTGC ATAATTCATTTTGA
Protein sequence (LotjaGi5g1v0292900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDMILESLLQAAFKEYLHKEVPKINKPSREEEKNGEMQENEGHMNLDITKCFGETRANLSKIIANYVVMLNQNKSRCLG FPVNLDFDYDALTPLLQYHLNNAGDPFLGSGYGQNSAEFEVCVLDWFAKLWQMEKGEYWGYVTTGGTEGNLHGILMGREK FQNGILYTSENSHYSLFKIVMMYRMQCVKVNTLVSGEIDCAHFKTLLLSHKDKPAIINLNIGTTMKGAIDDIDLVIQTLE ECGFPRDRFYIHCDGALSGIMLPFLKQAPMINFKKPIGSISISGHKFLGCPIPCGVILTRSENVNALSRDVEYIESRDVT ITGSRCGLAAIYLWYALQERGLIGLKRETQICITNASHLLDKLHDNGIGAMRNEFSNTVIFERPLDDDFVRKWNLSCEGN VAHVVVMQHVTIEMLDSFVSELVNKRKVWFQDGQRKSPCIANSVGGNNCACGLHNSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 20 | 455 | 436 | 2.7E-227 | – | |
PANTHER | 20 | 455 | 436 | 2.7E-227 | – | |
SUPERFAMILY | 75 | 424 | 350 | 1.14E-71 | ||
Gene3D | 99 | 341 | 243 | 3.8E-52 | ||
Pfam | 117 | 367 | 251 | 1.1E-18 | ||
ProSitePatterns | 279 | 300 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi5g1v0292900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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