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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0341600 |
Transcript ID | LotjaGi5g1v0341600.1 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Choline transporter-like protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65880119..65886455) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCCAATGAACTTTATTCAATACAAACATATAAGACAAATTCCGTTGGGGGAGTTTGAGTCCCTGGTAAAAGCCAAGC CAATTTGTTCAACTCTGCTTCCAGAAAGAAGAGAACGATTCTACTCTCTATCTATCTCTATCTGTTAGCCGTTAACTTTC AGTTTACTTTCTGAGCAGTTTCCTTCGAATTCAATTGTCTTCTTCTTCTTCTACTACTATTCATATTCAAAACCCTAATA AACAAATCCCATTGACCTTCTTCTCTCTAAGAAACCTTTCGCCTTAGTCCTCACGTTTTCTCCATTTCCACACAGCCTCT CTATTTCTATATACAATACACAACACAATGCTTCTCCATTGCTTCCAATGATGGATTCTCCCTCTTCCTCTTCCTCTGAG TTTGCTTCCATAGCCACAGCCAATCAGGTATCTCAAATAATCATTTTTCACTCTTTTTCTCTATCTGGGTAACCAATTAT TTGTTACTTCATCATTTTAATTGATTTAGTTCTTCTATCTGAGTACCCAAGTAACCCAACCACTCTCTAATGGCAAAAAG ATTCCATTTTTCTGCTTTAAAGGGAGAATTGACTAAGTTTGTGTATCTGGGTCATTTTGACTGGTCTTTGGTGTCCCCAG TTACCCTCTAATGGCGAAAACTTTTACTGTTTTCACTGGTTTAGTTCTACTTGGTTGTTTTTAATTCTGTTGACTAGTGA GAATTGAGTTCCAAGTTTCTAAATTCTGCTGATTTTGTTGTGGTAGAGTCTAGCGAGAAGTCGGAGAAGTGGCGATGGCA GTGGTAGTGAAGTGGCGGTGGTGGAAGAATCGCGGCCGTGGCATGATGTTTTCTGGTTAGGAATATTTGTAATCCATTTG ATTGGGCTGGGGTTCCTTCTAGGGGTTCTTGGCCTTAACAGATTTGAGCAAGAGAATAGACTTAACATTGATAAGTACAC GTCTCGGTTCTCTGAGAATGAGGCTGGGTTGACGGAGACTTACTGGCCGCTCTATGCCGCTGCTGCTGGGGTTGGGACTG TTCTTGGATGGATTTGGTTGTTGTTGTTGGGTTCCCAGGCTACTCAAATGATGAAGTTTTCTGTCCACATCCTCACCACT TATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTTCTGGGGGGTTGCTTTTGGTATTGGAGCTTCTCT GCAGTTCTTGTATGTCATATCCGTCGTAGACAGGTATAGACCTGAAATCGAATTGTCCTTTACATGTTTTATGTTGGATT GAGTTTAAGTTGTTTTTCTATTACTGAGTGATTGCATAAAGCGAGTCATATTGGTGGTAGATAAGGAATAGGATAGGCCT TGAATGTTAGTATAAGTGTAAGAATATTTGGTCGGTTTCACTTTTTTTGCATTCTGTTTTAATGGAGTCTATAAAGGTTC CCTGTGGCTTCTTTTCTTCTCCAGACTTCCATTTACAATGTTAGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAGTCTTC CTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTTGTGCTTTTATGGATGGTGTTATGGTCATTTGGAGCAGCAGGT GTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTGGCTTCTTGTGGTGAGCTGGCAAGTTTTGCTCTTCATTCTTAC TGTACTTGGTTGGACTGGTTATGGAAGCATGTTTCTTAAGCTTCCTCATTCGATTATGCTGATATTGCAATTCATTCTTG CAGGTTTTCTCTGTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTT TCTTGTTCTTCTCCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCTTCTTTAA CAACATCTTTTGGCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGGTAACAGATCAT TTGCATTTTGCGACTGATTTGAAGTTCATTTCTTTTATTCATGAAGGCTTTTTCTTCTTTCAGATTCGTGGAATTCGGTC AAAGATTGGCAATAATGAGTGTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTTGTTCGTTTTTTTA ACAAGTATGCCTATGTTCAGGTAAACTTCGGCGTCCAAAGTCCATGTTATTAGCCAGTTCTCAATATGATATATATATAT ATATATATATATATATATATATATATTGCATCTTCTACATGACAATCAAACATGAAATATGGTTGATTTTCCTATAGTTT AATTTACACTGGATGTGTTGTACTCTTTGGATCACCAGAAAGAGTTCTATGATAATTTAAATATAGCATCTAGACAACTT TGTTGAAATTTGGTGAATGCATTGGTTCTTGCAAAATTGAGGCATGGTTCTTTGCTCATGTTCTTACAGATTGCTGTTAA TGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTGGAGTTGAAGCTCTTGTGGCCTATG ATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGAACTTGCTCTGGGATTTGGGCATGG GTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGATGGTACTGGTAAGTTTATAATCTCC TTGTTGGGGCTTGGACTACAAGCTTTTGGTTGAACTTTTTACAGTAATGATACTCAGATACCCATTTTTCTCTCTCACAC ACATTTCTTGCTGGGTTTTTGTTGGATGTCTGCGAATTATTTTCCAATTCCTTGTTCTCCAAAATTGATGAGGAACACTG ATAGCATGTTTGGACTAACTTCTCTTTCATTAGAATTAATTCTGACACCCAGAAGCTACTTACAAAAGCTTCTCCCAAGA ATTAATTTTGGCTTTAGAATCAATTATAGAAAGATTTCCGAGCATACATTGAATTGTTATTATTATAATTACTCCGGTCC TTTGCATTTCTCTATTAATCAAAGACATTGATGTTGGCATGCCATGATAATCATTCCCTGACATATGTTGACTATAAAAA ATATTCAAACTGTATTGTTGAATTTTAAGTTTTTTATAGGCACATGGCACAGCTAAATGATGGCCATTCCTTACATATAT CTATTGTTATATCTAAGAATCAGTCAAGCTGTATAATGTAGAACATGTGATTTTTGTGCATGTGACATGAAATACATAAT AAAATTTTCAGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCC TTATTGATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGC TCGAGGAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGAGTCTGAGGAATTGCATTGTTTCGTA TTACCACACTTTGTTTATCCATTATGGTTCATTCATGTCTAGCATATTTTCCCTTTTTTGTGTGGTTTTTAATAGGGTAA TTTTCATATTGTGTGTTAAATTAATAGGAATAGGAGAAAGTCCATGTTGTCTCATGGTCTTTTCGTGTATAAGAATGCAT AGATAAAACACAAAATGTACAGTTTCTATTAATTTTGGCAAAGAAATAAAAGCTTACGTTATTGAGATAGGTTTGAAAAT TCCAAACTGTAGTTCATCCATATATGCATGTTTTTTCAGTGTTTGGTGAGCTACATAACTTGTCACTAATACTCAAGTGT AACTCATTCCCTTAATAAGGACTTAAGCCCCTTTCTTCATGATTTTGCAATTAGCAATAGCCGATTTGATTTCAGCAAGA GGCATTTGGTGCCTGTTTGGAAATTATTATACAATTGATTCTAAAGTTAGAATTAGTTATTGGGAGAAGATTCTGTGCTA AATATCAGTATTGATTTACAAGAAAAGAGAAATTGATCCAAACATGTTGTTAATATATACATATACACAAATACACAGAG AGATTAAGCATTAAGCAATCTAAGTAATAAAACAGAATCAGAGACACATGAAGGACTTCACACGAGCCATCATTTCATGG GCTCTGATCTTTGACACCTGAGATTTGCTTAGAATCTGAAATGCATGTCCAACACCTTTGAAAACCACACACTCAACTCT TTTACCAGCTTTTACTAGAGCATCACACAGCTTCAAGTTCCTATCCTTCAATATGTCCATCTCTGAGACACACACCAAGG TTGGAAAGAGCTTCAATTCCTCCAATTTCAGGGACCCTCTAACCAATGGATTGCACCATGGATGATCACGACCAGCACCA GATGGTAGTGCCAAGCGCCAGTAAGTATCAGAAGCTGCCAAGTTCAAAGCAGAGCCTGGTGATTGTGCCATGCATTTCTC TGAGACTGTTCTGACTTCACCACCAAAAAAAGGTTGTATCAAAATGAGACCCTTTAAATTCAAAGGCCTTAAAGCAGCAC CTGTAGAAATTATAAGAGCAGCATGTATCAAAATCTAGAATTTAGATATATAATATAGCATTACGTATCACACATAACAA AGAATTAAAGATAAAGATAAATAAGAATATAGAGTGTGTCAAACTAGAGGTGTTAATTCGTGCTTTGCCCATGGGGTATT GCTTTTAAAAAAAAATCATTTGAAACATAATTTTCAGAAAATAAATTAAGGCAATTTTTTTTTTCATTTTTACTACATGA AAAAATAAAACACATACAAATGAATTTTTTTTTTGTTATTACTCTTATTTATTTATTTTATATTAATTTTAAATGCAACT GAGTTCTTTATAGTATAAATAATGAACTAAATGGTACTCTCCTTTTCAAATTTTCAAGAACAATTCAAAATCACACATTT TGATTAATCGATTAATACTAATCAAACATAATATAAACAATCTAACAGTACCTTCACATGCAGCTAGCCTTGTGGCAACA TAGTAAGCTATGTTAGCACCAGCACTGTCCCCTGCCAAGTAGACACTAGAAAAGTTGCATTTTGCTGTCCACCATTCACT ACCCTTGTATTGATGTAGCACCTGTTGTTTCACCCACATTAGAGCCTTTAACCCATCATCATAAGGAGCTGGGAGAGGGT TCTCTGGGGCCAATCTATAATTCACTGACATAATCAAACACCCCACTTTAGCAGCTAGCCTAGCAAGGAAATCATGGTAG CAACTCCAAGCTGCAGAGCCAACACAGAAGCCACCCCCATGAAAATAAACCATTAAAGGTAGCTTCTTTTGGCTAATTGG AACATAGAAACGTGCCCAAGTGTTTGTAACATTGTCAATGACCATGTCTCTTGAATTCACATTCAGCTCTGGGGTTAAAG CAGAAGTGACACATGGAACAATTTGAGGTCTTTCCACATGTCCATCATTGTGTACTTTGATAAGGCCTTCAATTTCCTCA ACCACAGAAGGACTATGGTGTTTGTAGTCTTTTCTGGTGTATTGTGGGTTATGGCTTAGACTTGAGGTGAGAGCAGCCAT TATGAGAAGGTGCTGAATCAAGAAACAAAAGAATGGAGTTTGTTTTGTGGTGATTGGGTTTGAAGATTGCTGGTTAGTGG TTTCCTTTATATACAGAGGAAGTGAGTGGAAATAACACTGTAAGGGGGGAAAGTGGTCAATGAATCTTTACGTGCCAAGT GGACAGTTTGTGCAAAGTCTACACGTGTCTTCACGTGAACTCACATGTGGAGGGTCATCTCCATTTTCAGATAAGCCTAC AATTCTGAGAATTCTTAGCTTTGACTATAAAGCTGGGAAGCATGAACAACTAAAAAAGGGGAAAGGGTTGATAGACACTG CCAGAGGTTTAAAAAAGAGCGAATTAGAAAAATAAGGTGAATGAAAGATTGAGTTGATGGTTGAAAACTCACCTACAATT GATTCTTAAAGTGTGATTAATTATGAGAAGAAGTTTATCTGATAACATGTTTAAATGAATTTATTGTTAAGTTTCACCTT AACAAGTGAAATGACAATTGAAGTGCTTATATGTGAGTAGATAGTTCTTTCATTTAGATGTAGTTTTTGAGGTAGAGTTA TATCTTCTAAACTCTAATATGAATTAATTGCATTTTTTAATATGTATATTTTTTCTTCCTGAACAATTAATAAGGAACTT AGAGAGTATACGAGTCCGTCCAAACATGAGGCAATATGACTACTGAAGCGCTTATACGTGAGAAGACAATCCTCATAACT GATTTGAGGGAAAGTAA
CDS sequence (LotjaGi5g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGATTCTCCCTCTTCCTCTTCCTCTGAGTTTGCTTCCATAGCCACAGCCAATCAGAGTCTAGCGAGAAGTCGGAG AAGTGGCGATGGCAGTGGTAGTGAAGTGGCGGTGGTGGAAGAATCGCGGCCGTGGCATGATGTTTTCTGGTTAGGAATAT TTGTAATCCATTTGATTGGGCTGGGGTTCCTTCTAGGGGTTCTTGGCCTTAACAGATTTGAGCAAGAGAATAGACTTAAC ATTGATAAGTACACGTCTCGGTTCTCTGAGAATGAGGCTGGGTTGACGGAGACTTACTGGCCGCTCTATGCCGCTGCTGC TGGGGTTGGGACTGTTCTTGGATGGATTTGGTTGTTGTTGTTGGGTTCCCAGGCTACTCAAATGATGAAGTTTTCTGTCC ACATCCTCACCACTTATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTTCTGGGGGGTTGCTTTTGGT ATTGGAGCTTCTCTGCAGTTCTTGTATGTCATATCCGTCGTAGACAGACTTCCATTTACAATGTTAGTTCTGCAAAAAGC TGTGAAGATGGTTTGGAGTCTTCCTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTTGTGCTTTTATGGATGGTGT TATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTGGCTTCTTGTGGTTTTCTCT GTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTCT CCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCTTCTTTAACAACATCTTTTG GCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGATTCGTGGAATTCGGTCAAAGATT GGCAATAATGAGTGTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTTGTTCGTTTTTTTAACAAGTA TGCCTATGTTCAGATTGCTGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTG GAGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGA ACTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGAT GGTACTGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCCTTAT TGATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGCTCGA GGAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
Protein sequence (LotjaGi5g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDSPSSSSSEFASIATANQSLARSRRSGDGSGSEVAVVEESRPWHDVFWLGIFVIHLIGLGFLLGVLGLNRFEQENRLN IDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMKFSVHILTTYLAVISVLCFWAKQIFWGVAFG IGASLQFLYVISVVDRLPFTMLVLQKAVKMVWSLPEVMRVSYAFMLVVLLWMVLWSFGAAGVVASSMGDGGRWWLLVVFS VSLFWTGAVLCNTVHVIVSGMVFLVLLHGGREAASIPANSLKKSLQSSLTTSFGSICYGSLFTAAIRTLRWEIRGIRSKI GNNECLLCFVDFLFHLVETLVRFFNKYAYVQIAVNGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITG TCSGIWAWVKWSDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDADFFNQISETLHERLQYRSAR GREVLTHSRLQENASI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 47 | 47 | - | – | |
PANTHER | 24 | 490 | 467 | 2.3E-297 | ||
PANTHER | 24 | 490 | 467 | 2.3E-297 | – | |
Phobius | 48 | 70 | 23 | - | – | |
TMHMM | 48 | 70 | 23 | - | – | |
Phobius | 71 | 99 | 29 | - | – | |
TMHMM | 99 | 121 | 23 | - | – | |
Phobius | 100 | 121 | 22 | - | – | |
Phobius | 122 | 132 | 11 | - | – | |
TMHMM | 131 | 150 | 20 | - | – | |
Phobius | 133 | 151 | 19 | - | – | |
Phobius | 152 | 156 | 5 | - | – | |
TMHMM | 155 | 174 | 20 | - | – | |
Phobius | 157 | 179 | 23 | - | – | |
Pfam | 158 | 452 | 295 | 1.4E-53 | ||
Phobius | 180 | 199 | 20 | - | – | |
Phobius | 200 | 227 | 28 | - | – | |
TMHMM | 202 | 224 | 23 | - | – | |
Phobius | 228 | 232 | 5 | - | – | |
Phobius | 233 | 266 | 34 | - | – | |
TMHMM | 236 | 258 | 23 | - | – | |
Phobius | 267 | 385 | 119 | - | – | |
TMHMM | 289 | 311 | 23 | - | – | |
Phobius | 386 | 409 | 24 | - | – | |
TMHMM | 387 | 409 | 23 | - | – | |
Phobius | 410 | 414 | 5 | - | – | |
TMHMM | 415 | 437 | 23 | - | – | |
Phobius | 415 | 437 | 23 | - | – | |
Phobius | 438 | 496 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0341600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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